Ss1.1-Tra1-TCH01C040064.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTGTGGACATGGCTGCTGCAGTCGGACAGTACAGAGACGTGTCGGGCTGTTCTGTAAC CTCGGTCCGTGCCCAGGAAGCGGAGCAGCTGCCCCACTAGTATTCTTACCGACCAGGCGA CGCAGCGGGCCCTCGGAGAGAGCGAGCGTCGGGGCCATGGCTTATCACTCGGGCTACGGA GCCCACGGCTCCAAGCACAGGGCCCGGGCAGCTCCGGATCCCCCTTCCCTCTTCGATGAC ACAAGCGGTGGTTACTCCAGCCAGCCAGGGGGATACCCAGCCCCAGGAGCCGACGTGGCC TTCAATGTCAACCACTTGCTTGGGGACCCAATGGCCAACGTGGCTATGGCCTATGGCAGC TCCATCGCCTCCCATGGGAAGGACATGGTGCACAAGGAGCTACACCGTTTCGTGTCTGTG AACAAACTCAAGTATTTTTTCGCTGTGGACACAGCCTATGTGGCTAAGAAGCTAGGGCTG CTGGTCTTCCCTTACACACACCAGAACTGGGAAGTGCAGTACAGTCGCGATGTGCCTCTG CCCCCTCGGCAAGACCTCAACGCCCCCGACCTCTATATTCCCACGATGGCCTTCATCACC TATGTGCTGCTGGCTGGGATGGCGCTGGGCATTCAGAAAAGGTTCTCCCCAGAGGTGCTG GGCCTGTGTGCAAGTACCGCGCTGGTGTGGGTGGTGATGGAGGTGCTAGCCTTGCTCCTG GGCATCTACCTGGCCACCGTGCGCAGTGACCTGAGCACCTTCCACCTGCTGGCCTACAGC GGCTACAAATATGTGGGGATGATCCTCAGTGTTCTCACGGGCCTGCTTTTTGGCAGCGAT GGCTACTACGTAGCGCTGGCCTGGACTTCGTCTGCGCTCATGTACTTCATCGTGCGCTCT TTGCGAACTGCAGCCCTGGGCTCCGACAGCATGGGGGGCCCGGCCCCCCGGCAGCGCCTC CAGCTCTACCTGACCCTGGGAGCTGCAGCCTTCCAGCCCCTCATCATATACTGGCTGACT TTCCACTTGGTTCGGTGACCCCTGGTCCCTGCTGGCACTGATTTTTCCATACAGCGAAGA TTTGGTTTCCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTGTGGACATGGCTGCTGCAGTCGGACAGTACAGAGACGTGTCGGGCTGTTCTGTAAC CTCGGTCCGTGCCCAGGAAGCGGAGCAGCTGCCCCACTAGTATTCTTACCGACCAGGCGA CGCAGCGGGCCCTCGGAGAGAGCGAGCGTCGGGGCCATGGCTTATCACTCGGGCTACGGA GCCCACGGCTCCAAGCACAGGGCCCGGGCAGCTCCGGATCCCCCTTCCCTCTTCGATGAC ACAAGCGGTGGTTACTCCAGCCAGCCAGGGGGATACCCAGCCCCAGGAGCCGACGTGGCC TTCAATGTCAACCACTTGCTTGGGGACCCAATGGCCAACGTGGCTATGGCCTATGGCAGC TCCATCGCCTCCCATGGGAAGGACATGGTGCACAAGGAGCTACACCGTTTCGTGTCTGTG AACAAACTCAAGTATTTTTTCGCTGTGGACACAGCCTATGTGGCTAAGAAGCTAGGGCTG CTGGTCTTCCCTTACACACACCAGAACTGGGAAGTGCAGTACAGTCGCGATGTGCCTCTG CCCCCTCGGCAAGACCTCAACGCCCCCGACCTCTATATTCCCACGATGGCCTTCATCACC TATGTGCTGCTGGCTGGGATGGCGCTGGGCATTCAGAAAAGGTTCTCCCCAGAGGTGCTG GGCCTGTGTGCAAGTACCGCGCTGGTGTGGGTGGTGATGGAGGTGCTAGCCTTGCTCCTG GGCATCTACCTGGCCACCGTGCGCAGTGACCTGAGCACCTTCCACCTGCTGGCCTACAGC GGCTACAAATATGTGGGGATGATCCTCAGTGTTCTCACGGGCCTGCTTTTTGGCAGCGAT GGCTACTACGTAGCGCTGGCCTGGACTTCGTCTGCGCTCATGTACTTCATCGTGCGCTCT TTGCGAACTGCAGCCCTGGGCTCCGACAGCATGGGGGGCCCGGCCCCCCGGCAGCGCCTC CAGCTCTACCTGACCCTGGGAGCTGCAGCCTTCCAGCCCCTCATCATATACTGGCTGACT TTCCACTTGGTTCGGTGACCCCTGGTCCCTGCTGGCACTGATTTTTCCATACAGCGAAGA TTTGGTTTCCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 905-1063, - strand, RNAz p=0.917583 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 905-1063, - strand, RNAz p=0.917583 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 182-399, gnl|bosTau2|chr29 (37227128-37227346) | |
| 182-399, gnl|canFam2|chr18 (54042256-54042027) | |
| 182-399, gnl|danRer3|chrNA (229979644-229979398) | |
| 182-399, gnl|dasNov1|scaffold_93587 (7930-8159) | |
| 182-399, gnl|echTel1|scaffold_230773 (2238-2008) | |
| 182-399, gnl|fr1|chrUn (186364091-186364353) | |
| 182-399, gnl|hg17|chr11 (65812123-65812352) | |
| 182-399, gnl|Hg17|chr11 (65812346-65812128) | |
| 182-399, gnl|loxAfr1|scaffold_152424 (3908-4115) | |
| 182-399, gnl|mm7|chr19 (4984443-4984214) | |
| 182-399, gnl|Mm7|chr19 (4984218-4984436) | |
| 182-399, gnl|monDom2|scaffold_107 (2659477-2659279) | |
| 182-399, gnl|oryCun1|scaffold_145704 (308-79) | |
| 182-399, gnl|panTro1|chr9 (67064710-67064939) | |
| 182-399, gnl|rheMac2|chr14 (8155070-8154841) | |
| 182-399, gnl|rn3|chr1 (207865770-207865541) | |
| 182-399, gnl|tetNig1|chr1 (8222197-8222447) | |
| 640-811, gnl|bosTau2|chr29 (37229320-37229490) | |
| 640-811, gnl|canFam2|chr18 (54044565-54044386) | |
| 640-811, gnl|danRer3|chrNA (229982304-229982130) | |
| 640-811, gnl|dasNov1|scaffold_93587 (6005-6176) | |
| 640-811, gnl|echTel1|scaffold_159662 (3806-3975) | |
| 640-811, gnl|fr1|chrUn (186362526-186362717) | |
| 640-811, gnl|hg17|chr11 (65809415-65809593) | |
| 640-811, gnl|Hg17|chr11 (65809585-65809415) | |
| 640-811, gnl|mm7|chr19 (4986517-4986338) | |
| 640-811, gnl|Mm7|chr19 (4986345-4986515) | |
| 640-811, gnl|monDom2|scaffold_139 (234084-234251) | |
| 640-811, gnl|oryCun1|scaffold_145704 (1746-1573) | |
| 640-811, gnl|panTro1|chr9 (67062002-67062180) | |
| 640-811, gnl|rheMac2|chr14 (8158039-8157861) | |
| 640-811, gnl|rn3|chr1 (207868100-207867921) | |
| 640-811, gnl|tetNig1|chr1 (8220632-8220800) | |
| 866-1092, gnl|bosTau2|chr29 (37230085-37230308) | |
| 866-1092, gnl|Hg17|chr11 (65808852-65808629) | |
| 866-1092, gnl|Mm7|chr19 (4987087-4987309) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 182-399, gnl|bosTau2|chr29 (37227128-37227346) | |
| 182-399, gnl|canFam2|chr18 (54042256-54042027) | |
| 182-399, gnl|danRer3|chrNA (229979644-229979398) | |
| 182-399, gnl|dasNov1|scaffold_93587 (7930-8159) | |
| 182-399, gnl|echTel1|scaffold_230773 (2238-2008) | |
| 182-399, gnl|fr1|chrUn (186364091-186364353) | |
| 182-399, gnl|hg17|chr11 (65812123-65812352) | |
| 182-399, gnl|Hg17|chr11 (65812346-65812128) | |
| 182-399, gnl|loxAfr1|scaffold_152424 (3908-4115) | |
| 182-399, gnl|mm7|chr19 (4984443-4984214) | |
| 182-399, gnl|Mm7|chr19 (4984218-4984436) | |
| 182-399, gnl|monDom2|scaffold_107 (2659477-2659279) | |
| 182-399, gnl|oryCun1|scaffold_145704 (308-79) | |
| 182-399, gnl|panTro1|chr9 (67064710-67064939) | |
| 182-399, gnl|rheMac2|chr14 (8155070-8154841) | |
| 182-399, gnl|rn3|chr1 (207865770-207865541) | |
| 182-399, gnl|tetNig1|chr1 (8222197-8222447) | |
| 640-811, gnl|bosTau2|chr29 (37229320-37229490) | |
| 640-811, gnl|canFam2|chr18 (54044565-54044386) | |
| 640-811, gnl|danRer3|chrNA (229982304-229982130) | |
| 640-811, gnl|dasNov1|scaffold_93587 (6005-6176) | |
| 640-811, gnl|echTel1|scaffold_159662 (3806-3975) | |
| 640-811, gnl|fr1|chrUn (186362526-186362717) | |
| 640-811, gnl|hg17|chr11 (65809415-65809593) | |
| 640-811, gnl|Hg17|chr11 (65809585-65809415) | |
| 640-811, gnl|mm7|chr19 (4986517-4986338) | |
| 640-811, gnl|Mm7|chr19 (4986345-4986515) | |
| 640-811, gnl|monDom2|scaffold_139 (234084-234251) | |
| 640-811, gnl|oryCun1|scaffold_145704 (1746-1573) | |
| 640-811, gnl|panTro1|chr9 (67062002-67062180) | |
| 640-811, gnl|rheMac2|chr14 (8158039-8157861) | |
| 640-811, gnl|rn3|chr1 (207868100-207867921) | |
| 640-811, gnl|tetNig1|chr1 (8220632-8220800) | |
| 866-1092, gnl|bosTau2|chr29 (37230085-37230308) | |
| 866-1092, gnl|Hg17|chr11 (65808852-65808629) | |
| 866-1092, gnl|Mm7|chr19 (4987087-4987309) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| eep (0.367692) | |
| clu (0.358938) | |
| nco (0.323468) | |
| fce (0.271592) | |
| ese (0.253004) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nje (0.16592) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.367692) | |
| clu (0.358938) | |
| nco (0.323468) | |
| fce (0.271592) | |
| ese (0.253004) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nje (0.16592) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) |