Non-Coding RNA Search

Ss1.1-Tra1-TCH01C040102.5

Sequence:


               
               AAAAAAAATCCAGACTTGCCTGGGAGGCGGCGAGAAACTTGCACTGGAAGCTTCAGCAAC
CAGCATTCGAGAAACTCCTCTTCACTTTAGCACGGTCTCCAGGACTCCGAGCCGAGATAG
AGCAAACTGCGGCGCGGTGAGAAAGAGAAGAGCAAGAGCGAGAGAGGGAGGGAGGGAGGG
AGACGCTCCAGCCTGGGAACTATAACTCCTCTGCAAGAGGCGGAGTACTCCTACCCCGCA
TCCTTTGGTGACTTTTCGCTCTTCGCCCACCTCCGCCCCGGCCGGGAGTTGAGCGGCCAG
CTCCGCAGCCGCACGCGTCCTCCCGCTCGGCGTGCGCTTGGCTCCGGGAGCCGGGAGGGC
CCGGCGATCGCGCCGCGGCCGCCGCGAGGGTGTGAGCGCGCGTGGGCGCCCGCGGAGCCG
GGGCCATGGTGCAGCAAACCAACAACGCCGAGAACACGGAAGCGCTGCTGGCCGGCGAGA
GCTCGGACTCGGGCGCCGGCCTGGAGCTGGGCATCGCCTCCTCCCCCACGCCCGGCTCCA
CAGCCTCCACGGGCGGCAAGGCCGACGACCCGAGCTGGTGCAAGACGCCAAGTGGGCACA
TCAAGCGGCCCATGAACGCCTTCATGGTGTGGTCGCAGATCGAGCGGCGCAAGATCATGG
AACAGTCGCCCGACATGCACAACGCCGAGATCTCCAAGCGGCTGGGCAAACGCTGGAAGC
TGCTCAAAGACAGCGACAAGATCCCTTTCATTCGGGAGGCGGAGCGGCTGCGCCTCAAGC
ACATGGCTGACTACCCCGACTACAAGTACCGGCCCAGGAAGAAGGTGAAGTCCGGCAACG
CCAACTCCAGCTCCTCCACCGCCGCCTCCTCGAAGCCGGGGGAGAAGGGTGACAAGGTCG
GTGGCAGCGGCGGGGGCGGCCACGGGGGCGGCGGCGGGAGCAGCAACGCGGGGGGAGGAG
GCGGCGGCGCGAGCGGCGGCGGCGGCGCCAACTCCAAACCCGCGCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAATCCAGACTTGCCTGGGAGGCGGCGAGAAACTTGCACTGGAAGCTTCAGCAAC
CAGCATTCGAGAAACTCCTCTTCACTTTAGCACGGTCTCCAGGACTCCGAGCCGAGATAG
AGCAAACTGCGGCGCGGTGAGAAAGAGAAGAGCAAGAGCGAGAGAGGGAGGGAGGGAGGG
AGACGCTCCAGCCTGGGAACTATAACTCCTCTGCAAGAGGCGGAGTACTCCTACCCCGCA
TCCTTTGGTGACTTTTCGCTCTTCGCCCACCTCCGCCCCGGCCGGGAGTTGAGCGGCCAG
CTCCGCAGCCGCACGCGTCCTCCCGCTCGGCGTGCGCTTGGCTCCGGGAGCCGGGAGGGC
CCGGCGATCGCGCCGCGGCCGCCGCGAGGGTGTGAGCGCGCGTGGGCGCCCGCGGAGCCG
GGGCCATGGTGCAGCAAACCAACAACGCCGAGAACACGGAAGCGCTGCTGGCCGGCGAGA
GCTCGGACTCGGGCGCCGGCCTGGAGCTGGGCATCGCCTCCTCCCCCACGCCCGGCTCCA
CAGCCTCCACGGGCGGCAAGGCCGACGACCCGAGCTGGTGCAAGACGCCAAGTGGGCACA
TCAAGCGGCCCATGAACGCCTTCATGGTGTGGTCGCAGATCGAGCGGCGCAAGATCATGG
AACAGTCGCCCGACATGCACAACGCCGAGATCTCCAAGCGGCTGGGCAAACGCTGGAAGC
TGCTCAAAGACAGCGACAAGATCCCTTTCATTCGGGAGGCGGAGCGGCTGCGCCTCAAGC
ACATGGCTGACTACCCCGACTACAAGTACCGGCCCAGGAAGAAGGTGAAGTCCGGCAACG
CCAACTCCAGCTCCTCCACCGCCGCCTCCTCGAAGCCGGGGGAGAAGGGTGACAAGGTCG
GTGGCAGCGGCGGGGGCGGCCACGGGGGCGGCGGCGGGAGCAGCAACGCGGGGGGAGGAG
GCGGCGGCGCGAGCGGCGGCGGCGGCGCCAACTCCAAACCCGCGCAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61842709|ref|XP_583491.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61842709|ref|XP_583491.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               153-271, + strand, RNAz p=0.974526
               

               
               632-751, - strand, RNAz p=0.573866

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-271, + strand, RNAz p=0.974526
               

               
               632-751, - strand, RNAz p=0.573866

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003107, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003107, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1008, gnl|bosTau2|chr23 (29379699-29378713)
               

               
               1-1008, gnl|Hg17|chr6 (21702340-21703330)
               

               
               1-1008, gnl|Mm7|chr13 (28318862-28318028)
               


               
               601-992, gnl|bosTau2|chr12 (47321965-47321565)
               

               
               601-992, gnl|Hg17|chr13 (111770125-111770540)
               

               
               601-992, gnl|Mm7|chr8 (12370604-12371019)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1008, gnl|bosTau2|chr23 (29379699-29378713)
               

               
               1-1008, gnl|Hg17|chr6 (21702340-21703330)
               

               
               1-1008, gnl|Mm7|chr13 (28318862-28318028)
               


               
               601-992, gnl|bosTau2|chr12 (47321965-47321565)
               

               
               601-992, gnl|Hg17|chr13 (111770125-111770540)
               

               
               601-992, gnl|Mm7|chr8 (12370604-12371019)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	153-271, + strand, RNAz p=0.974526
	632-751, - strand, RNAz p=0.573866

	1-1008, gnl\|bosTau2\|chr23 (29379699-29378713)
	1-1008, gnl\|Hg17\|chr6 (21702340-21703330)
	1-1008, gnl\|Mm7\|chr13 (28318862-28318028)

	601-992, gnl\|bosTau2\|chr12 (47321965-47321565)
	601-992, gnl\|Hg17\|chr13 (111770125-111770540)
	601-992, gnl\|Mm7\|chr8 (12370604-12371019)