Ss1.1-Tra1-TCH01C040101.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGACTGGAGACGGGCGGAGCGCCGGCTTCCCGGGTCTGTGTCCTCTAGTGAAACCAGG AGGATCCAAGAATTCTGAAGCTACAATGTTGTCAAGACTCTTCCGAATGCATGGCCTCTT TGTGGCCTCCCATCCCTGGGAAGTCATAGTGGGGACAGTGACACTGACCATCTGTATGAT GTCCATGAACATGTTTACTGGTAACGATAAGATCTGTGGTTGGAATTATGAATGTCCAAA GTTTGAAGAGGATGTTTTGAGCAGTGACATCATAATTCTGACAATAACACGATGCATAGC AATCCTGTATATTTACTTCCAGTTTCAGAATTTACGTCAACTTGGATCAAAATATATTTT GGGTATTGCCGGCCTCTTCACAATTTTCTCAAGTTTTGTATTCAGTACAGTTGTTATCCA TTTCCTAGATAAAGAATTGACAGGCTTGAATGAAGCTCTGCCCTTTTTCCTACTTTTGAT TGACCTTTCCAGAGCAAGTGCACTGGCAAAGTTTGCCCTCAGCTCCAACTCACAGGATGA AGTAAGGGAGAATATTGCTCGTGGAATGGCAATTTTAGGTCCCACATTCACCCTCGATGC TCTTGTAGAATGCCTTGTGATTGGAGTTGGCACCATGTCAGGGGTGCGTCAGCTTGAAAT TATGTGCTGCTTTGGCTGCATGTCAGTTCTCGCCAACTACTTCGTGTTCATGACTTTCTT CCCAGCTTGCGTGTCCTTGGTTTTAGAGCTTTCTCGGGAAAGCCGCGAGGGTCGTCCAAT TTGGCAGCTCAGCCATTTTGCCCGAGTTTTAGAAGAGGAAGAAAATAAACCAAATCCTGT TACTCAGAGAGTTAAAATAATTATGTCTCTAGGCTTGGTTCTTGTTCACGCACACAGTCG CTGGATAGCCGATCCTTCTCCTCAAAACAGTACGGCAGACAATTCTAAGGTTTCGTTAGG ATTGGATGAAAATGTGTCCAAGAGAATTGAACCAAGTGTTTCCCTCTGGCAGTTTTATCT GTCTAAAATGATCAGCATGGATATTGAACAAGTTATTACCCTAACTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGACTGGAGACGGGCGGAGCGCCGGCTTCCCGGGTCTGTGTCCTCTAGTGAAACCAGG AGGATCCAAGAATTCTGAAGCTACAATGTTGTCAAGACTCTTCCGAATGCATGGCCTCTT TGTGGCCTCCCATCCCTGGGAAGTCATAGTGGGGACAGTGACACTGACCATCTGTATGAT GTCCATGAACATGTTTACTGGTAACGATAAGATCTGTGGTTGGAATTATGAATGTCCAAA GTTTGAAGAGGATGTTTTGAGCAGTGACATCATAATTCTGACAATAACACGATGCATAGC AATCCTGTATATTTACTTCCAGTTTCAGAATTTACGTCAACTTGGATCAAAATATATTTT GGGTATTGCCGGCCTCTTCACAATTTTCTCAAGTTTTGTATTCAGTACAGTTGTTATCCA TTTCCTAGATAAAGAATTGACAGGCTTGAATGAAGCTCTGCCCTTTTTCCTACTTTTGAT TGACCTTTCCAGAGCAAGTGCACTGGCAAAGTTTGCCCTCAGCTCCAACTCACAGGATGA AGTAAGGGAGAATATTGCTCGTGGAATGGCAATTTTAGGTCCCACATTCACCCTCGATGC TCTTGTAGAATGCCTTGTGATTGGAGTTGGCACCATGTCAGGGGTGCGTCAGCTTGAAAT TATGTGCTGCTTTGGCTGCATGTCAGTTCTCGCCAACTACTTCGTGTTCATGACTTTCTT CCCAGCTTGCGTGTCCTTGGTTTTAGAGCTTTCTCGGGAAAGCCGCGAGGGTCGTCCAAT TTGGCAGCTCAGCCATTTTGCCCGAGTTTTAGAAGAGGAAGAAAATAAACCAAATCCTGT TACTCAGAGAGTTAAAATAATTATGTCTCTAGGCTTGGTTCTTGTTCACGCACACAGTCG CTGGATAGCCGATCCTTCTCCTCAAAACAGTACGGCAGACAATTCTAAGGTTTCGTTAGG ATTGGATGAAAATGTGTCCAAGAGAATTGAACCAAGTGTTTCCCTCTGGCAGTTTTATCT GTCTAAAATGATCAGCATGGATATTGAACAAGTTATTACCCTAACTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 61-251, gnl|bosTau2|chr10 (1909659-1909469) | |
| 61-251, gnl|canFam2|chr3 (33872957-33872762) | |
| 61-251, gnl|danRer3|chr5 (57345675-57345480) | |
| 61-251, gnl|dasNov1|scaffold_98292 (7393-7588) | |
| 61-251, gnl|echTel1|scaffold_287393 (29936-30123) | |
| 61-251, gnl|fr1|chrUn (212674390-212674206) | |
| 61-251, gnl|galGal2|chrZ (10098831-10099022) | |
| 61-251, gnl|hg17|chr5 (74674163-74674358) | |
| 61-251, gnl|Hg17|chr5 (74674162-74674352) | |
| 61-251, gnl|loxAfr1|scaffold_10127 (4628-4823) | |
| 61-251, gnl|mm7|chr13 (93736084-93735889) | |
| 61-251, gnl|Mm7|chr13 (93736083-93735893) | |
| 61-251, gnl|monDom2|scaffold_60 (9679759-9679954) | |
| 61-251, gnl|panTro1|chr4 (40749993-40749798) | |
| 61-251, gnl|rheMac2|chr6 (71542188-71542383) | |
| 61-251, gnl|rn3|chr2 (27064556-27064361) | |
| 61-251, gnl|tetNig1|chrUn_random (1515315-1515499) | |
| 61-251, gnl|xenTro1|scaffold_120 (1979738-1979926) | |
| 639-748, gnl|bosTau2|chr10 (1903313-1903204) | |
| 639-748, gnl|canFam2|chr3 (33866703-33866603) | |
| 639-748, gnl|danRer3|chr5 (57342486-57342390) | |
| 639-748, gnl|dasNov1|scaffold_65418 (5218-5118) | |
| 639-748, gnl|echTel1|scaffold_287393 (30513-30599) | |
| 639-748, gnl|fr1|chrUn (212672993-212672890) | |
| 639-748, gnl|galGal2|chrZ (10103392-10103479) | |
| 639-748, gnl|hg17|chr5 (74681607-74681707) | |
| 639-748, gnl|Hg17|chr5 (74681620-74681729) | |
| 639-748, gnl|loxAfr1|scaffold_10127 (9667-9767) | |
| 639-748, gnl|mm7|chr13 (93729614-93729513) | |
| 639-748, gnl|Mm7|chr13 (93729598-93729489) | |
| 639-748, gnl|monDom2|scaffold_60 (9687247-9687347) | |
| 639-748, gnl|oryCun1|scaffold_165063 (4403-4504) | |
| 639-748, gnl|panTro1|chr4 (40742544-40742444) | |
| 639-748, gnl|rheMac2|chr6 (71549653-71549753) | |
| 639-748, gnl|rn3|chr2 (27058290-27058190) | |
| 639-748, gnl|tetNig1|chrUn_random (1516540-1516644) | |
| 639-748, gnl|xenTro1|scaffold_120 (1982682-1982782) | |
| 858-1026, gnl|bosTau2|chr10 (1902560-1902392) | |
| 858-1026, gnl|Hg17|chr5 (74682362-74682530) | |
| 858-1026, gnl|Mm7|chr13 (93728756-93728588) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 61-251, gnl|bosTau2|chr10 (1909659-1909469) | |
| 61-251, gnl|canFam2|chr3 (33872957-33872762) | |
| 61-251, gnl|danRer3|chr5 (57345675-57345480) | |
| 61-251, gnl|dasNov1|scaffold_98292 (7393-7588) | |
| 61-251, gnl|echTel1|scaffold_287393 (29936-30123) | |
| 61-251, gnl|fr1|chrUn (212674390-212674206) | |
| 61-251, gnl|galGal2|chrZ (10098831-10099022) | |
| 61-251, gnl|hg17|chr5 (74674163-74674358) | |
| 61-251, gnl|Hg17|chr5 (74674162-74674352) | |
| 61-251, gnl|loxAfr1|scaffold_10127 (4628-4823) | |
| 61-251, gnl|mm7|chr13 (93736084-93735889) | |
| 61-251, gnl|Mm7|chr13 (93736083-93735893) | |
| 61-251, gnl|monDom2|scaffold_60 (9679759-9679954) | |
| 61-251, gnl|panTro1|chr4 (40749993-40749798) | |
| 61-251, gnl|rheMac2|chr6 (71542188-71542383) | |
| 61-251, gnl|rn3|chr2 (27064556-27064361) | |
| 61-251, gnl|tetNig1|chrUn_random (1515315-1515499) | |
| 61-251, gnl|xenTro1|scaffold_120 (1979738-1979926) | |
| 639-748, gnl|bosTau2|chr10 (1903313-1903204) | |
| 639-748, gnl|canFam2|chr3 (33866703-33866603) | |
| 639-748, gnl|danRer3|chr5 (57342486-57342390) | |
| 639-748, gnl|dasNov1|scaffold_65418 (5218-5118) | |
| 639-748, gnl|echTel1|scaffold_287393 (30513-30599) | |
| 639-748, gnl|fr1|chrUn (212672993-212672890) | |
| 639-748, gnl|galGal2|chrZ (10103392-10103479) | |
| 639-748, gnl|hg17|chr5 (74681607-74681707) | |
| 639-748, gnl|Hg17|chr5 (74681620-74681729) | |
| 639-748, gnl|loxAfr1|scaffold_10127 (9667-9767) | |
| 639-748, gnl|mm7|chr13 (93729614-93729513) | |
| 639-748, gnl|Mm7|chr13 (93729598-93729489) | |
| 639-748, gnl|monDom2|scaffold_60 (9687247-9687347) | |
| 639-748, gnl|oryCun1|scaffold_165063 (4403-4504) | |
| 639-748, gnl|panTro1|chr4 (40742544-40742444) | |
| 639-748, gnl|rheMac2|chr6 (71549653-71549753) | |
| 639-748, gnl|rn3|chr2 (27058290-27058190) | |
| 639-748, gnl|tetNig1|chrUn_random (1516540-1516644) | |
| 639-748, gnl|xenTro1|scaffold_120 (1982682-1982782) | |
| 858-1026, gnl|bosTau2|chr10 (1902560-1902392) | |
| 858-1026, gnl|Hg17|chr5 (74682362-74682530) | |
| 858-1026, gnl|Mm7|chr13 (93728756-93728588) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) | |
| ecc (0.115035) |