Non-Coding RNA Search

Ss1.1-Tra1-TCH01C040076.5

Sequence:


               
               TTCAAGTCTGACATCTGGTCTCTGGGCTGTTTGCTGTATGAGATGGCAGCTCTTCAGAGC
CCCTTCTACGGAGATAAGATGAATCTCTTCTCCCTCTGCCAGAAGATCGAGCAGTGCGAC
TACCCGCCTCTCCCTGGAGAGCATTACTCTGAGAAGTTACGAGAACTGGTCAGTATGTGC
ATCTACCCCGACCCCAACCAGAGACCCGACATCGGATACGTGCACCAGGTTGCCAGACAG
ATGCACGTGTGGACTTCGAGCACCTGAGCGCGGACACGGCGTCCTCCTCAGAAGCCACGC
CACTCTGCCTTACCTGAGTCTTCTCGCCACAGTGGCCACCGGGTAGCCGAGACCAACCGA
GACAAGAGGGTTCCGCAGGTTCCCCAGAGGGGGCGTGGGCTTCACCGCAGATGCTGAATG
CAGGGCCGCTGGGGGGAGGGGCACTGGTCACGTGTTACTGGTGGTCACATTCGAAAGTCC
TTTCTTTCAACTGTCATGGACACGCTCAGCTGGGGTTTGTCGACAAGGGTGGTGGGTGGT
TCAGCGAGCCTCTGCCGCACCCCTTCTATCTGGATTGTAATGTGAATCTTTAGGATAATT
CCCTCAGTGACTTGTCAAGGTCTGTACTAAGGAGAATCGCAGGAGGCTGTGTGATTTGTA
GTGAGCCTTTGAAAATGGTTAGTAGCAAGTTCGGTTTAGCTCTTAGAATCTTTCCAAACA
ATCAAGCTGTGTGCTTAATTTACTCTGTTGTAAAGGGAGAAAGCGGAAATAATTTTTTAA
AAGTAGAGTGGAGATTTTCCTAATGTTTTTATCTACATGTGTAACTTGAGGAATGACAAT
GAGGAGAACCCAGCATCTGGCATAGAGGCAAATCATGTTTGAAAGCCACGAGTGTTTTCT
GCGCAGTCCGGCTCAGCCATCCTCTCCCGAACACCTGCTATGTACCAGGCACTAGTCACC
TGCTTGAAGGCTGGCAGTTCATTTCATGATCAGTGTTAAGTGTTTTCCTCCGTGAGAAGA
AAGCATAGGATACAAAAAAATATAAAGACTCTGCCCTCAGGCTGTTCTCTGTACAAGCTC
TGGTTCTGCAGCTTCCTAGCATGGCCTTGGGCGAGTTTCTTAGCCTCTCTGAGCCTGTTT
CCTCATCTGTAAAATGGGACTAGTGACATCTACCTTCAGGGTTGCTGGCAGAATTTGAAA
TAAAATGTGTAAGTTATCTAGCCCATTGTAGATGATCCAAAAGTGGTAGCCACTCACCCC
TTCACAAAACTAAAGTGCATGGACCATGGAGTCAAGAGTTAATGTACAACTGTATTATTT
GCAGGAAACCGGAAATGTGTTCACTTATTTCTTGTTCCCAAATAGGATTAACTGTGAAGA
CTAATTTATAAATGTGAACTTACTTAAGGAAAACGCAAGCTCTGAAGGTAATAGCTTGAA
TTTTGTTTTTATACTCAAGTTAATCCTCAGATGTCCCAAGCTGTCGTCCACTGACGTGGT
GACAGTTCAGCCCTGCAGACAGAGCACAAGCCCTTCCGCCCCACTGGTGTCCTGGTCAGG
CACTCTGACCCGTCTCCCTGGGGAGAAAGGACTGGGGCTGGGCCACACGCTGTTTCCATG
TGTGAACTCCGTTCTACTGTAACACTGTCAGGTTTGAGAGATTTTCTTCAGATGCAACCT
TTGCTTTGTACTTGTTCTCCATGGTTGAAATAAAATGGGGTGAGAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAAGTCTGACATCTGGTCTCTGGGCTGTTTGCTGTATGAGATGGCAGCTCTTCAGAGC
CCCTTCTACGGAGATAAGATGAATCTCTTCTCCCTCTGCCAGAAGATCGAGCAGTGCGAC
TACCCGCCTCTCCCTGGAGAGCATTACTCTGAGAAGTTACGAGAACTGGTCAGTATGTGC
ATCTACCCCGACCCCAACCAGAGACCCGACATCGGATACGTGCACCAGGTTGCCAGACAG
ATGCACGTGTGGACTTCGAGCACCTGAGCGCGGACACGGCGTCCTCCTCAGAAGCCACGC
CACTCTGCCTTACCTGAGTCTTCTCGCCACAGTGGCCACCGGGTAGCCGAGACCAACCGA
GACAAGAGGGTTCCGCAGGTTCCCCAGAGGGGGCGTGGGCTTCACCGCAGATGCTGAATG
CAGGGCCGCTGGGGGGAGGGGCACTGGTCACGTGTTACTGGTGGTCACATTCGAAAGTCC
TTTCTTTCAACTGTCATGGACACGCTCAGCTGGGGTTTGTCGACAAGGGTGGTGGGTGGT
TCAGCGAGCCTCTGCCGCACCCCTTCTATCTGGATTGTAATGTGAATCTTTAGGATAATT
CCCTCAGTGACTTGTCAAGGTCTGTACTAAGGAGAATCGCAGGAGGCTGTGTGATTTGTA
GTGAGCCTTTGAAAATGGTTAGTAGCAAGTTCGGTTTAGCTCTTAGAATCTTTCCAAACA
ATCAAGCTGTGTGCTTAATTTACTCTGTTGTAAAGGGAGAAAGCGGAAATAATTTTTTAA
AAGTAGAGTGGAGATTTTCCTAATGTTTTTATCTACATGTGTAACTTGAGGAATGACAAT
GAGGAGAACCCAGCATCTGGCATAGAGGCAAATCATGTTTGAAAGCCACGAGTGTTTTCT
GCGCAGTCCGGCTCAGCCATCCTCTCCCGAACACCTGCTATGTACCAGGCACTAGTCACC
TGCTTGAAGGCTGGCAGTTCATTTCATGATCAGTGTTAAGTGTTTTCCTCCGTGAGAAGA
AAGCATAGGATACAAAAAAATATAAAGACTCTGCCCTCAGGCTGTTCTCTGTACAAGCTC
TGGTTCTGCAGCTTCCTAGCATGGCCTTGGGCGAGTTTCTTAGCCTCTCTGAGCCTGTTT
CCTCATCTGTAAAATGGGACTAGTGACATCTACCTTCAGGGTTGCTGGCAGAATTTGAAA
TAAAATGTGTAAGTTATCTAGCCCATTGTAGATGATCCAAAAGTGGTAGCCACTCACCCC
TTCACAAAACTAAAGTGCATGGACCATGGAGTCAAGAGTTAATGTACAACTGTATTATTT
GCAGGAAACCGGAAATGTGTTCACTTATTTCTTGTTCCCAAATAGGATTAACTGTGAAGA
CTAATTTATAAATGTGAACTTACTTAAGGAAAACGCAAGCTCTGAAGGTAATAGCTTGAA
TTTTGTTTTTATACTCAAGTTAATCCTCAGATGTCCCAAGCTGTCGTCCACTGACGTGGT
GACAGTTCAGCCCTGCAGACAGAGCACAAGCCCTTCCGCCCCACTGGTGTCCTGGTCAGG
CACTCTGACCCGTCTCCCTGGGGAGAAAGGACTGGGGCTGGGCCACACGCTGTTTCCATG
TGTGAACTCCGTTCTACTGTAACACTGTCAGGTTTGAGAGATTTTCTTCAGATGCAACCT
TTGCTTTGTACTTGTTCTCCATGGTTGAAATAAAATGGGGTGAGAGGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61848246|ref|XP_593903.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61848246|ref|XP_593903.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               155-1057, gnl|bosTau2|chr11 (72697034-72697916)
               

               
               155-1057, gnl|Hg17|chr9 (124192668-124193574)
               

               
               155-1057, gnl|Mm7|chr2 (38592589-38593390)
               


               
               1077-1728, gnl|bosTau2|chr11 (72697912-72698550)
               

               
               1077-1728, gnl|Hg17|chr9 (124193566-124194245)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               155-1057, gnl|bosTau2|chr11 (72697034-72697916)
               

               
               155-1057, gnl|Hg17|chr9 (124192668-124193574)
               

               
               155-1057, gnl|Mm7|chr2 (38592589-38593390)
               


               
               1077-1728, gnl|bosTau2|chr11 (72697912-72698550)
               

               
               1077-1728, gnl|Hg17|chr9 (124193566-124194245)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               fhi (0.339155)
               

               
               cty (0.20816)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               cty (0.20816)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	155-1057, gnl\|bosTau2\|chr11 (72697034-72697916)
	155-1057, gnl\|Hg17\|chr9 (124192668-124193574)
	155-1057, gnl\|Mm7\|chr2 (38592589-38593390)

	1077-1728, gnl\|bosTau2\|chr11 (72697912-72698550)
	1077-1728, gnl\|Hg17\|chr9 (124193566-124194245)

	fhi (0.339155)
	cty (0.20816)
	mgm (0.180343)
	mcp (0.170648)
	eye (0.170503)
	cut (0.169924)
	nje (0.16592)
	nco (0.161734)
	cag (0.151194)
	lun (0.150489)
	cst (0.140036)
	hlv (0.139256)
	che (0.136314)
	ese (0.126502)
	eep (0.122564)
	cly (0.120642)
	ecc (0.115035)
	jej (0.0989218)