Ss1.1-Tra1-TCH01C070014.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTTGATGGCGTCGGGCTGGCGAGCCAAGGGTCTGGTGGTGGCCCCCGGGCGACTGCCG CCTGTGTGAGGGGCCGGCGGCCCGAGCGTGCTGGGGCCTCGGGGAGTGGAAGCGGAAGCA CTAGCCCTCCTTACACTTCGCCATGAGTTTCCTAATTGACTCCAGCATCATGATTACCTC CCAGATACTTTTCTTTGGATTTGGGTGGCTTTTTTTCATGAGACAACTGTTTAAGGACTA TGAGGTGCGTCAGTATGTGGTACAGGTGATCTTCTCTGTGACTTTTGCATTTTCTTGCAC CATGTTTGAGCTCATCATCTTCGAAATCTTAGGAGTATTAAATAGCAGCTCCCGTTATTT TCACTGGAAAATGAACCTGTGTGTAATTCTGTTGATCCTGGTTTTCATGGTGCCTTTTTA TATTGGCTACTTTATCGTGAGCAACATCCGACTATTGCATAAACAGCGACTACTTTTTTC CTGTCTCTTATGGTTGACCTTCATGTATTTCTTTTGGAAACTAGGAGATCCATTTCCCAT TCTCAGCCCAAAACATGGGATCTTGTCCATAGAACAGCTCATCAGCCGAGTAGGTGTGAT TGGGGTGACTCTCATGGCTCTTCTTTCTGGATTTGGTGCTGTCAACTGCCCATACACTTA CATGTCCTACTTCCTCAGGAATGTGACTGACACAGATATTCTAGCCCTGGAACGGCGACT GCTGCAAACCATGGATATGATCATAAGCAAAAAGAAAAGGATGGCAATGACACGGAGAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTTGATGGCGTCGGGCTGGCGAGCCAAGGGTCTGGTGGTGGCCCCCGGGCGACTGCCG CCTGTGTGAGGGGCCGGCGGCCCGAGCGTGCTGGGGCCTCGGGGAGTGGAAGCGGAAGCA CTAGCCCTCCTTACACTTCGCCATGAGTTTCCTAATTGACTCCAGCATCATGATTACCTC CCAGATACTTTTCTTTGGATTTGGGTGGCTTTTTTTCATGAGACAACTGTTTAAGGACTA TGAGGTGCGTCAGTATGTGGTACAGGTGATCTTCTCTGTGACTTTTGCATTTTCTTGCAC CATGTTTGAGCTCATCATCTTCGAAATCTTAGGAGTATTAAATAGCAGCTCCCGTTATTT TCACTGGAAAATGAACCTGTGTGTAATTCTGTTGATCCTGGTTTTCATGGTGCCTTTTTA TATTGGCTACTTTATCGTGAGCAACATCCGACTATTGCATAAACAGCGACTACTTTTTTC CTGTCTCTTATGGTTGACCTTCATGTATTTCTTTTGGAAACTAGGAGATCCATTTCCCAT TCTCAGCCCAAAACATGGGATCTTGTCCATAGAACAGCTCATCAGCCGAGTAGGTGTGAT TGGGGTGACTCTCATGGCTCTTCTTTCTGGATTTGGTGCTGTCAACTGCCCATACACTTA CATGTCCTACTTCCTCAGGAATGTGACTGACACAGATATTCTAGCCCTGGAACGGCGACT GCTGCAAACCATGGATATGATCATAAGCAAAAAGAAAAGGATGGCAATGACACGGAGAAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 42-184, gnl|bosTau2|chr3 (15759306-15759167) | |
| 42-184, gnl|Hg17|chr1 (144625352-144625507) | |
| 42-184, gnl|Mm7|chr3 (96777299-96777165) | |
| 243-348, gnl|bosTau2|chr3 (15750622-15750517) | |
| 243-348, gnl|canFam2|chr17 (61525629-61525763) | |
| 243-348, gnl|canFam2|chr17 (61525754-61525656) | |
| 243-348, gnl|danRer3|chr15 (18526361-18526488) | |
| 243-348, gnl|danRer3|chr15 (18526478-18526381) | |
| 243-348, gnl|dasNov1|scaffold_161273 (513-417) | |
| 243-348, gnl|dasNov1|scaffold_32202 (1648-1515) | |
| 243-348, gnl|echTel1|scaffold_306124 (5659-5793) | |
| 243-348, gnl|echTel1|scaffold_306124 (5784-5687) | |
| 243-348, gnl|fr1|chrUn (207775312-207775178) | |
| 243-348, gnl|fr1|chrUn (207775188-207775285) | |
| 243-348, gnl|galGal2|chr1 (86393761-86393893) | |
| 243-348, gnl|galGal2|chr1 (86397002-86396936) | |
| 243-348, gnl|hg17|chr1 (144635620-144635754) | |
| 243-348, gnl|Hg17|chr1 (144635642-144635747) | |
| 243-348, gnl|hg17|chr6 (27813907-27814005) | |
| 243-348, gnl|mm7|chr3 (96769442-96769311) | |
| 243-348, gnl|mm7|chr3 (96769320-96769417) | |
| 243-348, gnl|Mm7|chr3 (96769421-96769316) | |
| 243-348, gnl|monDom2|scaffold_44 (2104480-2104615) | |
| 243-348, gnl|oryCun1|scaffold_205165 (64347-64481) | |
| 243-348, gnl|oryCun1|scaffold_97687 (2074-1976) | |
| 243-348, gnl|panTro1|chr1 (127161638-127161770) | |
| 243-348, gnl|panTro1|chr5 (28304058-28304156) | |
| 243-348, gnl|rheMac2|chr1 (127362524-127362657) | |
| 243-348, gnl|rheMac2|chr4 (27508160-27508258) | |
| 243-348, gnl|xenTro1|scaffold_351 (1005784-1005913) | |
| 243-348, gnl|xenTro1|scaffold_351 (1005904-1005806) | |
| 453-558, gnl|bosTau2|chr3 (15741634-15741529) | |
| 453-558, gnl|canFam2|chr17 (61531088-61530968) | |
| 453-558, gnl|canFam2|chr17 (61531073-61530952) | |
| 453-558, gnl|danRer3|chr15 (18526875-18526766) | |
| 453-558, gnl|danRer3|chr15 (18526871-18526746) | |
| 453-558, gnl|dasNov1|scaffold_161273 (726-624) | |
| 453-558, gnl|dasNov1|scaffold_161273 (725-624) | |
| 453-558, gnl|echTel1|scaffold_306124 (7927-7812) | |
| 453-558, gnl|echTel1|scaffold_306124 (7917-7795) | |
| 453-558, gnl|fr1|chrUn (207774760-207774877) | |
| 453-558, gnl|fr1|chrUn (207774651-207774895) | |
| 453-558, gnl|galGal2|chr1 (86398070-86397960) | |
| 453-558, gnl|galGal2|chr1 (86398065-86397949) | |
| 453-558, gnl|hg17|chr1 (143300374-143300491) | |
| 453-558, gnl|Hg17|chr1 (143300490-143300385) | |
| 453-558, gnl|hg17|chr6 (27813674-27813796) | |
| 453-558, gnl|loxAfr1|scaffold_45168 (47987-47872) | |
| 453-558, gnl|loxAfr1|scaffold_45168 (47977-47855) | |
| 453-558, gnl|mm7|chr3 (96764839-96764954) | |
| 453-558, gnl|mm7|chr3 (96764849-96764970) | |
| 453-558, gnl|Mm7|chr3 (96764953-96764848) | |
| 453-558, gnl|monDom2|scaffold_44 (2106047-2105936) | |
| 453-558, gnl|oryCun1|scaffold_205165 (68556-68439) | |
| 453-558, gnl|oryCun1|scaffold_97687 (2286-2185) | |
| 453-558, gnl|panTro1|chr1_random (17321780-17321663) | |
| 453-558, gnl|panTro1|chr5 (28303825-28303947) | |
| 453-558, gnl|rheMac2|chr1 (125831144-125831027) | |
| 453-558, gnl|rheMac2|chr4 (27507927-27508049) | |
| 453-558, gnl|rn3|chr2 (191662327-191662442) | |
| 453-558, gnl|rn3|chr2 (191662337-191662457) | |
| 453-558, gnl|tetNig1|chr2 (9714710-9714827) | |
| 453-558, gnl|tetNig1|chr2 (9714722-9714838) | |
| 453-558, gnl|xenTro1|scaffold_351 (1008318-1008199) | |
| 453-558, gnl|xenTro1|scaffold_351 (1008304-1008188) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 42-184, gnl|bosTau2|chr3 (15759306-15759167) | |
| 42-184, gnl|Hg17|chr1 (144625352-144625507) | |
| 42-184, gnl|Mm7|chr3 (96777299-96777165) | |
| 243-348, gnl|bosTau2|chr3 (15750622-15750517) | |
| 243-348, gnl|canFam2|chr17 (61525629-61525763) | |
| 243-348, gnl|canFam2|chr17 (61525754-61525656) | |
| 243-348, gnl|danRer3|chr15 (18526361-18526488) | |
| 243-348, gnl|danRer3|chr15 (18526478-18526381) | |
| 243-348, gnl|dasNov1|scaffold_161273 (513-417) | |
| 243-348, gnl|dasNov1|scaffold_32202 (1648-1515) | |
| 243-348, gnl|echTel1|scaffold_306124 (5659-5793) | |
| 243-348, gnl|echTel1|scaffold_306124 (5784-5687) | |
| 243-348, gnl|fr1|chrUn (207775312-207775178) | |
| 243-348, gnl|fr1|chrUn (207775188-207775285) | |
| 243-348, gnl|galGal2|chr1 (86393761-86393893) | |
| 243-348, gnl|galGal2|chr1 (86397002-86396936) | |
| 243-348, gnl|hg17|chr1 (144635620-144635754) | |
| 243-348, gnl|Hg17|chr1 (144635642-144635747) | |
| 243-348, gnl|hg17|chr6 (27813907-27814005) | |
| 243-348, gnl|mm7|chr3 (96769442-96769311) | |
| 243-348, gnl|mm7|chr3 (96769320-96769417) | |
| 243-348, gnl|Mm7|chr3 (96769421-96769316) | |
| 243-348, gnl|monDom2|scaffold_44 (2104480-2104615) | |
| 243-348, gnl|oryCun1|scaffold_205165 (64347-64481) | |
| 243-348, gnl|oryCun1|scaffold_97687 (2074-1976) | |
| 243-348, gnl|panTro1|chr1 (127161638-127161770) | |
| 243-348, gnl|panTro1|chr5 (28304058-28304156) | |
| 243-348, gnl|rheMac2|chr1 (127362524-127362657) | |
| 243-348, gnl|rheMac2|chr4 (27508160-27508258) | |
| 243-348, gnl|xenTro1|scaffold_351 (1005784-1005913) | |
| 243-348, gnl|xenTro1|scaffold_351 (1005904-1005806) | |
| 453-558, gnl|bosTau2|chr3 (15741634-15741529) | |
| 453-558, gnl|canFam2|chr17 (61531088-61530968) | |
| 453-558, gnl|canFam2|chr17 (61531073-61530952) | |
| 453-558, gnl|danRer3|chr15 (18526875-18526766) | |
| 453-558, gnl|danRer3|chr15 (18526871-18526746) | |
| 453-558, gnl|dasNov1|scaffold_161273 (726-624) | |
| 453-558, gnl|dasNov1|scaffold_161273 (725-624) | |
| 453-558, gnl|echTel1|scaffold_306124 (7927-7812) | |
| 453-558, gnl|echTel1|scaffold_306124 (7917-7795) | |
| 453-558, gnl|fr1|chrUn (207774760-207774877) | |
| 453-558, gnl|fr1|chrUn (207774651-207774895) | |
| 453-558, gnl|galGal2|chr1 (86398070-86397960) | |
| 453-558, gnl|galGal2|chr1 (86398065-86397949) | |
| 453-558, gnl|hg17|chr1 (143300374-143300491) | |
| 453-558, gnl|Hg17|chr1 (143300490-143300385) | |
| 453-558, gnl|hg17|chr6 (27813674-27813796) | |
| 453-558, gnl|loxAfr1|scaffold_45168 (47987-47872) | |
| 453-558, gnl|loxAfr1|scaffold_45168 (47977-47855) | |
| 453-558, gnl|mm7|chr3 (96764839-96764954) | |
| 453-558, gnl|mm7|chr3 (96764849-96764970) | |
| 453-558, gnl|Mm7|chr3 (96764953-96764848) | |
| 453-558, gnl|monDom2|scaffold_44 (2106047-2105936) | |
| 453-558, gnl|oryCun1|scaffold_205165 (68556-68439) | |
| 453-558, gnl|oryCun1|scaffold_97687 (2286-2185) | |
| 453-558, gnl|panTro1|chr1_random (17321780-17321663) | |
| 453-558, gnl|panTro1|chr5 (28303825-28303947) | |
| 453-558, gnl|rheMac2|chr1 (125831144-125831027) | |
| 453-558, gnl|rheMac2|chr4 (27507927-27508049) | |
| 453-558, gnl|rn3|chr2 (191662327-191662442) | |
| 453-558, gnl|rn3|chr2 (191662337-191662457) | |
| 453-558, gnl|tetNig1|chr2 (9714710-9714827) | |
| 453-558, gnl|tetNig1|chr2 (9714722-9714838) | |
| 453-558, gnl|xenTro1|scaffold_351 (1008318-1008199) | |
| 453-558, gnl|xenTro1|scaffold_351 (1008304-1008188) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| hea (0.204499) | |
| col (0.195008) | |
| csp (0.161186) | |
| cst (0.140036) | |
| nmm (0.132802) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.204499) | |
| col (0.195008) | |
| csp (0.161186) | |
| cst (0.140036) | |
| nmm (0.132802) |