Non-Coding RNA Search

Ss1.1-Tra1-TCH01C070012.5

Sequence:


               
               AACTCCATTCAGAGACTGGCGTGACTGGGCTGGGTTTCCCCCCCCCCCTCAGCTCTTGTA
TCACTGAAGAATCTGGCAGCCAGTTCCGTCCTGACAGAGTTTACAGCATATATTGGTGGA
TTCTTGTCCATAGTGCATCTGCTTTAAGAATTAACGAAAGCAGTGTCAAGACAGTAAGGA
TTCACAGCATTTACCAAAAATGCATCTAGGCGTGTTTACTCTCCTCTTGGCGACAATCGG
CAGCGCCAGTGGCCACTACTATGATGACGACGATTATTACTTCCCCCTCTCGATTTATGG
GCGATCATCGCCCAACTGTGCCCCGGAATGCAATTGCCCTGAGAGCTACCCAACGGCCAT
GTACTGCGATGAGCTGAAATTGAAAAGCGTGCCAATGGTGCCTCCTGGAATCAAGTACCT
TTACCTGAGAAACAACCAGATCGACCATATCGACGACAAGGCCTTTGAAAATGTGACTGA
TCTAGAGTGGCTCATTCTAGATCATAACCTTCTAGAAAACTCCAAAATAAAAGGAAGAGT
TTTCTCTAAACTGAAGCAACTGAAGAAGCTGCATATAAATTACAACAATCTGACCGAGTC
TGTAGGCCCACTCCCCAAATCCCTGGTGGACCTGCAGCTCACTAATAACAAAATCTCGAA
GCTCGGCTCCTTTGATGGACTGGTCAACCTGACTTTTATCCACCTGCAACACAATCAGCT
GAAAGAGGATGCCGTTTCAGCGGCTTTTAGAGGTCTTAAGGGGCTCGAATACCTTGACTT
GAGCTTCAATCAGATGACCAAACTGCCTTCTGGCCTCCCAGTATCTCTTCTAACTCTCTA
CTTAGACAACAATAAGATCAGCAACATCCCAGATGAGTATTTCAAGCATTTCAGTGGCCT
GCAGTACCTGCGTTTGTCTCATAATGAACTGGCTGATAGTGGAATACCTGGAAATTCTTT
TAATTTATCATCTCTGCTGGAGCTGGATCTCTCCTACAATAAGCTTAAAAACATACCGAC
TGTCAATGAAAACCTTGAAAACTATTACCTGGAGGTCAATGAACTTGAAAAGTTTGAAGT
AAAGAGCTTCTGTAAGATCCTGGGACCATTATCCTACTCCAAGATCAAACATTTGCGTTT
GGATGGCAATCGCATCACCCAAACTAGTCTACCACCTGACATGTATGAGTGTCTACGCGT
AGCAAATGAAATCACCGTTAATTAATATCTACTAATTCCAACTATACTGAGGTATATCCT
AGGTCAGCATTTTATGGTTATGGTTATTTGTGAGTCCGTTTTTATAGTATTCATTTTTGT
TGTTGATTATTACTTCCATGAATTTTGAATTCTGAGGGAAAAATGTTTTGTAAACATTTT
ACTACATGTTTAAAAGAAAAGATGAAAGGCAGGCCTATTTCATCACAAGCACAAATACAC
AGACACACACACACACACACACAACAAACAATGCTTTATTTGTAAATTTATTGCTTTCTA
CATCTCTACTATCAAATGATGTACCTGGTTTCATGGAAGTCAGTCGAGGTTTATTAATCC
TAAACCTTAACTTAATGTGCCAAAAAGCAGGGATTACATCATCTGGATGTTTACAGTCTC
AAGGCAAATTATCTCAACTGTTCCAATTGCAATGTTCAAATTTGTTTAGCTGAAAAATAG
ACGGTAAATTTTGAGACCAATCATTTTACAAAATACTAGACCAAATTCATGAAACCACAT
ACACTTAAAGTAGTATTTTTAGTGTTAGGAATTCTATACTTACCTAGGGAAACTTTTCTA
CAGGTATTTTTCACTCTAAGTCATATGTATGTTTCTTTTTGATTATTTGCATGTTATGTT
TAACAAGCTAATAGCAAAATAAAACATAGCAAATGGCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTCCATTCAGAGACTGGCGTGACTGGGCTGGGTTTCCCCCCCCCCCTCAGCTCTTGTA
TCACTGAAGAATCTGGCAGCCAGTTCCGTCCTGACAGAGTTTACAGCATATATTGGTGGA
TTCTTGTCCATAGTGCATCTGCTTTAAGAATTAACGAAAGCAGTGTCAAGACAGTAAGGA
TTCACAGCATTTACCAAAAATGCATCTAGGCGTGTTTACTCTCCTCTTGGCGACAATCGG
CAGCGCCAGTGGCCACTACTATGATGACGACGATTATTACTTCCCCCTCTCGATTTATGG
GCGATCATCGCCCAACTGTGCCCCGGAATGCAATTGCCCTGAGAGCTACCCAACGGCCAT
GTACTGCGATGAGCTGAAATTGAAAAGCGTGCCAATGGTGCCTCCTGGAATCAAGTACCT
TTACCTGAGAAACAACCAGATCGACCATATCGACGACAAGGCCTTTGAAAATGTGACTGA
TCTAGAGTGGCTCATTCTAGATCATAACCTTCTAGAAAACTCCAAAATAAAAGGAAGAGT
TTTCTCTAAACTGAAGCAACTGAAGAAGCTGCATATAAATTACAACAATCTGACCGAGTC
TGTAGGCCCACTCCCCAAATCCCTGGTGGACCTGCAGCTCACTAATAACAAAATCTCGAA
GCTCGGCTCCTTTGATGGACTGGTCAACCTGACTTTTATCCACCTGCAACACAATCAGCT
GAAAGAGGATGCCGTTTCAGCGGCTTTTAGAGGTCTTAAGGGGCTCGAATACCTTGACTT
GAGCTTCAATCAGATGACCAAACTGCCTTCTGGCCTCCCAGTATCTCTTCTAACTCTCTA
CTTAGACAACAATAAGATCAGCAACATCCCAGATGAGTATTTCAAGCATTTCAGTGGCCT
GCAGTACCTGCGTTTGTCTCATAATGAACTGGCTGATAGTGGAATACCTGGAAATTCTTT
TAATTTATCATCTCTGCTGGAGCTGGATCTCTCCTACAATAAGCTTAAAAACATACCGAC
TGTCAATGAAAACCTTGAAAACTATTACCTGGAGGTCAATGAACTTGAAAAGTTTGAAGT
AAAGAGCTTCTGTAAGATCCTGGGACCATTATCCTACTCCAAGATCAAACATTTGCGTTT
GGATGGCAATCGCATCACCCAAACTAGTCTACCACCTGACATGTATGAGTGTCTACGCGT
AGCAAATGAAATCACCGTTAATTAATATCTACTAATTCCAACTATACTGAGGTATATCCT
AGGTCAGCATTTTATGGTTATGGTTATTTGTGAGTCCGTTTTTATAGTATTCATTTTTGT
TGTTGATTATTACTTCCATGAATTTTGAATTCTGAGGGAAAAATGTTTTGTAAACATTTT
ACTACATGTTTAAAAGAAAAGATGAAAGGCAGGCCTATTTCATCACAAGCACAAATACAC
AGACACACACACACACACACACAACAAACAATGCTTTATTTGTAAATTTATTGCTTTCTA
CATCTCTACTATCAAATGATGTACCTGGTTTCATGGAAGTCAGTCGAGGTTTATTAATCC
TAAACCTTAACTTAATGTGCCAAAAAGCAGGGATTACATCATCTGGATGTTTACAGTCTC
AAGGCAAATTATCTCAACTGTTCCAATTGCAATGTTCAAATTTGTTTAGCTGAAAAATAG
ACGGTAAATTTTGAGACCAATCATTTTACAAAATACTAGACCAAATTCATGAAACCACAT
ACACTTAAAGTAGTATTTTTAGTGTTAGGAATTCTATACTTACCTAGGGAAACTTTTCTA
CAGGTATTTTTCACTCTAAGTCATATGTATGTTTCTTTTTGATTATTTGCATGTTATGTT
TAACAAGCTAATAGCAAAATAAAACATAGCAAATGGCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|539745|pir||A46743

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|539745|pir||A46743

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               394-593, - strand, RNAz p=0.995628

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               394-593, - strand, RNAz p=0.995628

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               177-1083, gnl|bosTau2|chr5 (13843350-13844257)
               

               
               177-1083, gnl|Hg17|chr12 (90005247-90004351)
               

               
               177-1083, gnl|Mm7|chr10 (97130709-97131605)
               


               
               315-1060, gnl|bosTau2|chr16 (2503774-2503029)
               

               
               315-1060, gnl|Hg17|chr1 (200048832-200048087)
               

               
               315-1060, gnl|Mm7|chr1 (133930232-133930977)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               177-1083, gnl|bosTau2|chr5 (13843350-13844257)
               

               
               177-1083, gnl|Hg17|chr12 (90005247-90004351)
               

               
               177-1083, gnl|Mm7|chr10 (97130709-97131605)
               


               
               315-1060, gnl|bosTau2|chr16 (2503774-2503029)
               

               
               315-1060, gnl|Hg17|chr1 (200048832-200048087)
               

               
               315-1060, gnl|Mm7|chr1 (133930232-133930977)

Expressed library(ies): 50 entry(ies)

More info

Expressed library(ies): 50 entry(ies)

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               fat (2.94855)
               

               
               ski (2.78797)
               

               
               eep (2.20615)
               

               
               eye (1.36402)
               

               
               bfe (1.34872)
               

               
               aor (1.17165)
               

               
               tra (1.10783)
               

               
               bla (0.994777)
               

               
               tbr (0.925069)
               

               
               jca (0.911681)
               

               
               gul (0.887942)
               

               
               lin (0.873617)
               

               
               rec (0.865351)
               

               
               ute (0.796707)
               

               
               nep (0.7357)
               

               
               mgp (0.692042)
               

               
               ret (0.643666)
               

               
               mga (0.64082)
               

               
               isp (0.601504)
               

               
               eru (0.60024)
               

               
               sin (0.524843)
               

               
               csk (0.422238)
               

               
               ste (0.405625)
               

               
               mgm (0.360685)
               

               
               med (0.348756)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               eje (0.296501)
               

               
               cga (0.279096)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 50 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (2.94855)
               

               
               ski (2.78797)
               

               
               eep (2.20615)
               

               
               eye (1.36402)
               

               
               bfe (1.34872)
               

               
               aor (1.17165)
               

               
               tra (1.10783)
               

               
               bla (0.994777)
               

               
               tbr (0.925069)
               

               
               jca (0.911681)
               

               
               gul (0.887942)
               

               
               lin (0.873617)
               

               
               rec (0.865351)
               

               
               ute (0.796707)
               

               
               nep (0.7357)
               

               
               mgp (0.692042)
               

               
               ret (0.643666)
               

               
               mga (0.64082)
               

               
               isp (0.601504)
               

               
               eru (0.60024)
               

               
               sin (0.524843)
               

               
               csk (0.422238)
               

               
               ste (0.405625)
               

               
               mgm (0.360685)
               

               
               med (0.348756)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               eje (0.296501)
               

               
               cga (0.279096)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	177-1083, gnl\|bosTau2\|chr5 (13843350-13844257)
	177-1083, gnl\|Hg17\|chr12 (90005247-90004351)
	177-1083, gnl\|Mm7\|chr10 (97130709-97131605)

	315-1060, gnl\|bosTau2\|chr16 (2503774-2503029)
	315-1060, gnl\|Hg17\|chr1 (200048832-200048087)
	315-1060, gnl\|Mm7\|chr1 (133930232-133930977)

	fat (2.94855)
	ski (2.78797)
	eep (2.20615)
	eye (1.36402)
	bfe (1.34872)
	aor (1.17165)
	tra (1.10783)
	bla (0.994777)
	tbr (0.925069)
	jca (0.911681)
	gul (0.887942)
	lin (0.873617)
	rec (0.865351)
	ute (0.796707)
	nep (0.7357)
	mgp (0.692042)
	ret (0.643666)
	mga (0.64082)
	isp (0.601504)
	eru (0.60024)
	sin (0.524843)
	csk (0.422238)
	ste (0.405625)
	mgm (0.360685)
	med (0.348756)
	vin (0.332557)
	sme (0.305437)
	eje (0.296501)
	cga (0.279096)
	lyg (0.266205)
	ova (0.258264)
	ese (0.253004)
	cty (0.20816)
	hea (0.204499)
	col (0.195008)
	nlu (0.191681)
	mcp (0.170648)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	nca (0.136874)
	che (0.136314)
	nmm (0.132802)
	kid (0.129735)
	sug (0.127291)
	ebs (0.118301)
	spc (0.113366)
	nbm (0.0993246)
	jej (0.0989218)
	ldo (0.0970026)