Ss1.1-Tra1-TCH01C040007.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTGCCAGCGGACGCGGGTGGCGGCGAGTCAGGCTCCTTCAGCCCCGAGCAGAGCTAGC CACAGTGGGGACCGGGGCCCGGGGGTGCGGCGGCTGCGGCTGCAGCGAGAGGACGATGGC AGCGCCCGCCGGGGCCAGGGCACTGATTGCAGCCCCAGACCGCGGGCGCTGGCTGTGGTC GGTGCTGGTGGCGGCGCTCGGACTCCTGACAGCTGGTGGATCGGCCCTGGAGGTTTATAC ACCAAAAGAAATCTTCGTGGCAAATGGGACACAAGGGAAGCTGCCATGCAAGTTCAAGTC TGCTAACATGACCGGCACACTGACTTCAGTCTCCTGGAGCTTCCAGCCAGAGGGGACTGA CAGCACTGTGTCGTTTTTCCACTACTCCCAAGGGCAAGTGTATGCCGGGAATTATCCACC ATTTAAAGATAGAATCAGCTGGGCTGGAGACCTCGAGAAGAAAGATGCATCAATCAACAT AGAAAATATTCAGTTTATACACAATGGCACCTACATCTGTGATGTCAAAAACCCTCCTGA CATTGTTGTCCAGCCAGGACACATTAGGCTCTATGTTGTAGAGAAAGGTATGGATGGGCC TTGAGTAGTTTTGCAGTAATAGCAGAGTCCCTTCTATCTCATGCTTGGTTAGAATTATGC TTCGGCTTTGTCTAGATACTCATGTTGCAACAGAACAAAGGGTGGGGGAAAAATGTAATT GTAATGTATTCATGTAAGGATAACTTGATCCCCTTTCTGCACAGTGGGAAAATAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTGCCAGCGGACGCGGGTGGCGGCGAGTCAGGCTCCTTCAGCCCCGAGCAGAGCTAGC CACAGTGGGGACCGGGGCCCGGGGGTGCGGCGGCTGCGGCTGCAGCGAGAGGACGATGGC AGCGCCCGCCGGGGCCAGGGCACTGATTGCAGCCCCAGACCGCGGGCGCTGGCTGTGGTC GGTGCTGGTGGCGGCGCTCGGACTCCTGACAGCTGGTGGATCGGCCCTGGAGGTTTATAC ACCAAAAGAAATCTTCGTGGCAAATGGGACACAAGGGAAGCTGCCATGCAAGTTCAAGTC TGCTAACATGACCGGCACACTGACTTCAGTCTCCTGGAGCTTCCAGCCAGAGGGGACTGA CAGCACTGTGTCGTTTTTCCACTACTCCCAAGGGCAAGTGTATGCCGGGAATTATCCACC ATTTAAAGATAGAATCAGCTGGGCTGGAGACCTCGAGAAGAAAGATGCATCAATCAACAT AGAAAATATTCAGTTTATACACAATGGCACCTACATCTGTGATGTCAAAAACCCTCCTGA CATTGTTGTCCAGCCAGGACACATTAGGCTCTATGTTGTAGAGAAAGGTATGGATGGGCC TTGAGTAGTTTTGCAGTAATAGCAGAGTCCCTTCTATCTCATGCTTGGTTAGAATTATGC TTCGGCTTTGTCTAGATACTCATGTTGCAACAGAACAAAGGGTGGGGGAAAAATGTAATT GTAATGTATTCATGTAAGGATAACTTGATCCCCTTTCTGCACAGTGGGAAAATAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 492-611, - strand, RNAz p=0.579425 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 492-611, - strand, RNAz p=0.579425 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 4-205, gnl|bosTau2|chr3 (413055-413247) | |
| 4-205, gnl|canFam2|chr7 (33708092-33707649) | |
| 4-205, gnl|canFam2|chr7 (33707744-33708001) | |
| 4-205, gnl|hg17|chr1 (164422829-164423238) | |
| 4-205, gnl|Hg17|chr1 (164422929-164423136) | |
| 4-205, gnl|hg17|chr7 (63641182-63641414) | |
| 4-205, gnl|mm7|chr1 (165605310-165604953) | |
| 4-205, gnl|Mm7|chr1 (165605207-165605016) | |
| 4-205, gnl|oryCun1|scaffold_201750 (180504-180126) | |
| 4-205, gnl|oryCun1|scaffold_201750 (180210-180428) | |
| 4-205, gnl|panTro1|chr1 (146677108-146677511) | |
| 4-205, gnl|panTro1|chr6 (65317284-65317516) | |
| 4-205, gnl|rheMac2|chr1 (197460494-197460891) | |
| 4-205, gnl|rheMac2|chr3 (60709621-60709389) | |
| 4-205, gnl|rn3|chr13 (81372221-81371868) | |
| 373-631, gnl|bosTau2|chr3 (501388-501641) | |
| 373-631, gnl|canFam2|chr7 (33654336-33654097) | |
| 373-631, gnl|canFam2|chr7 (33654102-33654316) | |
| 373-631, gnl|danRer3|chr16 (14122925-14122692) | |
| 373-631, gnl|dasNov1|scaffold_76638 (459-220) | |
| 373-631, gnl|dasNov1|scaffold_76638 (225-439) | |
| 373-631, gnl|echTel1|scaffold_320165 (34618-34383) | |
| 373-631, gnl|echTel1|scaffold_320165 (34385-34597) | |
| 373-631, gnl|fr1|chrUn (323249211-323249450) | |
| 373-631, gnl|galGal2|chr1 (85436312-85436074) | |
| 373-631, gnl|galGal2|chr1 (85436079-85436292) | |
| 373-631, gnl|hg17|chr1 (164473151-164473389) | |
| 373-631, gnl|Hg17|chr1 (164473169-164473422) | |
| 373-631, gnl|hg17|chr7 (63640801-63641015) | |
| 373-631, gnl|loxAfr1|scaffold_200697 (394-630) | |
| 373-631, gnl|loxAfr1|scaffold_200697 (628-413) | |
| 373-631, gnl|mm7|chr1 (165576555-165576317) | |
| 373-631, gnl|mm7|chr1 (165576322-165576536) | |
| 373-631, gnl|Mm7|chr1 (165576535-165576311) | |
| 373-631, gnl|oryCun1|scaffold_201750 (138122-137883) | |
| 373-631, gnl|oryCun1|scaffold_201750 (137888-138102) | |
| 373-631, gnl|panTro1|chr1 (146726112-146726350) | |
| 373-631, gnl|panTro1|chr6 (65316904-65317118) | |
| 373-631, gnl|rheMac2|chr1 (197507278-197507516) | |
| 373-631, gnl|rheMac2|chr3 (60710002-60709788) | |
| 373-631, gnl|rn3|chr13 (81347269-81347031) | |
| 373-631, gnl|rn3|chr13 (81347036-81347250) | |
| 373-631, gnl|xenTro1|scaffold_159 (153515-153751) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-205, gnl|bosTau2|chr3 (413055-413247) | |
| 4-205, gnl|canFam2|chr7 (33708092-33707649) | |
| 4-205, gnl|canFam2|chr7 (33707744-33708001) | |
| 4-205, gnl|hg17|chr1 (164422829-164423238) | |
| 4-205, gnl|Hg17|chr1 (164422929-164423136) | |
| 4-205, gnl|hg17|chr7 (63641182-63641414) | |
| 4-205, gnl|mm7|chr1 (165605310-165604953) | |
| 4-205, gnl|Mm7|chr1 (165605207-165605016) | |
| 4-205, gnl|oryCun1|scaffold_201750 (180504-180126) | |
| 4-205, gnl|oryCun1|scaffold_201750 (180210-180428) | |
| 4-205, gnl|panTro1|chr1 (146677108-146677511) | |
| 4-205, gnl|panTro1|chr6 (65317284-65317516) | |
| 4-205, gnl|rheMac2|chr1 (197460494-197460891) | |
| 4-205, gnl|rheMac2|chr3 (60709621-60709389) | |
| 4-205, gnl|rn3|chr13 (81372221-81371868) | |
| 373-631, gnl|bosTau2|chr3 (501388-501641) | |
| 373-631, gnl|canFam2|chr7 (33654336-33654097) | |
| 373-631, gnl|canFam2|chr7 (33654102-33654316) | |
| 373-631, gnl|danRer3|chr16 (14122925-14122692) | |
| 373-631, gnl|dasNov1|scaffold_76638 (459-220) | |
| 373-631, gnl|dasNov1|scaffold_76638 (225-439) | |
| 373-631, gnl|echTel1|scaffold_320165 (34618-34383) | |
| 373-631, gnl|echTel1|scaffold_320165 (34385-34597) | |
| 373-631, gnl|fr1|chrUn (323249211-323249450) | |
| 373-631, gnl|galGal2|chr1 (85436312-85436074) | |
| 373-631, gnl|galGal2|chr1 (85436079-85436292) | |
| 373-631, gnl|hg17|chr1 (164473151-164473389) | |
| 373-631, gnl|Hg17|chr1 (164473169-164473422) | |
| 373-631, gnl|hg17|chr7 (63640801-63641015) | |
| 373-631, gnl|loxAfr1|scaffold_200697 (394-630) | |
| 373-631, gnl|loxAfr1|scaffold_200697 (628-413) | |
| 373-631, gnl|mm7|chr1 (165576555-165576317) | |
| 373-631, gnl|mm7|chr1 (165576322-165576536) | |
| 373-631, gnl|Mm7|chr1 (165576535-165576311) | |
| 373-631, gnl|oryCun1|scaffold_201750 (138122-137883) | |
| 373-631, gnl|oryCun1|scaffold_201750 (137888-138102) | |
| 373-631, gnl|panTro1|chr1 (146726112-146726350) | |
| 373-631, gnl|panTro1|chr6 (65316904-65317118) | |
| 373-631, gnl|rheMac2|chr1 (197507278-197507516) | |
| 373-631, gnl|rheMac2|chr3 (60710002-60709788) | |
| 373-631, gnl|rn3|chr13 (81347269-81347031) | |
| 373-631, gnl|rn3|chr13 (81347036-81347250) | |
| 373-631, gnl|xenTro1|scaffold_159 (153515-153751) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| sme (0.305437) | |
| nms (0.213858) | |
| fli (0.202881) | |
| nep (0.183925) | |
| nje (0.16592) | |
| cst (0.140036) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| nms (0.213858) | |
| fli (0.202881) | |
| nep (0.183925) | |
| nje (0.16592) | |
| cst (0.140036) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| jej (0.0989218) | |
| ldo (0.0970026) |