Ss1.1-Tra1-TCH01C050086.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGCGCACGCTGAAGAGAGTCGGCGGCTGCTGCGGGTGGATCAAGTCAGTTCTCTCTGA TTGAAGAGCGCGGCGCGGGGCCCCAGTGCGGGATCCATATACATACCTCAGAATGCCGGG TCTGAGTTGTAGATTTTATCAGCACAAATTTCCTGAGGTGGAGGATGTAGTGATGGTGAA TGTGAGGTCCATTGCTGAAATGGGAGCTTATGTCAGCTTGCTGGAATACAACAACATCGA AGGCATGATTCTTCTTAGTGAGCTCTCCAGAAGGCGTATCCGTTCTATAAACAAACTCAT CCGAATTGGCAGGAATGAATGTGTGGTTGTCATTAGAGTGGACAAAGAAAAAGGATATAT TGATTTATCAAAAAGAAGAGTTTCTCCAGAGGAAGCAATCAAATGTGAAGATAAATTCAC AAAATCCAAAACTGTTTACAGCATTCTTCGTCATGTTGCTGAGGTGTTGGAATACACCAA GGATGAGCAGCTGGAAAGCCTGTTCCAGAGAACTGCCTGGGTCTTTGATGACAAGTACAA GAGACCAGGATATGGTGCCTATGATGCATTTAAGCATGCAGTCTCAGACCCATCTATTTT GGATAGCTTAGACTTGAATGAAGATGAACGGGAAGTACTCATTAACAATATTAATAGGCG TTTGACCCCACAGGCTGTCAAAATTCGAGCAGATATTGAAGTGGCTTGTTATGGTTATGA AGGCATTGATGCCGTGAAAGAAGCCTTGAGAGCAGGTTTGAATTGTTCTACAGAAACCAT GCCCATCAAGATTAATCTAATAGCTCCTCCTCGGTATGTAATGACTACAACCACCCTGGA GAGAACAGAAGGTCTCTCTGTCCTTAATCAAGCTATGGCTGTTATAAAAGAAAAGATTGA GGAAAAGAGGGGCGTTTTCAATGTTCAAATGGAGCCCAAAGTGGTTACAGATACAGATGA GACCGAACTTGCAAGGCAGCTGGAGAGGCTTGAGAGAGAAAATGCAGAAGTGGATGGAGA TGATGATGCAGAGGAAATGGAAGCCAAAGCTGAAGATTAACTTTATGGGGAACAGAGTCC AGTTTAAGGAACACAAAGCAGCCTTCCTGGCTGTAAACCCTAGACTTGAAAGTTTTCCAG TATTGAAAACTTCAAAGCTGAATATTTTTTATTTCTAAGTATTTAAATGTTCTGACAGAC CAAAACATGAAATGCCCTCCTAAATGTCAGCTGTTTTCACACAGTAGCTCCAACACATTG AGCATTTTTTAAAGGAGTGGCCTGATTTCACTAGACAAATCTTTAAAAACAGTCATAAAA TTGGGCTCGTGATTTCCATTTTTGATGTCTCCAGATTGGCACCCCTTTGTAGTTCAGTGC CTCCATGAAATTTACCGGGGCATCCAAAGCAGATAGTCCCAACCTTTCTATATAAAATGT ATCAAACAAACATTAAATAAATTTCTGGGATATTTAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGCGCACGCTGAAGAGAGTCGGCGGCTGCTGCGGGTGGATCAAGTCAGTTCTCTCTGA TTGAAGAGCGCGGCGCGGGGCCCCAGTGCGGGATCCATATACATACCTCAGAATGCCGGG TCTGAGTTGTAGATTTTATCAGCACAAATTTCCTGAGGTGGAGGATGTAGTGATGGTGAA TGTGAGGTCCATTGCTGAAATGGGAGCTTATGTCAGCTTGCTGGAATACAACAACATCGA AGGCATGATTCTTCTTAGTGAGCTCTCCAGAAGGCGTATCCGTTCTATAAACAAACTCAT CCGAATTGGCAGGAATGAATGTGTGGTTGTCATTAGAGTGGACAAAGAAAAAGGATATAT TGATTTATCAAAAAGAAGAGTTTCTCCAGAGGAAGCAATCAAATGTGAAGATAAATTCAC AAAATCCAAAACTGTTTACAGCATTCTTCGTCATGTTGCTGAGGTGTTGGAATACACCAA GGATGAGCAGCTGGAAAGCCTGTTCCAGAGAACTGCCTGGGTCTTTGATGACAAGTACAA GAGACCAGGATATGGTGCCTATGATGCATTTAAGCATGCAGTCTCAGACCCATCTATTTT GGATAGCTTAGACTTGAATGAAGATGAACGGGAAGTACTCATTAACAATATTAATAGGCG TTTGACCCCACAGGCTGTCAAAATTCGAGCAGATATTGAAGTGGCTTGTTATGGTTATGA AGGCATTGATGCCGTGAAAGAAGCCTTGAGAGCAGGTTTGAATTGTTCTACAGAAACCAT GCCCATCAAGATTAATCTAATAGCTCCTCCTCGGTATGTAATGACTACAACCACCCTGGA GAGAACAGAAGGTCTCTCTGTCCTTAATCAAGCTATGGCTGTTATAAAAGAAAAGATTGA GGAAAAGAGGGGCGTTTTCAATGTTCAAATGGAGCCCAAAGTGGTTACAGATACAGATGA GACCGAACTTGCAAGGCAGCTGGAGAGGCTTGAGAGAGAAAATGCAGAAGTGGATGGAGA TGATGATGCAGAGGAAATGGAAGCCAAAGCTGAAGATTAACTTTATGGGGAACAGAGTCC AGTTTAAGGAACACAAAGCAGCCTTCCTGGCTGTAAACCCTAGACTTGAAAGTTTTCCAG TATTGAAAACTTCAAAGCTGAATATTTTTTATTTCTAAGTATTTAAATGTTCTGACAGAC CAAAACATGAAATGCCCTCCTAAATGTCAGCTGTTTTCACACAGTAGCTCCAACACATTG AGCATTTTTTAAAGGAGTGGCCTGATTTCACTAGACAAATCTTTAAAAACAGTCATAAAA TTGGGCTCGTGATTTCCATTTTTGATGTCTCCAGATTGGCACCCCTTTGTAGTTCAGTGC CTCCATGAAATTTACCGGGGCATCCAAAGCAGATAGTCCCAACCTTTCTATATAAAATGT ATCAAACAAACATTAAATAAATTTCTGGGATATTTAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 109-227, + strand, RNAz p=0.570544 | |
| 434-585, + strand, RNAz p=0.66909 | |
| 1052-1368, - strand, RNAz p=0.883481 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 109-227, + strand, RNAz p=0.570544 | |
| 434-585, + strand, RNAz p=0.66909 | |
| 1052-1368, - strand, RNAz p=0.883481 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BX161521, + |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 109-354, gnl|bosTau2|chr10 (54267886-54267641) | |
| 109-354, gnl|Hg17|chr14 (66901234-66901479) | |
| 109-354, gnl|Mm7|chr12 (76825195-76825440) | |
| 434-585, gnl|bosTau2|chr10 (54260528-54260377) | |
| 434-585, gnl|canFam2|chr8 (44399188-44399389) | |
| 434-585, gnl|danRer3|chr17 (23577147-23577321) | |
| 434-585, gnl|dasNov1|scaffold_10072 (49359-49560) | |
| 434-585, gnl|echTel1|scaffold_320162 (27087-26887) | |
| 434-585, gnl|fr1|chrUn (228413840-228413677) | |
| 434-585, gnl|galGal2|chr5 (25870969-25870771) | |
| 434-585, gnl|hg17|chr14 (66912903-66913104) | |
| 434-585, gnl|Hg17|chr14 (66912909-66913060) | |
| 434-585, gnl|loxAfr1|scaffold_2993 (41125-40924) | |
| 434-585, gnl|mm7|chr12 (76835758-76835972) | |
| 434-585, gnl|Mm7|chr12 (76835764-76835915) | |
| 434-585, gnl|monDom2|scaffold_8 (82616160-82616335) | |
| 434-585, gnl|oryCun1|scaffold_178824 (4584-4785) | |
| 434-585, gnl|panTro1|chr15 (66528776-66528977) | |
| 434-585, gnl|rheMac2|chr7 (130482177-130482378) | |
| 434-585, gnl|rn3|chr6 (101514440-101514652) | |
| 434-585, gnl|tetNig1|chr14 (2297105-2296942) | |
| 434-585, gnl|xenTro1|scaffold_7 (722390-722188) | |
| 586-695, gnl|bosTau2|chr10 (54256382-54256273) | |
| 586-695, gnl|canFam2|chr8 (44402980-44403114) | |
| 586-695, gnl|danRer3|chr17 (23579790-23579897) | |
| 586-695, gnl|dasNov1|scaffold_8106 (1647-1534) | |
| 586-695, gnl|echTel1|scaffold_193498 (4095-4214) | |
| 586-695, gnl|fr1|chrUn (228413619-228413499) | |
| 586-695, gnl|galGal2|chr5 (25869244-25869124) | |
| 586-695, gnl|hg17|chr14 (66917119-66917239) | |
| 586-695, gnl|Hg17|chr14 (66917129-66917238) | |
| 586-695, gnl|loxAfr1|scaffold_2993 (37548-37428) | |
| 586-695, gnl|mm7|chr12 (76838613-76838733) | |
| 586-695, gnl|Mm7|chr12 (76838623-76838732) | |
| 586-695, gnl|monDom2|scaffold_8 (82618064-82618184) | |
| 586-695, gnl|oryCun1|scaffold_178824 (9526-9646) | |
| 586-695, gnl|panTro1|chr15 (66532709-66532829) | |
| 586-695, gnl|rheMac2|chr7 (130486151-130486271) | |
| 586-695, gnl|rn3|chr6 (101518398-101518518) | |
| 586-695, gnl|tetNig1|chr14 (2296850-2296738) | |
| 933-1477, gnl|bosTau2|chr10 (54252714-54252169) | |
| 933-1477, gnl|Hg17|chr14 (66919783-66920330) | |
| 933-1477, gnl|Mm7|chr12 (76843461-76843993) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 109-354, gnl|bosTau2|chr10 (54267886-54267641) | |
| 109-354, gnl|Hg17|chr14 (66901234-66901479) | |
| 109-354, gnl|Mm7|chr12 (76825195-76825440) | |
| 434-585, gnl|bosTau2|chr10 (54260528-54260377) | |
| 434-585, gnl|canFam2|chr8 (44399188-44399389) | |
| 434-585, gnl|danRer3|chr17 (23577147-23577321) | |
| 434-585, gnl|dasNov1|scaffold_10072 (49359-49560) | |
| 434-585, gnl|echTel1|scaffold_320162 (27087-26887) | |
| 434-585, gnl|fr1|chrUn (228413840-228413677) | |
| 434-585, gnl|galGal2|chr5 (25870969-25870771) | |
| 434-585, gnl|hg17|chr14 (66912903-66913104) | |
| 434-585, gnl|Hg17|chr14 (66912909-66913060) | |
| 434-585, gnl|loxAfr1|scaffold_2993 (41125-40924) | |
| 434-585, gnl|mm7|chr12 (76835758-76835972) | |
| 434-585, gnl|Mm7|chr12 (76835764-76835915) | |
| 434-585, gnl|monDom2|scaffold_8 (82616160-82616335) | |
| 434-585, gnl|oryCun1|scaffold_178824 (4584-4785) | |
| 434-585, gnl|panTro1|chr15 (66528776-66528977) | |
| 434-585, gnl|rheMac2|chr7 (130482177-130482378) | |
| 434-585, gnl|rn3|chr6 (101514440-101514652) | |
| 434-585, gnl|tetNig1|chr14 (2297105-2296942) | |
| 434-585, gnl|xenTro1|scaffold_7 (722390-722188) | |
| 586-695, gnl|bosTau2|chr10 (54256382-54256273) | |
| 586-695, gnl|canFam2|chr8 (44402980-44403114) | |
| 586-695, gnl|danRer3|chr17 (23579790-23579897) | |
| 586-695, gnl|dasNov1|scaffold_8106 (1647-1534) | |
| 586-695, gnl|echTel1|scaffold_193498 (4095-4214) | |
| 586-695, gnl|fr1|chrUn (228413619-228413499) | |
| 586-695, gnl|galGal2|chr5 (25869244-25869124) | |
| 586-695, gnl|hg17|chr14 (66917119-66917239) | |
| 586-695, gnl|Hg17|chr14 (66917129-66917238) | |
| 586-695, gnl|loxAfr1|scaffold_2993 (37548-37428) | |
| 586-695, gnl|mm7|chr12 (76838613-76838733) | |
| 586-695, gnl|Mm7|chr12 (76838623-76838732) | |
| 586-695, gnl|monDom2|scaffold_8 (82618064-82618184) | |
| 586-695, gnl|oryCun1|scaffold_178824 (9526-9646) | |
| 586-695, gnl|panTro1|chr15 (66532709-66532829) | |
| 586-695, gnl|rheMac2|chr7 (130486151-130486271) | |
| 586-695, gnl|rn3|chr6 (101518398-101518518) | |
| 586-695, gnl|tetNig1|chr14 (2296850-2296738) | |
| 933-1477, gnl|bosTau2|chr10 (54252714-54252169) | |
| 933-1477, gnl|Hg17|chr14 (66919783-66920330) | |
| 933-1477, gnl|Mm7|chr12 (76843461-76843993) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| hea (0.817996) | |
| tes (0.623441) | |
| amn (0.417711) | |
| col (0.390016) | |
| ton (0.351) | |
| sin (0.349895) | |
| vin (0.332557) | |
| tra (0.246184) | |
| clu (0.239292) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mas (0.210305) | |
| ldo (0.194005) | |
| rec (0.17307) | |
| eye (0.170503) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| che (0.136314) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.817996) | |
| tes (0.623441) | |
| amn (0.417711) | |
| col (0.390016) | |
| ton (0.351) | |
| sin (0.349895) | |
| vin (0.332557) | |
| tra (0.246184) | |
| clu (0.239292) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mas (0.210305) | |
| ldo (0.194005) | |
| rec (0.17307) | |
| eye (0.170503) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| che (0.136314) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |