Ss1.1-Tra1-TCH01C030102.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGCTGCCTCGGCAGGGGGTGTGCGAGGGCTGAGTCAAGGGAGAGTGAGCAAATCCAGG CTTTAATAATCCGAGGAGAAAGCCGCCCGGGTGGATTTGAGGTGCAGTTTGGAGGGAGGG CTCAGGAGCTGCTGGACTTTTTTTTTTTTTCCTCTCCTCTCAGTAGCACGAAGTCCGAAT TAATTGGATTTCATTCACCGGGGAGGAACAAAACTGTCTGGGCAGCTTCATTCAAAGAGA TTCATTGACACCAAGAGCGTGCGGCTGCAGCCGGGTGCAGAGGGAACCGCCGGCTTCACT TCTGTCTCGCTTGCCCCAACCGCTAACCCGGCTCGGGAAAGGAGAGGTGGCATTAAACCC CGCTCCAAGAGCGGCGGCTTTGGCGCGGCGCGCTCGGCCTATGCCTGCCCCGAGGGGAGT CTGGTAGGCACCTCGCCCTCTCCGGCCGCTCGACCCCCATGATAGATACGCTCAGACCCG TGCCCTTCGCGTCGGAGATGGCGATTAGCAAGACGGTAGCGTGGCTCAACGAGCAGCTGG AGCTGGGCAACGAGCGGCTGCTGCTGATGGACTGCCGGCCGCAGGAGCTGTACGAGTCGT CGCACATCGAGTCGGCCATCAACGTGGCCATCCCCGGCATCATGCTGCGGCGCCTGCAGA AGGGCAACCTGCCGGTGCGCGCGCTCTTCACGCGCGGCGAGGACCGGGACCGCTTCACCC GGCGCTGCGGCACCGACACCGTGGTGCTCTACGATGAGAGCAGCAGCGACTGGAACGAGA ATACGGGCGGCGAGTCGGTGCTCGGGCTGCTGCTCAAGAAGCTCAAGGACGAGGGCTGCC GGGCGTTCTACCTAGAAGGTGGTTTCAGTAAGTTCCAAGCCGAGTTCGCCCTGCACTGCG AGACCAATCTAGACGGCTCGTGTAGCAGCAGCTCCCCGCCGTTGCCAGTTCTGGGGCTCG GGGGCCTGCGGATCAGCTCCGACTCCTCCTCGGACATTGAGTCTGACCTTGACCGAGACC CCAATAGTGCAACAGACTCCGATGGCAGCCCGCTGTCCAACAGCCAGCCTTCTTTCCCCG TGGAGATCTTGCCCTTCCTCTACTTGGGCTGTGCCAAGGACTCCACCAACCTGGACGTGT TAGAGGAGTTCGGCATCAAGTACATCTTGAACGTCACCCCCAACTTGCCGAACCTCTTTG AGAACGCAGGAGAGTTCAAATACAAGCAGATCCCCATCTCTGATCACTGGAGCCAAAACC TGTCCCAGTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGCTGCCTCGGCAGGGGGTGTGCGAGGGCTGAGTCAAGGGAGAGTGAGCAAATCCAGG CTTTAATAATCCGAGGAGAAAGCCGCCCGGGTGGATTTGAGGTGCAGTTTGGAGGGAGGG CTCAGGAGCTGCTGGACTTTTTTTTTTTTTCCTCTCCTCTCAGTAGCACGAAGTCCGAAT TAATTGGATTTCATTCACCGGGGAGGAACAAAACTGTCTGGGCAGCTTCATTCAAAGAGA TTCATTGACACCAAGAGCGTGCGGCTGCAGCCGGGTGCAGAGGGAACCGCCGGCTTCACT TCTGTCTCGCTTGCCCCAACCGCTAACCCGGCTCGGGAAAGGAGAGGTGGCATTAAACCC CGCTCCAAGAGCGGCGGCTTTGGCGCGGCGCGCTCGGCCTATGCCTGCCCCGAGGGGAGT CTGGTAGGCACCTCGCCCTCTCCGGCCGCTCGACCCCCATGATAGATACGCTCAGACCCG TGCCCTTCGCGTCGGAGATGGCGATTAGCAAGACGGTAGCGTGGCTCAACGAGCAGCTGG AGCTGGGCAACGAGCGGCTGCTGCTGATGGACTGCCGGCCGCAGGAGCTGTACGAGTCGT CGCACATCGAGTCGGCCATCAACGTGGCCATCCCCGGCATCATGCTGCGGCGCCTGCAGA AGGGCAACCTGCCGGTGCGCGCGCTCTTCACGCGCGGCGAGGACCGGGACCGCTTCACCC GGCGCTGCGGCACCGACACCGTGGTGCTCTACGATGAGAGCAGCAGCGACTGGAACGAGA ATACGGGCGGCGAGTCGGTGCTCGGGCTGCTGCTCAAGAAGCTCAAGGACGAGGGCTGCC GGGCGTTCTACCTAGAAGGTGGTTTCAGTAAGTTCCAAGCCGAGTTCGCCCTGCACTGCG AGACCAATCTAGACGGCTCGTGTAGCAGCAGCTCCCCGCCGTTGCCAGTTCTGGGGCTCG GGGGCCTGCGGATCAGCTCCGACTCCTCCTCGGACATTGAGTCTGACCTTGACCGAGACC CCAATAGTGCAACAGACTCCGATGGCAGCCCGCTGTCCAACAGCCAGCCTTCTTTCCCCG TGGAGATCTTGCCCTTCCTCTACTTGGGCTGTGCCAAGGACTCCACCAACCTGGACGTGT TAGAGGAGTTCGGCATCAAGTACATCTTGAACGTCACCCCCAACTTGCCGAACCTCTTTG AGAACGCAGGAGAGTTCAAATACAAGCAGATCCCCATCTCTGATCACTGGAGCCAAAACC TGTCCCAGTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1090-1209, - strand, RNAz p=0.680709 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1090-1209, - strand, RNAz p=0.680709 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 851-1272, gnl|bosTau2|chr5 (12767729-12768150) | |
| 851-1272, gnl|canFam2|chr15 (33338139-33338611) | |
| 851-1272, gnl|danRer3|chr25 (13201122-13201586) | |
| 851-1272, gnl|dasNov1|scaffold_5940 (72089-71617) | |
| 851-1272, gnl|echTel1|scaffold_317366 (18979-19451) | |
| 851-1272, gnl|fr1|chrUn (38015450-38015920) | |
| 851-1272, gnl|galGal2|chr1 (40083243-40083703) | |
| 851-1272, gnl|hg17|chr12 (88246827-88247299) | |
| 851-1272, gnl|Hg17|chr12 (88247278-88246857) | |
| 851-1272, gnl|loxAfr1|scaffold_14234 (39593-40065) | |
| 851-1272, gnl|mm7|chr10 (98826397-98825924) | |
| 851-1272, gnl|Mm7|chr10 (98825944-98826365) | |
| 851-1272, gnl|monDom2|scaffold_36 (26166283-26166758) | |
| 851-1272, gnl|oryCun1|scaffold_204738 (166779-167252) | |
| 851-1272, gnl|panTro1|chr10 (90372426-90372898) | |
| 851-1272, gnl|rheMac2|chr11 (90499943-90500415) | |
| 851-1272, gnl|rn3|chr7 (36915282-36914809) | |
| 851-1272, gnl|tetNig1|chr13 (10553524-10553990) | |
| 851-1272, gnl|xenTro1|scaffold_237 (674516-674063) | |
| 857-1270, gnl|bosTau2|chr22 (36618346-36617936) | |
| 857-1270, gnl|Hg17|chr3 (52063432-52063022) | |
| 857-1270, gnl|Mm7|chr9 (106100147-106100557) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 851-1272, gnl|bosTau2|chr5 (12767729-12768150) | |
| 851-1272, gnl|canFam2|chr15 (33338139-33338611) | |
| 851-1272, gnl|danRer3|chr25 (13201122-13201586) | |
| 851-1272, gnl|dasNov1|scaffold_5940 (72089-71617) | |
| 851-1272, gnl|echTel1|scaffold_317366 (18979-19451) | |
| 851-1272, gnl|fr1|chrUn (38015450-38015920) | |
| 851-1272, gnl|galGal2|chr1 (40083243-40083703) | |
| 851-1272, gnl|hg17|chr12 (88246827-88247299) | |
| 851-1272, gnl|Hg17|chr12 (88247278-88246857) | |
| 851-1272, gnl|loxAfr1|scaffold_14234 (39593-40065) | |
| 851-1272, gnl|mm7|chr10 (98826397-98825924) | |
| 851-1272, gnl|Mm7|chr10 (98825944-98826365) | |
| 851-1272, gnl|monDom2|scaffold_36 (26166283-26166758) | |
| 851-1272, gnl|oryCun1|scaffold_204738 (166779-167252) | |
| 851-1272, gnl|panTro1|chr10 (90372426-90372898) | |
| 851-1272, gnl|rheMac2|chr11 (90499943-90500415) | |
| 851-1272, gnl|rn3|chr7 (36915282-36914809) | |
| 851-1272, gnl|tetNig1|chr13 (10553524-10553990) | |
| 851-1272, gnl|xenTro1|scaffold_237 (674516-674063) | |
| 857-1270, gnl|bosTau2|chr22 (36618346-36617936) | |
| 857-1270, gnl|Hg17|chr3 (52063432-52063022) | |
| 857-1270, gnl|Mm7|chr9 (106100147-106100557) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| clu (0.598229) | |
| cly (0.120642) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.598229) | |
| cly (0.120642) | |
| cty (0.10408) | |
| eje (0.0988338) |