Non-Coding RNA Search

Ss1.1-Tra1-TCH01C060084.5

Sequence:


               
               TCCTTACATTTTAGTGCCTGTGTTTTTTAAATACCTTACTTAAAAGACATCTTTCTAATC
CCCATCGTTATATTGCTCATGTTTTACTTTCCCTGAATTTTGAGAGTGGTCCCTTTTTGT
ATCCTTTCTCACAATCCACACACTTTTAATTTCCTCTGTGCTTCTCTTCTTGGTCGCAGT
GAAATTATTGCCAGTGGACTGTGAGAGAAAAACAGATGAGGTGAGTTTGTGTTTCTCTAT
CTTTCATTATTCCTCCCAAAGATGTTGGCTTCCATCATGAGGTAAACTGGCCCATAAAGA
TATCATAATGGGATCATTTTCATGATATCTGCCTGTAATGTACCAGAATGGCATCGTGTT
CTGTGATGTTTGTGTCATACTCAATTGTGGCAGTGAATGAGCACTTGAAACGGAGAGGAT
TGAGCTCCTGAGCTCCATCCCCGGGCTTGTTACCGGAGCTCTCCCATCAATCACGGTACT
AAAGACTTTGATCTGCCTGAGCCGATGGGGAACTGAGTTGGATGCTGTAAGTTGTGGTTG
AATAACCTCTCAAGCCCCCTGGCTTCCATATAAAGGCTCGCATCTTTTTAATGTCATGAG
ACCGGGGTCTCAATTGCGCAATCTCCGGTCGATGTCTGTGGCTCTGAAAATACTGTTCTG
ATTTGAAACGTCATCCGGGGCTTGTTTTAAACACATCTGAAGTGGAGTTAGCCCTCTTAG
TCTATAGATTTGTTTTATGAAGCTTTAATGTTCCCTACAAATAATATTTGGGAAGGTGAG
CAGTCCCATCCATTTATGAGTCATGAAAACAGCATTAGCGAGAAGATGGGATGCTGGGAC
AGGTGGCAGTGTGGGGAAGATACGAGGCAGTAAATTTTCAGGTCGTAAATCCTACCAGGA
GGAGTCTTGTGCTGCCAGAGGGCGTGACTTAGTGGTATAAGTGTGCAGGTCACCAGGGGC
TGGAGAGAAGCCACTTGAGGTTATTCCCAGGCCCATGCATGGACTCTTACCCACGTAACC
AGGGGCCGTCCTGATGCAGACAGCCAGTTTTATTTCTCTTTGGCTTCTGCTGTGTCATAT
TTGGGGGTGTTTTTATTACATGTATTTATTGCGTGCATCCACCAGATATCTTGGCTTCCC
TACTGTTTTGTAAAAACAGGTTCAGGGTAAGTATTAGCTGCCTTCTCAAAAAAACTGCAG
TCGATGATTGAAGGAAGAGGCCCAGAAGCATGGCCAGGAGGGGAAAATAGAATTTTTGAA
GACCGAAAACCAAAACAGGAAAAAAAAAAATGAAACTCTTCTGTAAGACTCTTCTGGTTT
CTTTTATTTAGAGACGGGCTGTGTGCTTTCTGTTTCTTGGTCTCCCACACGTCTTAGTGT
CGCCGGCCCAGGACTGCAGGACAGATTGGCCCGTGGCCCTCCCCTTGCTGGACGTGCTCG
TGTCCCGCTAGCGACAGCGTGACGGGCACCCCGCTCAGCGCGCCGTCTGCATGCTTATAA
CCTCAGAGCCCGGCTCAGCGGAGTCTGGGCCACTGCAGGCGCCCATCAGCCGCCGGGCTG
AGCTCTGGTGCTGAGCCGAGGTCCCAGGGGCACCTTGGCCTTCAGGGAGGGCGGACACAG
GAACAGGCAGTGGGGAGGTGCTTCTTGACTTTGGTGATGTTCGTTCTTTGTGCCGCTCAA
GCTCACCAGAGGGCATTTGAGTTCCAATATACGGGTCCTTCCCCTTCTCCGCCGTCTGTG
ACTCTTGGTTCTTTCCGGCTCAGTGCTGCCAACACCTCGGGGACAGCCCGGGAGTGGGTG
CCGTTGTCTTAATCAGGCTGTCTCCTCGTCCAGTCCCTTCTGTCCTGGAATCAGCCCTGC
TTTGCCTAAACGCCTGTGACTTTGGAACCTTAGTAATTGCTACCACTTTTTTCATGGTGG
TGACAATGAGAGCTGTTTAATGTAGCAAGTTCTGAAAATGTGACAGAAATCACCCATGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTTACATTTTAGTGCCTGTGTTTTTTAAATACCTTACTTAAAAGACATCTTTCTAATC
CCCATCGTTATATTGCTCATGTTTTACTTTCCCTGAATTTTGAGAGTGGTCCCTTTTTGT
ATCCTTTCTCACAATCCACACACTTTTAATTTCCTCTGTGCTTCTCTTCTTGGTCGCAGT
GAAATTATTGCCAGTGGACTGTGAGAGAAAAACAGATGAGGTGAGTTTGTGTTTCTCTAT
CTTTCATTATTCCTCCCAAAGATGTTGGCTTCCATCATGAGGTAAACTGGCCCATAAAGA
TATCATAATGGGATCATTTTCATGATATCTGCCTGTAATGTACCAGAATGGCATCGTGTT
CTGTGATGTTTGTGTCATACTCAATTGTGGCAGTGAATGAGCACTTGAAACGGAGAGGAT
TGAGCTCCTGAGCTCCATCCCCGGGCTTGTTACCGGAGCTCTCCCATCAATCACGGTACT
AAAGACTTTGATCTGCCTGAGCCGATGGGGAACTGAGTTGGATGCTGTAAGTTGTGGTTG
AATAACCTCTCAAGCCCCCTGGCTTCCATATAAAGGCTCGCATCTTTTTAATGTCATGAG
ACCGGGGTCTCAATTGCGCAATCTCCGGTCGATGTCTGTGGCTCTGAAAATACTGTTCTG
ATTTGAAACGTCATCCGGGGCTTGTTTTAAACACATCTGAAGTGGAGTTAGCCCTCTTAG
TCTATAGATTTGTTTTATGAAGCTTTAATGTTCCCTACAAATAATATTTGGGAAGGTGAG
CAGTCCCATCCATTTATGAGTCATGAAAACAGCATTAGCGAGAAGATGGGATGCTGGGAC
AGGTGGCAGTGTGGGGAAGATACGAGGCAGTAAATTTTCAGGTCGTAAATCCTACCAGGA
GGAGTCTTGTGCTGCCAGAGGGCGTGACTTAGTGGTATAAGTGTGCAGGTCACCAGGGGC
TGGAGAGAAGCCACTTGAGGTTATTCCCAGGCCCATGCATGGACTCTTACCCACGTAACC
AGGGGCCGTCCTGATGCAGACAGCCAGTTTTATTTCTCTTTGGCTTCTGCTGTGTCATAT
TTGGGGGTGTTTTTATTACATGTATTTATTGCGTGCATCCACCAGATATCTTGGCTTCCC
TACTGTTTTGTAAAAACAGGTTCAGGGTAAGTATTAGCTGCCTTCTCAAAAAAACTGCAG
TCGATGATTGAAGGAAGAGGCCCAGAAGCATGGCCAGGAGGGGAAAATAGAATTTTTGAA
GACCGAAAACCAAAACAGGAAAAAAAAAAATGAAACTCTTCTGTAAGACTCTTCTGGTTT
CTTTTATTTAGAGACGGGCTGTGTGCTTTCTGTTTCTTGGTCTCCCACACGTCTTAGTGT
CGCCGGCCCAGGACTGCAGGACAGATTGGCCCGTGGCCCTCCCCTTGCTGGACGTGCTCG
TGTCCCGCTAGCGACAGCGTGACGGGCACCCCGCTCAGCGCGCCGTCTGCATGCTTATAA
CCTCAGAGCCCGGCTCAGCGGAGTCTGGGCCACTGCAGGCGCCCATCAGCCGCCGGGCTG
AGCTCTGGTGCTGAGCCGAGGTCCCAGGGGCACCTTGGCCTTCAGGGAGGGCGGACACAG
GAACAGGCAGTGGGGAGGTGCTTCTTGACTTTGGTGATGTTCGTTCTTTGTGCCGCTCAA
GCTCACCAGAGGGCATTTGAGTTCCAATATACGGGTCCTTCCCCTTCTCCGCCGTCTGTG
ACTCTTGGTTCTTTCCGGCTCAGTGCTGCCAACACCTCGGGGACAGCCCGGGAGTGGGTG
CCGTTGTCTTAATCAGGCTGTCTCCTCGTCCAGTCCCTTCTGTCCTGGAATCAGCCCTGC
TTTGCCTAAACGCCTGTGACTTTGGAACCTTAGTAATTGCTACCACTTTTTTCATGGTGG
TGACAATGAGAGCTGTTTAATGTAGCAAGTTCTGAAAATGTGACAGAAATCACCCATGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               124-316, + strand, RNAz p=0.866417

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               124-316, + strand, RNAz p=0.866417

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               4-940, gnl|bosTau2|chr23 (6300721-6299792)
               

               
               4-940, gnl|Hg17|chr6 (33862700-33861801)
               

               
               4-940, gnl|Mm7|chr17 (25387458-25386584)
               


               
               1007-1978, gnl|bosTau2|chr23 (6299679-6298686)
               

               
               1007-1978, gnl|Hg17|chr6 (33861698-33860753)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-940, gnl|bosTau2|chr23 (6300721-6299792)
               

               
               4-940, gnl|Hg17|chr6 (33862700-33861801)
               

               
               4-940, gnl|Mm7|chr17 (25387458-25386584)
               


               
               1007-1978, gnl|bosTau2|chr23 (6299679-6298686)
               

               
               1007-1978, gnl|Hg17|chr6 (33861698-33860753)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nje (0.16592)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               ese (0.126502)

	4-940, gnl\|bosTau2\|chr23 (6300721-6299792)
	4-940, gnl\|Hg17\|chr6 (33862700-33861801)
	4-940, gnl\|Mm7\|chr17 (25387458-25386584)

	1007-1978, gnl\|bosTau2\|chr23 (6299679-6298686)
	1007-1978, gnl\|Hg17\|chr6 (33861698-33860753)