Ss1.1-Tra1-TCH01C070063.5
|
GGAGGCGGGGTCGCCAGCAGAGTTAAACTGGGCGGCGGCCCGGCAGCCTGGGGTCCCCAC
CGAGGCCATGGAGAGAGGCCGCGCGTACACCCGCCTGAACACCTTGCTGCAACACCTTGG
CGGCAGCTCCGCTGGGGCCGTCACAGCTCATCCCACTTCAGGGGCTGCCAAGTTCCAACC
TCAACAATTCCAGTATACTCGGGATAATAATGTTCTAAGCCTAGAACAGAGACAATTTTA
TGAAGAAAATGGGTTTCTTGTCATTAAAAATTTGGTATCTGATGCTGATATTGAACGCTT
TAGGGTTCAGTTTGAAAGAATCTGCAGAGAGGAGGTGAAACCACTGGGATTGATGCTGAT
GAGAGATGTGTCCATTGGCAAATCTGAATATGTTCCATGTGAGAAAATGGTCTCCAAGGT
CCAAAATTTCCAAGAAGATAAAGAACTCTTCAGATACTGCACCCTTCCTGAGATTCTGAA
GTATGTGGAGTGCTTCACTGGACCCAATATTATGGCCATGCATACAATGCTGATAAACAA
ACCTCCAGATACTGGCAAGAAGACATCCCGTCACCCCTTGCACCAGGATCTGCACTATTT
CCCCTTCAGGCCCAGCAATAACATTGTTTGTGCCTGGACGGCCATGGAGCACATCGACCG
GAAAAATGGCTGTCTGGTTGTGTTCCCAGGAACTCACAAAGGCACCTTGAAACCGCATGA
TTATCCCCAGTGGGACGGAGGAGTTAACCTCATGTTTCATGGGATCCAGGACTATGACAA
AAATAACACCCGGGTGTATGTCACAATGGAGAAAGGAGACACTGTTTTCTTTCATCCTCT
GCTCATCCATGGATCTGGTCGGAACAAAACTGAAGGATTCCGGAAGGCAATTTCCTGCCA
TTTTGCAGCTTCCGACTGCAAATACATTGACGTAAAGGGCACCAGTCAAGAAAAGATTGA
AAAGGAAATTGTAGACTTAACCCATAAATTCTATGGTTTGGAAACTGGCAGTCTGAAGAA
TGTATGGACATGGAAAGGGCGCCTCGTGAAAGGAGAAAGAATCAGCCTTTGAAATAGCCC
TTTGCTCAAACTCTTAAAGAAAACCAAGATGGAACAAAGTGTCAAAGGAAAATGTTTTCT
CCTGAGATGAAGTAATCTTTCCTATCCACTTGTTAACAAAATCAAAGTGCATAGATCAAG
TCCTAATTGCAGTGTATGGGTAATTTTGCAGTGGGGAGGAGTGACTTTAATGGATGTAAA
AACAGTGAAAGTGAAATATCACTGTTTTAAGGAAAACTTGGAGTTGCAAACAATAAAGAT
GATTGATGTATAATTAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAGGCGGGGTCGCCAGCAGAGTTAAACTGGGCGGCGGCCCGGCAGCCTGGGGTCCCCAC
CGAGGCCATGGAGAGAGGCCGCGCGTACACCCGCCTGAACACCTTGCTGCAACACCTTGG
CGGCAGCTCCGCTGGGGCCGTCACAGCTCATCCCACTTCAGGGGCTGCCAAGTTCCAACC
TCAACAATTCCAGTATACTCGGGATAATAATGTTCTAAGCCTAGAACAGAGACAATTTTA
TGAAGAAAATGGGTTTCTTGTCATTAAAAATTTGGTATCTGATGCTGATATTGAACGCTT
TAGGGTTCAGTTTGAAAGAATCTGCAGAGAGGAGGTGAAACCACTGGGATTGATGCTGAT
GAGAGATGTGTCCATTGGCAAATCTGAATATGTTCCATGTGAGAAAATGGTCTCCAAGGT
CCAAAATTTCCAAGAAGATAAAGAACTCTTCAGATACTGCACCCTTCCTGAGATTCTGAA
GTATGTGGAGTGCTTCACTGGACCCAATATTATGGCCATGCATACAATGCTGATAAACAA
ACCTCCAGATACTGGCAAGAAGACATCCCGTCACCCCTTGCACCAGGATCTGCACTATTT
CCCCTTCAGGCCCAGCAATAACATTGTTTGTGCCTGGACGGCCATGGAGCACATCGACCG
GAAAAATGGCTGTCTGGTTGTGTTCCCAGGAACTCACAAAGGCACCTTGAAACCGCATGA
TTATCCCCAGTGGGACGGAGGAGTTAACCTCATGTTTCATGGGATCCAGGACTATGACAA
AAATAACACCCGGGTGTATGTCACAATGGAGAAAGGAGACACTGTTTTCTTTCATCCTCT
GCTCATCCATGGATCTGGTCGGAACAAAACTGAAGGATTCCGGAAGGCAATTTCCTGCCA
TTTTGCAGCTTCCGACTGCAAATACATTGACGTAAAGGGCACCAGTCAAGAAAAGATTGA
AAAGGAAATTGTAGACTTAACCCATAAATTCTATGGTTTGGAAACTGGCAGTCTGAAGAA
TGTATGGACATGGAAAGGGCGCCTCGTGAAAGGAGAAAGAATCAGCCTTTGAAATAGCCC
TTTGCTCAAACTCTTAAAGAAAACCAAGATGGAACAAAGTGTCAAAGGAAAATGTTTTCT
CCTGAGATGAAGTAATCTTTCCTATCCACTTGTTAACAAAATCAAAGTGCATAGATCAAG
TCCTAATTGCAGTGTATGGGTAATTTTGCAGTGGGGAGGAGTGACTTTAATGGATGTAAA
AACAGTGAAAGTGAAATATCACTGTTTTAAGGAAAACTTGGAGTTGCAAACAATAAAGAT
GATTGATGTATAATTAAAAAAAAAAAAAAAAAAAAA
|
|
gi|2307006|gb|AAB65800.1| |
Protein identifier
|
gi|2307006|gb|AAB65800.1| |
|
290-476, gnl|bosTau2|chr13 (15359409-15359595) |
|
290-476, gnl|canFam2|chr2 (26030605-26030396) |
|
290-476, gnl|danRer3|chr4 (5009450-5009272) |
|
290-476, gnl|dasNov1|scaffold_14037 (10545-10713) |
|
290-476, gnl|echTel1|scaffold_284257 (7480-7669) |
|
290-476, gnl|fr1|chrUn (191162786-191163002) |
|
290-476, gnl|galGal2|chrUn (161756274-161756096) |
|
290-476, gnl|hg17|chr10 (13376429-13376638) |
|
290-476, gnl|Hg17|chr10 (13376616-13376430) |
|
290-476, gnl|loxAfr1|scaffold_11648 (12076-12291) |
|
290-476, gnl|mm7|chr2 (4844798-4844590) |
|
290-476, gnl|Mm7|chr2 (4844610-4844795) |
|
290-476, gnl|monDom2|scaffold_30 (12242784-12242989) |
|
290-476, gnl|oryCun1|scaffold_213171 (98198-98407) |
|
290-476, gnl|panTro1|chr8 (13765508-13765717) |
|
290-476, gnl|rheMac2|chr9 (13565697-13565906) |
|
290-476, gnl|rn3|chr17 (84438265-84438474) |
|
290-476, gnl|tetNig1|chrUn_random (54933524-54933706) |
|
290-476, gnl|xenTro1|scaffold_200 (407035-407217) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
290-476, gnl|bosTau2|chr13 (15359409-15359595) |
|
290-476, gnl|canFam2|chr2 (26030605-26030396) |
|
290-476, gnl|danRer3|chr4 (5009450-5009272) |
|
290-476, gnl|dasNov1|scaffold_14037 (10545-10713) |
|
290-476, gnl|echTel1|scaffold_284257 (7480-7669) |
|
290-476, gnl|fr1|chrUn (191162786-191163002) |
|
290-476, gnl|galGal2|chrUn (161756274-161756096) |
|
290-476, gnl|hg17|chr10 (13376429-13376638) |
|
290-476, gnl|Hg17|chr10 (13376616-13376430) |
|
290-476, gnl|loxAfr1|scaffold_11648 (12076-12291) |
|
290-476, gnl|mm7|chr2 (4844798-4844590) |
|
290-476, gnl|Mm7|chr2 (4844610-4844795) |
|
290-476, gnl|monDom2|scaffold_30 (12242784-12242989) |
|
290-476, gnl|oryCun1|scaffold_213171 (98198-98407) |
|
290-476, gnl|panTro1|chr8 (13765508-13765717) |
|
290-476, gnl|rheMac2|chr9 (13565697-13565906) |
|
290-476, gnl|rn3|chr17 (84438265-84438474) |
|
290-476, gnl|tetNig1|chrUn_random (54933524-54933706) |
|
290-476, gnl|xenTro1|scaffold_200 (407035-407217) |
|
lun (2.40783) |
|
tbr (2.00432) |
|
ssp (1.89728) |
|
vin (1.33023) |
|
cki (1.32188) |
|
sme (1.22175) |
|
ski (1.17388) |
|
ste (1.08167) |
|
pro (1.02407) |
|
hea (1.02249) |
|
ldo (0.970026) |
|
kid (0.908147) |
|
nms (0.855432) |
|
sag (0.730861) |
|
cty (0.62448) |
|
fat (0.58971) |
|
cli (0.458435) |
|
isp (0.451128) |
|
lin (0.436808) |
|
cst (0.420109) |
|
hlv (0.417769) |
|
tes (0.415628) |
|
che (0.408942) |
|
gul (0.355177) |
|
bfe (0.299715) |
|
nca (0.273748) |
|
lyg (0.266205) |
|
sug (0.254582) |
|
cbe (0.239234) |
|
mas (0.210305) |
|
jej (0.197844) |
|
eje (0.197668) |
|
aor (0.195274) |
|
ton (0.1755) |
|
nje (0.16592) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
csk (0.140746) |
|
cov (0.132153) |
|
ret (0.128733) |
|
bla (0.124347) |
|
tra (0.123092) |
|
cly (0.120642) |
|
eru (0.120048) |
|
clu (0.119646) |
|
pgl (0.118483) |
|
lun (2.40783) |
|
tbr (2.00432) |
|
ssp (1.89728) |
|
vin (1.33023) |
|
cki (1.32188) |
|
sme (1.22175) |
|
ski (1.17388) |
|
ste (1.08167) |
|
pro (1.02407) |
|
hea (1.02249) |
|
ldo (0.970026) |
|
kid (0.908147) |
|
nms (0.855432) |
|
sag (0.730861) |
|
cty (0.62448) |
|
fat (0.58971) |
|
cli (0.458435) |
|
isp (0.451128) |
|
lin (0.436808) |
|
cst (0.420109) |
|
hlv (0.417769) |
|
tes (0.415628) |
|
che (0.408942) |
|
gul (0.355177) |
|
bfe (0.299715) |
|
nca (0.273748) |
|
lyg (0.266205) |
|
sug (0.254582) |
|
cbe (0.239234) |
|
mas (0.210305) |
|
jej (0.197844) |
|
eje (0.197668) |
|
aor (0.195274) |
|
ton (0.1755) |
|
nje (0.16592) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
csk (0.140746) |
|
cov (0.132153) |
|
ret (0.128733) |
|
bla (0.124347) |
|
tra (0.123092) |
|
cly (0.120642) |
|
eru (0.120048) |
|
clu (0.119646) |
|
pgl (0.118483) |
