Non-Coding RNA Search

Ss1.1-Tra1-TCH01C070027.5

Sequence:


               
               TTTTAATGTCCTGAAAAAGTCACGTAAAAGATAAACACGGGAACGGAATTTCTTTTTCTC
CAGGTGCCCTGGAAAAAGGTTACAGTGAGCCTCAGATTGTATTAGTTGTGTCAGTGACCA
CGGCATCACACTAAGCAGTGCAATTCCTAAAGAACATATACAGTAAGATGTGGCTGCTAA
AGACAGTTCTGTGAGCACATCAAAATATATGTTACACAGTCATTTTATTAACCGAGGGGT
GTTTTCGTATCTGGTGGATGATGATCATTTTTACAAAAAGCAGAATTCAGTAAAATTAGT
ATTTCTATTCTAGCAGGAGGGGGAAAAGCCAGATTGCATGTAAACCTATAAATGTCTGTC
TCATTAAAAGTGACCTTTTTTGTTTCTAAATAGTGGGGACCCAGGATGAGAGTGATTGAT
GGGTTTTAAGAAACAAAAAGTTAACAACAGCCATCACTGTAGGACGTATATCATAGTGGG
TGCTTTTGCTTCTTTTGCAGTGTTTGGAAAACACTATTGTGTGTTTGTCTGTTGCCTAAA
GAGCATTTCTGAGACGCAGTAAAGGCAGAAGTGATAAATTATGGAAGAGTTCCAACAGAA
GCCAATAAGCCCAGTTTAAAAACACAGTCAATCAATTTAGCTTTTCTTAAAGAAAAGTGC
ATATCCAACCTGAAATTACTTACTTCTTTTCCCCCAACTATTTGATCTTTGAAAGCCCTA
ATGTCCTGCTAATGAAGTGTTAGTTCTGGAGGTATGCAAATGAGCGATCTGTTGGCCAGC
CAGGAGGGGTGACAGGTGAACCATGTCTATATAGCAGTGCCCCGCAGAGAGGAATATGTT
GAGGCTGTAGTGTTTCTTGGTGAAAAGAAGCTTATGTTATCTTCTCCCCCTGGGGACTGA
GATTGAATCAAGTCAGTGAGATAAGCCATCATTTAGGCTGGTATAATTTATATAGCATAG
TTATTCAAAGTTGGGACCACTTTAACTAGATCTCAGAGGCCTCTGGTTCTGTGGGTATCA
CACACTGCCTCGTGGGTGGTGGCAGTGGGGACTGTGCCCATCATGTGCTCTTTTGTCTCA
TTGGCTCCGTTCTATCATTGTACAAGTACCATATACACACTGTGAGTACGTATGTATGGG
GGATGGGGGCACTATACTGGATATTATGATATTAGAATATTACCCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAATGTCCTGAAAAAGTCACGTAAAAGATAAACACGGGAACGGAATTTCTTTTTCTC
CAGGTGCCCTGGAAAAAGGTTACAGTGAGCCTCAGATTGTATTAGTTGTGTCAGTGACCA
CGGCATCACACTAAGCAGTGCAATTCCTAAAGAACATATACAGTAAGATGTGGCTGCTAA
AGACAGTTCTGTGAGCACATCAAAATATATGTTACACAGTCATTTTATTAACCGAGGGGT
GTTTTCGTATCTGGTGGATGATGATCATTTTTACAAAAAGCAGAATTCAGTAAAATTAGT
ATTTCTATTCTAGCAGGAGGGGGAAAAGCCAGATTGCATGTAAACCTATAAATGTCTGTC
TCATTAAAAGTGACCTTTTTTGTTTCTAAATAGTGGGGACCCAGGATGAGAGTGATTGAT
GGGTTTTAAGAAACAAAAAGTTAACAACAGCCATCACTGTAGGACGTATATCATAGTGGG
TGCTTTTGCTTCTTTTGCAGTGTTTGGAAAACACTATTGTGTGTTTGTCTGTTGCCTAAA
GAGCATTTCTGAGACGCAGTAAAGGCAGAAGTGATAAATTATGGAAGAGTTCCAACAGAA
GCCAATAAGCCCAGTTTAAAAACACAGTCAATCAATTTAGCTTTTCTTAAAGAAAAGTGC
ATATCCAACCTGAAATTACTTACTTCTTTTCCCCCAACTATTTGATCTTTGAAAGCCCTA
ATGTCCTGCTAATGAAGTGTTAGTTCTGGAGGTATGCAAATGAGCGATCTGTTGGCCAGC
CAGGAGGGGTGACAGGTGAACCATGTCTATATAGCAGTGCCCCGCAGAGAGGAATATGTT
GAGGCTGTAGTGTTTCTTGGTGAAAAGAAGCTTATGTTATCTTCTCCCCCTGGGGACTGA
GATTGAATCAAGTCAGTGAGATAAGCCATCATTTAGGCTGGTATAATTTATATAGCATAG
TTATTCAAAGTTGGGACCACTTTAACTAGATCTCAGAGGCCTCTGGTTCTGTGGGTATCA
CACACTGCCTCGTGGGTGGTGGCAGTGGGGACTGTGCCCATCATGTGCTCTTTTGTCTCA
TTGGCTCCGTTCTATCATTGTACAAGTACCATATACACACTGTGAGTACGTATGTATGGG
GGATGGGGGCACTATACTGGATATTATGATATTAGAATATTACCCTCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               766-870, + strand, RNAz p=0.689399

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               766-870, + strand, RNAz p=0.689399

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               48-747, gnl|bosTau2|chr19 (4712153-4712845)
               

               
               48-747, gnl|Hg17|chr17 (54791484-54792744)
               


               
               766-1016, gnl|bosTau2|chr19 (4712900-4713164)
               

               
               766-1016, gnl|Hg17|chr17 (54792766-54793353)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-747, gnl|bosTau2|chr19 (4712153-4712845)
               

               
               48-747, gnl|Hg17|chr17 (54791484-54792744)
               


               
               766-1016, gnl|bosTau2|chr19 (4712900-4713164)
               

               
               766-1016, gnl|Hg17|chr17 (54792766-54793353)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sto (0.179824)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)

	48-747, gnl\|bosTau2\|chr19 (4712153-4712845)
	48-747, gnl\|Hg17\|chr17 (54791484-54792744)

	766-1016, gnl\|bosTau2\|chr19 (4712900-4713164)
	766-1016, gnl\|Hg17\|chr17 (54792766-54793353)