Non-Coding RNA Search

Ss1.1-Tra1-TCH01C040010.5

Sequence:


               
               GGATCCCCTCATGAGCCGGCTGTTCTATGGGGTGAAGGCGGGGCCAGGGGTGGGGGCCCC
CCGCCGCAGCGGACACACCTTCACAGTCAACCCCCGACGGTCCGCGCCCCCTGCAGCTGC
TGCCACTCCAGCCACCCCAGCCACAGCTGACGCTGCAGTCCCCGGAGCTGGAAAGAAGCG
GTACCCGACTGCCGAGGAGATCTTGGTTCTGGGGGGCTACCTCCGCCTCAGCCGCAGCTG
CCTTGCCAAGGGGTCCCCTGAAAGGCACCACAAACAGCTCAAGATCTCCTTCAGCGAGAC
AGCCCTGGAGACCACGTATCAGTACCCCTCCGAGAGTTCGGTGCTGGAGGAGCTGGGACC
TGAGCCTGAGGCCCCTAGTGCCCCCAGCCCCCCAGCGGCCCAACCCGACGACGAAGAGGA
TGAAGAGGAGCTGCTACTGCTGCAGCGGGAGCTCCAGGGCGGGCTGCGTACCAAGGCCCT
GATAGTGGACGAGTCTTGCCGGAGGTGACCCTCTTCCAACGCAGGCCTGTACCTCCCTCC
TTCCCAGAACTGAAGATCCTGGAGCCCAGAAGATTCAGAGCAGACAGACCCTGAAAATGA
GCCTGGCAGGGAAGGGCAACTAACATCTTCCAACTCGCTTTCCTCATCCTGTTTCTGGGG
GCAGAGGCAACCGCTCAGTTTCCACCCTGGGCAGATGTGCTGGTGCATCCGAGGTGATCC
AAAGTCCCCCTTCATGTCCTGGGGAGGAGTAGAGAGCTCACTGGGGTGGGGAGGCAGCAC
CCTCTCCATCTCCCGGGCAGGGTACAGTCTCTTCACAGACTCCCCCCACCCTCTTGGGGT
CTCCGGATTTAAGCACCCACCTCCCTGGGAGGCCGGGCCTCCACTCCATTCCCAGAGAGG
GCCTGGCCTCCTTACTGTTCCTTAGGTTATTGCCCCCTTTGTTTACTGCCCCTGCCTCCT
CTCTGGACCACAGCCTGGTTTACAAACCCCATCAGCCCCCAGCGCCCACCTGCCAAAGTC
CCAGGTTTACAAGCCACGCCTCCTCGGAGGGCCCTGTGGAATCTTCTCCTCTGCCCCCTG
CTGTCACCTCCGTGGGGTATGGCTTCCTCCACTTTTGCTCAGTATTACTGTGTCTCAGTT
TTCCCCAAGAGGGAATGCTGGGAACCTTAACTCTGTATCCTCCCCACCCCCCACCCCAGT
TATTTAATTCTGTTCCTCCTAGTGGTTCACGAGTGAATTGAATTGCGAGGGTGTGGGGTG
GATCATGAGGCACCTCAACTCTCTTCCCGTTTCTCCTTCCTTCTCCATTGCCTATTTTTG
TTTTGTTTTGTTTTTGTTTGTTTTTTAACTTTCCATAATAAAATGGAGCTCTCTCCGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATCCCCTCATGAGCCGGCTGTTCTATGGGGTGAAGGCGGGGCCAGGGGTGGGGGCCCC
CCGCCGCAGCGGACACACCTTCACAGTCAACCCCCGACGGTCCGCGCCCCCTGCAGCTGC
TGCCACTCCAGCCACCCCAGCCACAGCTGACGCTGCAGTCCCCGGAGCTGGAAAGAAGCG
GTACCCGACTGCCGAGGAGATCTTGGTTCTGGGGGGCTACCTCCGCCTCAGCCGCAGCTG
CCTTGCCAAGGGGTCCCCTGAAAGGCACCACAAACAGCTCAAGATCTCCTTCAGCGAGAC
AGCCCTGGAGACCACGTATCAGTACCCCTCCGAGAGTTCGGTGCTGGAGGAGCTGGGACC
TGAGCCTGAGGCCCCTAGTGCCCCCAGCCCCCCAGCGGCCCAACCCGACGACGAAGAGGA
TGAAGAGGAGCTGCTACTGCTGCAGCGGGAGCTCCAGGGCGGGCTGCGTACCAAGGCCCT
GATAGTGGACGAGTCTTGCCGGAGGTGACCCTCTTCCAACGCAGGCCTGTACCTCCCTCC
TTCCCAGAACTGAAGATCCTGGAGCCCAGAAGATTCAGAGCAGACAGACCCTGAAAATGA
GCCTGGCAGGGAAGGGCAACTAACATCTTCCAACTCGCTTTCCTCATCCTGTTTCTGGGG
GCAGAGGCAACCGCTCAGTTTCCACCCTGGGCAGATGTGCTGGTGCATCCGAGGTGATCC
AAAGTCCCCCTTCATGTCCTGGGGAGGAGTAGAGAGCTCACTGGGGTGGGGAGGCAGCAC
CCTCTCCATCTCCCGGGCAGGGTACAGTCTCTTCACAGACTCCCCCCACCCTCTTGGGGT
CTCCGGATTTAAGCACCCACCTCCCTGGGAGGCCGGGCCTCCACTCCATTCCCAGAGAGG
GCCTGGCCTCCTTACTGTTCCTTAGGTTATTGCCCCCTTTGTTTACTGCCCCTGCCTCCT
CTCTGGACCACAGCCTGGTTTACAAACCCCATCAGCCCCCAGCGCCCACCTGCCAAAGTC
CCAGGTTTACAAGCCACGCCTCCTCGGAGGGCCCTGTGGAATCTTCTCCTCTGCCCCCTG
CTGTCACCTCCGTGGGGTATGGCTTCCTCCACTTTTGCTCAGTATTACTGTGTCTCAGTT
TTCCCCAAGAGGGAATGCTGGGAACCTTAACTCTGTATCCTCCCCACCCCCCACCCCAGT
TATTTAATTCTGTTCCTCCTAGTGGTTCACGAGTGAATTGAATTGCGAGGGTGTGGGGTG
GATCATGAGGCACCTCAACTCTCTTCCCGTTTCTCCTTCCTTCTCCATTGCCTATTTTTG
TTTTGTTTTGTTTTTGTTTGTTTTTTAACTTTCCATAATAAAATGGAGCTCTCTCCGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13544095|gb|AAH06176.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13544095|gb|AAH06176.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               765-957, - strand, RNAz p=0.994105
               

               
               835-950, - strand, RNAz p=0.643099
               

               
               1175-1371, - strand, RNAz p=0.959281
               

               
               1178-1294, + strand, RNAz p=0.819641

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               765-957, - strand, RNAz p=0.994105
               

               
               835-950, - strand, RNAz p=0.643099
               

               
               1175-1371, - strand, RNAz p=0.959281
               

               
               1178-1294, + strand, RNAz p=0.819641

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC066644, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC066644, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-277, gnl|bosTau2|chr23 (20828412-20828688)
               

               
               1-277, gnl|Hg17|chr6 (30760440-30760164)
               

               
               1-277, gnl|Mm7|chr17 (33971617-33971893)
               


               
               488-1376, gnl|bosTau2|chr23 (20834716-20835583)
               

               
               488-1376, gnl|canFam2|chr12 (3482624-3483166)
               

               
               488-1376, gnl|echTel1|scaffold_88779 (963-1468)
               

               
               488-1376, gnl|hg17|chr6 (30752124-30752685)
               

               
               488-1376, gnl|Hg17|chr6 (30753045-30752147)
               

               
               488-1376, gnl|loxAfr1|scaffold_14465 (8292-7772)
               

               
               488-1376, gnl|mm7|chr17 (33979718-33979228)
               

               
               488-1376, gnl|Mm7|chr17 (33978901-33979694)
               

               
               488-1376, gnl|monDom2|scaffold_42 (18641334-18640744)
               

               
               488-1376, gnl|oryCun1|scaffold_196183 (24305-23739)
               

               
               488-1376, gnl|panTro1|chr5 (31213513-31214075)
               

               
               488-1376, gnl|rheMac2|chr4 (30257725-30258282)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-277, gnl|bosTau2|chr23 (20828412-20828688)
               

               
               1-277, gnl|Hg17|chr6 (30760440-30760164)
               

               
               1-277, gnl|Mm7|chr17 (33971617-33971893)
               


               
               488-1376, gnl|bosTau2|chr23 (20834716-20835583)
               

               
               488-1376, gnl|canFam2|chr12 (3482624-3483166)
               

               
               488-1376, gnl|echTel1|scaffold_88779 (963-1468)
               

               
               488-1376, gnl|hg17|chr6 (30752124-30752685)
               

               
               488-1376, gnl|Hg17|chr6 (30753045-30752147)
               

               
               488-1376, gnl|loxAfr1|scaffold_14465 (8292-7772)
               

               
               488-1376, gnl|mm7|chr17 (33979718-33979228)
               

               
               488-1376, gnl|Mm7|chr17 (33978901-33979694)
               

               
               488-1376, gnl|monDom2|scaffold_42 (18641334-18640744)
               

               
               488-1376, gnl|oryCun1|scaffold_196183 (24305-23739)
               

               
               488-1376, gnl|panTro1|chr5 (31213513-31214075)
               

               
               488-1376, gnl|rheMac2|chr4 (30257725-30258282)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               cly (0.482567)
               

               
               cag (0.453583)
               

               
               ill (0.351185)
               

               
               med (0.348756)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               ese (0.253004)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.482567)
               

               
               cag (0.453583)
               

               
               ill (0.351185)
               

               
               med (0.348756)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               ese (0.253004)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	765-957, - strand, RNAz p=0.994105
	835-950, - strand, RNAz p=0.643099
	1175-1371, - strand, RNAz p=0.959281
	1178-1294, + strand, RNAz p=0.819641

	1-277, gnl\|bosTau2\|chr23 (20828412-20828688)
	1-277, gnl\|Hg17\|chr6 (30760440-30760164)
	1-277, gnl\|Mm7\|chr17 (33971617-33971893)

	488-1376, gnl\|bosTau2\|chr23 (20834716-20835583)
	488-1376, gnl\|canFam2\|chr12 (3482624-3483166)
	488-1376, gnl\|echTel1\|scaffold_88779 (963-1468)
	488-1376, gnl\|hg17\|chr6 (30752124-30752685)
	488-1376, gnl\|Hg17\|chr6 (30753045-30752147)
	488-1376, gnl\|loxAfr1\|scaffold_14465 (8292-7772)
	488-1376, gnl\|mm7\|chr17 (33979718-33979228)
	488-1376, gnl\|Mm7\|chr17 (33978901-33979694)
	488-1376, gnl\|monDom2\|scaffold_42 (18641334-18640744)
	488-1376, gnl\|oryCun1\|scaffold_196183 (24305-23739)
	488-1376, gnl\|panTro1\|chr5 (31213513-31214075)
	488-1376, gnl\|rheMac2\|chr4 (30257725-30258282)

	cly (0.482567)
	cag (0.453583)
	ill (0.351185)
	med (0.348756)
	lnt (0.284616)
	cga (0.279096)
	ese (0.253004)
	ecc (0.23007)
	fcc (0.197785)
	eje (0.197668)
	nje (0.16592)
	cje (0.165235)
	csp (0.161186)
	hyp (0.142837)
	pla (0.133672)
	ebs (0.118301)
	jej (0.0989218)