Ss1.1-Tra1-TCH01C050039.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATAATGTCATAATCAAAACTGCAGCTAATACTCGCTGAGCACTTGTGGCCACAAATGGAT GAGAGCCGAGGGCCGAGGACTCTTCGTGTCCAGTTTCTACTACCTGCCACCTGCTACGAA CCCACCCTGGAGAAGATGGCCAACCCTCGGACCTTCACCTTCCTCTGTGGTTTGCTGGCC ACCCACCTGGTGGCAGCCACCCTCTGCCCTCCTGTGGTTCTCAGGCTCGGTCCAGAAGTC ATCAAAGAAAAGCTGACACAGAAGCTAAAGGATCGCGATGCTGTCCACGTCCTTCAGCAG CTGCCCCTGCTCGATGCCATGCAGGAGTCATCCCAGGGTGTCCTGGCCAGACTGGTGAGC TCCATCCTGAAGTATATCACCTGGCTGAAAGTCACCTCAGCCAGCATCCTCCAGCTGCAG GTGCAACCCCTACCCAACGGCCAGGAGCTGTTGGTCAAGATCCCTCTGGACATGGTAGCT GGATTGAACACGCCCCTGGTCAAGACCATTGTGGAGCTGCACATGCAGGTGGAGGTTGAA GCCATCATCCACGTGGAGACCAGTGAGACCGGCGAAGACCAGCTGGTCCTCAGCAATTGC TCCAACACCCGAGGGAGCCTGCGCATCAGCCTGCTGCATAAGCTCTCCTTCCTTCTCAAC TCCATAGCTGAAAAGGTCATAAAGCTCCTGGTGCCAGCCCTGCCCAAAGTGGTGAAAGGC GAGCTGTGTCCTGTGCTCAGGGAGGCCTTTGAGGACGTGCGTGCGGACCTCCTGAACCTG GTGAAGTTGCCCACTTCTCTCAAGTCTGACCGCCTGGAGTTTGAACTTCTGTCTCAAGCC ATCGAGGGTAGTGCTGTCCAGTTGAACCTAGGGGCCAAGTTGTTGGATTCAGATGGAAAT GTGATCATGCTCTTCAATGACACTGTGGATTCCTTGAATCTTCCTCCCTTGTCCGATGTC CCTTTTAGCCTCATTGTCAGGAAGGATGTGGTGAATGCTGCAGTAGTTGCCTTTCTCCCT CCAGAAGAACTCATGGTCCTATTGGACTACGTGCTTCCTGAGCTGGCCCACCGGCTGAAG TTAAGCATCAAGGCGATCAGTGAAAAGGCTGCAGATAAGCTGGAGCCCACACAGATTGTG AAGATCCTGACTCAGGACACCCCGGAGTTCCTTGTGGACCAGGGCAATGCCAAGGTGGCC CAACTGATCGTGCTGGAAGTGTTCCCCACCAATGAAGACCGCCGCCCCCTCTTCACCCTG GGCATCGAAGCCACCTCGGAAGCTCAGTTTTACACTGAAGATGATCGACTTATGCTCAAC CTTTATGATCTCAGCTCTGATCGGATTCACCTGATGAACTCAGACATTGGCCTGTTCAAC CCTGAGCTTCTGAAAGACATCATCACCGAGATCCTCATCTCCGTCCTGCTGCCAAATGAG AACGGCAAATTAAGATCTGGGATCCCGGTATCAATGGTGAAGGCCTTGGGATATGAGACA GCGTCCTGGTCTCTGATCAAGGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATAATGTCATAATCAAAACTGCAGCTAATACTCGCTGAGCACTTGTGGCCACAAATGGAT GAGAGCCGAGGGCCGAGGACTCTTCGTGTCCAGTTTCTACTACCTGCCACCTGCTACGAA CCCACCCTGGAGAAGATGGCCAACCCTCGGACCTTCACCTTCCTCTGTGGTTTGCTGGCC ACCCACCTGGTGGCAGCCACCCTCTGCCCTCCTGTGGTTCTCAGGCTCGGTCCAGAAGTC ATCAAAGAAAAGCTGACACAGAAGCTAAAGGATCGCGATGCTGTCCACGTCCTTCAGCAG CTGCCCCTGCTCGATGCCATGCAGGAGTCATCCCAGGGTGTCCTGGCCAGACTGGTGAGC TCCATCCTGAAGTATATCACCTGGCTGAAAGTCACCTCAGCCAGCATCCTCCAGCTGCAG GTGCAACCCCTACCCAACGGCCAGGAGCTGTTGGTCAAGATCCCTCTGGACATGGTAGCT GGATTGAACACGCCCCTGGTCAAGACCATTGTGGAGCTGCACATGCAGGTGGAGGTTGAA GCCATCATCCACGTGGAGACCAGTGAGACCGGCGAAGACCAGCTGGTCCTCAGCAATTGC TCCAACACCCGAGGGAGCCTGCGCATCAGCCTGCTGCATAAGCTCTCCTTCCTTCTCAAC TCCATAGCTGAAAAGGTCATAAAGCTCCTGGTGCCAGCCCTGCCCAAAGTGGTGAAAGGC GAGCTGTGTCCTGTGCTCAGGGAGGCCTTTGAGGACGTGCGTGCGGACCTCCTGAACCTG GTGAAGTTGCCCACTTCTCTCAAGTCTGACCGCCTGGAGTTTGAACTTCTGTCTCAAGCC ATCGAGGGTAGTGCTGTCCAGTTGAACCTAGGGGCCAAGTTGTTGGATTCAGATGGAAAT GTGATCATGCTCTTCAATGACACTGTGGATTCCTTGAATCTTCCTCCCTTGTCCGATGTC CCTTTTAGCCTCATTGTCAGGAAGGATGTGGTGAATGCTGCAGTAGTTGCCTTTCTCCCT CCAGAAGAACTCATGGTCCTATTGGACTACGTGCTTCCTGAGCTGGCCCACCGGCTGAAG TTAAGCATCAAGGCGATCAGTGAAAAGGCTGCAGATAAGCTGGAGCCCACACAGATTGTG AAGATCCTGACTCAGGACACCCCGGAGTTCCTTGTGGACCAGGGCAATGCCAAGGTGGCC CAACTGATCGTGCTGGAAGTGTTCCCCACCAATGAAGACCGCCGCCCCCTCTTCACCCTG GGCATCGAAGCCACCTCGGAAGCTCAGTTTTACACTGAAGATGATCGACTTATGCTCAAC CTTTATGATCTCAGCTCTGATCGGATTCACCTGATGAACTCAGACATTGGCCTGTTCAAC CCTGAGCTTCTGAAAGACATCATCACCGAGATCCTCATCTCCGTCCTGCTGCCAAATGAG AACGGCAAATTAAGATCTGGGATCCCGGTATCAATGGTGAAGGCCTTGGGATATGAGACA GCGTCCTGGTCTCTGATCAAGGAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 104-250, gnl|bosTau2|chr13 (43693764-43693618) | |
| 104-250, gnl|canFam2|chr24 (25484382-25484802) | |
| 104-250, gnl|dasNov1|scaffold_59140 (1617-1207) | |
| 104-250, gnl|echTel1|scaffold_324870 (7654-7300) | |
| 104-250, gnl|hg17|chr20 (31337308-31337665) | |
| 104-250, gnl|Hg17|chr20 (31337503-31337655) | |
| 104-250, gnl|loxAfr1|scaffold_8448 (32501-32914) | |
| 104-250, gnl|mm7|chr2 (153943253-153943597) | |
| 104-250, gnl|Mm7|chr2 (153943434-153943587) | |
| 104-250, gnl|oryCun1|scaffold_207284 (322-673) | |
| 104-250, gnl|panTro1|chr21 (33315126-33315483) | |
| 104-250, gnl|rheMac2|chr10 (31300260-31299899) | |
| 104-250, gnl|rn3|chr3 (144519135-144519497) | |
| 489-642, gnl|bosTau2|chr13 (43689324-43689171) | |
| 489-642, gnl|canFam2|chr24 (25487428-25487720) | |
| 489-642, gnl|echTel1|scaffold_324870 (2792-2435) | |
| 489-642, gnl|hg17|chr20 (31342126-31342569) | |
| 489-642, gnl|Hg17|chr20 (31342421-31342574) | |
| 489-642, gnl|loxAfr1|scaffold_8448 (37174-37632) | |
| 489-642, gnl|mm7|chr2 (153947078-153947412) | |
| 489-642, gnl|Mm7|chr2 (153947264-153947417) | |
| 489-642, gnl|oryCun1|scaffold_207284 (4788-5333) | |
| 489-642, gnl|panTro1|chr21 (33319909-33320352) | |
| 489-642, gnl|rheMac2|chr10 (31295447-31295004) | |
| 489-642, gnl|rn3|chr3 (144522884-144523275) | |
| 873-1080, gnl|bosTau2|chr13 (43681514-43681304) | |
| 873-1080, gnl|canFam2|chr24 (25495284-25495756) | |
| 873-1080, gnl|echTel1|scaffold_219338 (3072-2642) | |
| 873-1080, gnl|hg17|chr20 (31352683-31353153) | |
| 873-1080, gnl|Hg17|chr20 (31352699-31352909) | |
| 873-1080, gnl|loxAfr1|scaffold_8448 (45753-46223) | |
| 873-1080, gnl|mm7|chr2 (153953773-153954181) | |
| 873-1080, gnl|Mm7|chr2 (153953791-153953981) | |
| 873-1080, gnl|panTro1|chr21 (33330489-33330959) | |
| 873-1080, gnl|rheMac2|chr10 (31285064-31284585) | |
| 873-1080, gnl|rn3|chr3 (144532763-144533177) | |
| 1106-1267, gnl|bosTau2|chr13 (43679888-43679727) | |
| 1106-1267, gnl|canFam2|chr24 (25496507-25497114) | |
| 1106-1267, gnl|dasNov1|scaffold_119139 (2988-3604) | |
| 1106-1267, gnl|echTel1|scaffold_219338 (1486-819) | |
| 1106-1267, gnl|hg17|chr20 (31354061-31354705) | |
| 1106-1267, gnl|Hg17|chr20 (31354381-31354542) | |
| 1106-1267, gnl|loxAfr1|scaffold_58815 (11255-10614) | |
| 1106-1267, gnl|mm7|chr2 (153954547-153955137) | |
| 1106-1267, gnl|Mm7|chr2 (153954850-153955011) | |
| 1106-1267, gnl|oryCun1|scaffold_151262 (4502-5047) | |
| 1106-1267, gnl|panTro1|chr21 (33331865-33332507) | |
| 1106-1267, gnl|rheMac2|chr10 (31283680-31283039) | |
| 1106-1267, gnl|rn3|chr3 (144533572-144534169) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 104-250, gnl|bosTau2|chr13 (43693764-43693618) | |
| 104-250, gnl|canFam2|chr24 (25484382-25484802) | |
| 104-250, gnl|dasNov1|scaffold_59140 (1617-1207) | |
| 104-250, gnl|echTel1|scaffold_324870 (7654-7300) | |
| 104-250, gnl|hg17|chr20 (31337308-31337665) | |
| 104-250, gnl|Hg17|chr20 (31337503-31337655) | |
| 104-250, gnl|loxAfr1|scaffold_8448 (32501-32914) | |
| 104-250, gnl|mm7|chr2 (153943253-153943597) | |
| 104-250, gnl|Mm7|chr2 (153943434-153943587) | |
| 104-250, gnl|oryCun1|scaffold_207284 (322-673) | |
| 104-250, gnl|panTro1|chr21 (33315126-33315483) | |
| 104-250, gnl|rheMac2|chr10 (31300260-31299899) | |
| 104-250, gnl|rn3|chr3 (144519135-144519497) | |
| 489-642, gnl|bosTau2|chr13 (43689324-43689171) | |
| 489-642, gnl|canFam2|chr24 (25487428-25487720) | |
| 489-642, gnl|echTel1|scaffold_324870 (2792-2435) | |
| 489-642, gnl|hg17|chr20 (31342126-31342569) | |
| 489-642, gnl|Hg17|chr20 (31342421-31342574) | |
| 489-642, gnl|loxAfr1|scaffold_8448 (37174-37632) | |
| 489-642, gnl|mm7|chr2 (153947078-153947412) | |
| 489-642, gnl|Mm7|chr2 (153947264-153947417) | |
| 489-642, gnl|oryCun1|scaffold_207284 (4788-5333) | |
| 489-642, gnl|panTro1|chr21 (33319909-33320352) | |
| 489-642, gnl|rheMac2|chr10 (31295447-31295004) | |
| 489-642, gnl|rn3|chr3 (144522884-144523275) | |
| 873-1080, gnl|bosTau2|chr13 (43681514-43681304) | |
| 873-1080, gnl|canFam2|chr24 (25495284-25495756) | |
| 873-1080, gnl|echTel1|scaffold_219338 (3072-2642) | |
| 873-1080, gnl|hg17|chr20 (31352683-31353153) | |
| 873-1080, gnl|Hg17|chr20 (31352699-31352909) | |
| 873-1080, gnl|loxAfr1|scaffold_8448 (45753-46223) | |
| 873-1080, gnl|mm7|chr2 (153953773-153954181) | |
| 873-1080, gnl|Mm7|chr2 (153953791-153953981) | |
| 873-1080, gnl|panTro1|chr21 (33330489-33330959) | |
| 873-1080, gnl|rheMac2|chr10 (31285064-31284585) | |
| 873-1080, gnl|rn3|chr3 (144532763-144533177) | |
| 1106-1267, gnl|bosTau2|chr13 (43679888-43679727) | |
| 1106-1267, gnl|canFam2|chr24 (25496507-25497114) | |
| 1106-1267, gnl|dasNov1|scaffold_119139 (2988-3604) | |
| 1106-1267, gnl|echTel1|scaffold_219338 (1486-819) | |
| 1106-1267, gnl|hg17|chr20 (31354061-31354705) | |
| 1106-1267, gnl|Hg17|chr20 (31354381-31354542) | |
| 1106-1267, gnl|loxAfr1|scaffold_58815 (11255-10614) | |
| 1106-1267, gnl|mm7|chr2 (153954547-153955137) | |
| 1106-1267, gnl|Mm7|chr2 (153954850-153955011) | |
| 1106-1267, gnl|oryCun1|scaffold_151262 (4502-5047) | |
| 1106-1267, gnl|panTro1|chr21 (33331865-33332507) | |
| 1106-1267, gnl|rheMac2|chr10 (31283680-31283039) | |
| 1106-1267, gnl|rn3|chr3 (144533572-144534169) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| tra (0.984737) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nmm (0.132802) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.984737) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nmm (0.132802) |