Ss1.1-Tra1-TCH01C070092.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
ATTGTGGAGGATGAGTCAGGGCGCGGGTCCCAGACTTTGGCAGATCTGGCAGGAGCGCTA GGTCACAGCGCTCAGGGCAGCGGCGGCCGTCGCGGGTTCGGAAATGCAGGCGGCGAAGAT GACCCCGAACGTGGGGCGGCAGCTGCTGAGGTTGGGGGGCGTAAGCTCGAGACTCTCTGC GCTCCCGGAGCAGCCCCGGCCCGGCCCTGCCTGGCGTCCCTATGCCCATGGGGCCGCCCA GACCAAGCCTGATGCCCTCTCCTCTGAGGCTTCGACCAGAGAAAAAAGGATCCAGACGGA ATCCAAATCCTTTGCTGTGGGCATGTTCAAAGGCCAGCTCACCACGGATCAGGTGTTTCC ATATCCGTCTGTGCTCAACGAGGACCAAACACAGGTTCTCCAAGAGCTGGTGGGGCCCGT GTCCCGTTTCTTTGAGGAGGTGAACGATCCTGCCAAGAATGACATGCTGGAGCGAGTGGA GGAGACCACTATGCAGGGCCTCAAGGAGCTGGGGGCCTTTGGTCTGCAAGTGCCCAGTGA GCTGGGTGGCGTGGGCCTCTGCAACACTCAGTACGCCCGCTTGGTGGAGATTGTCGGAAT GCACGACCTCGGCGTGGGCATCGTCCTGGGGGCCCATCAGAGCATTGGTTTCAAAGGCAT CCTGCTTTTCGGCACAAAGGCCCAGAAAGAAAAATACCTCCCCAAAGTGGCATCAGGGGA GGTCATGGCTGCGTTCTGTCTAACTGAGCCCTCCAGTGGGTCGGATGCAGCCTCCATCCG CAGCTCAGCTGTGCCCAGCCCCTGTGGAAAATACTACACTCTCAATGGAAGCAAGATTTG GATCAGTAATGGAGGCCTGGCCGATCTCTTCACGGTCTTTGCCAAGACACCAGTTACAGA CCCAGCCACAGGGGCCGTGAAGGAGAAGATCACAGCTTTCCTGGTGGAGAGGGGCTTTGG AGGTGTCACCCACGGGCCCCCCGAGAAGAAGATGGGCATCAAGGCCTCAAACACGGCGGA GGTGTACTTTGACGAAGTGCAAGTGCCCACAGAGAACGTGCTGGGCGAGGTCGGGGGCGG CTTCAAGGTCGCCATGCACATTCTCAACAATGGAAGGTTTGGCATGGCCGCGGCCATGGC CGGCACCATGAAGGCCATCATTGCCAAGGCGGTGAATCATGCTGCTAATCGTACCCAGTT CGGGGAGAAAATTCACAACTTTGGGGTGATCCAGGAGAAGCTTGCCCGGATGGCTATGCT GCAGTATGTGACTGAGTCCATGGCCTACATGGTGAGCGCCAACATGGACCAGGGATCCAC GGACTTCCAGATAGAGGCCGCCATCAGCAAGATCTTTGGCTCGGAGGCAGCCTGGAAGGT GACAGATGAGTGCATCCAAGTCATGGGGGGCATGGGCTTCATGAAGGAGCCCGGGGTAGA GCGTGTGCTCCGAGACCTGCGCATCTTCCGGATCTTTGAGGGGACGAATGACATTCTCCG GCTCTTTGTGGCTCTGCAAGGCTGTATGGACAAAGGAAAGGAACTCTCTGGGCTGGGCAA TGCTCTCAAGAATCCTTTTGGGAATGCCGGCCTCCTGCTGGGAGAGGCCAGCAAACAGCT GAGGCGGCGGGCAGGGCTGGGCAGTGGCCTGAGTCTCAGCGGCATCATCCACCCAGAACT GAGTCGGAGCGGCCAGCTGGCAGTGCAGGCTCTGGAGCAGTTTGCCACCGTGGTGGAGGT GAAGCTGATAAAACACAAGAAGGATATTGTCAATGAACAGTTCGTGCTGCAGCGCCTGGC AGATAGTGCCATTGACCTCTACGCCATGGTGGTGGTTCTGTCCAGGGCCTCCAGGTCCCT GAGTGAGGGCCAGTCCACAGCCCAGCACGAGAAAATGCTCTGCGACAGCTGGTGCATCGA GGCTGCAGCCCGGATCCGGGAGAACATGGCTGCTCTGCAGTCTGACCCGCAGCAGCAGGA GCTCTTCCGTAACTTCAAAAGCATCTCCAAGGCCTTGATAGAGCGGGGTGGCGTGGTCAC CAGCAACCCCCTTGGCGTCTGAATACTCCCGACCAGAGCCTGGCCCAGAATGTGCCTTCT CTCAAGCCAAAGCCCAGGCCCCTTTCCTGCCCGTCCCGGTTCTGCCTTCAAAGGGGCCTC GGCTCAGAACGGTGCCTGCTCTCGGAGGGCGTGCTTACTGCCTCCCAAATAAAAAGTCTC TCTCAAAAAAAACTCTGCTGCCGTCTGTCCATCCTCTCCCTCGCCTGCCTCCCTCCCAAA AAAAGGAGCCAGAGGCGTGGGGAGTTTTCCCCTATTGCTTTATTTGGTGTTTTATACAAA TGACTAAAATAAATAAAGTTAACA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
ATTGTGGAGGATGAGTCAGGGCGCGGGTCCCAGACTTTGGCAGATCTGGCAGGAGCGCTA GGTCACAGCGCTCAGGGCAGCGGCGGCCGTCGCGGGTTCGGAAATGCAGGCGGCGAAGAT GACCCCGAACGTGGGGCGGCAGCTGCTGAGGTTGGGGGGCGTAAGCTCGAGACTCTCTGC GCTCCCGGAGCAGCCCCGGCCCGGCCCTGCCTGGCGTCCCTATGCCCATGGGGCCGCCCA GACCAAGCCTGATGCCCTCTCCTCTGAGGCTTCGACCAGAGAAAAAAGGATCCAGACGGA ATCCAAATCCTTTGCTGTGGGCATGTTCAAAGGCCAGCTCACCACGGATCAGGTGTTTCC ATATCCGTCTGTGCTCAACGAGGACCAAACACAGGTTCTCCAAGAGCTGGTGGGGCCCGT GTCCCGTTTCTTTGAGGAGGTGAACGATCCTGCCAAGAATGACATGCTGGAGCGAGTGGA GGAGACCACTATGCAGGGCCTCAAGGAGCTGGGGGCCTTTGGTCTGCAAGTGCCCAGTGA GCTGGGTGGCGTGGGCCTCTGCAACACTCAGTACGCCCGCTTGGTGGAGATTGTCGGAAT GCACGACCTCGGCGTGGGCATCGTCCTGGGGGCCCATCAGAGCATTGGTTTCAAAGGCAT CCTGCTTTTCGGCACAAAGGCCCAGAAAGAAAAATACCTCCCCAAAGTGGCATCAGGGGA GGTCATGGCTGCGTTCTGTCTAACTGAGCCCTCCAGTGGGTCGGATGCAGCCTCCATCCG CAGCTCAGCTGTGCCCAGCCCCTGTGGAAAATACTACACTCTCAATGGAAGCAAGATTTG GATCAGTAATGGAGGCCTGGCCGATCTCTTCACGGTCTTTGCCAAGACACCAGTTACAGA CCCAGCCACAGGGGCCGTGAAGGAGAAGATCACAGCTTTCCTGGTGGAGAGGGGCTTTGG AGGTGTCACCCACGGGCCCCCCGAGAAGAAGATGGGCATCAAGGCCTCAAACACGGCGGA GGTGTACTTTGACGAAGTGCAAGTGCCCACAGAGAACGTGCTGGGCGAGGTCGGGGGCGG CTTCAAGGTCGCCATGCACATTCTCAACAATGGAAGGTTTGGCATGGCCGCGGCCATGGC CGGCACCATGAAGGCCATCATTGCCAAGGCGGTGAATCATGCTGCTAATCGTACCCAGTT CGGGGAGAAAATTCACAACTTTGGGGTGATCCAGGAGAAGCTTGCCCGGATGGCTATGCT GCAGTATGTGACTGAGTCCATGGCCTACATGGTGAGCGCCAACATGGACCAGGGATCCAC GGACTTCCAGATAGAGGCCGCCATCAGCAAGATCTTTGGCTCGGAGGCAGCCTGGAAGGT GACAGATGAGTGCATCCAAGTCATGGGGGGCATGGGCTTCATGAAGGAGCCCGGGGTAGA GCGTGTGCTCCGAGACCTGCGCATCTTCCGGATCTTTGAGGGGACGAATGACATTCTCCG GCTCTTTGTGGCTCTGCAAGGCTGTATGGACAAAGGAAAGGAACTCTCTGGGCTGGGCAA TGCTCTCAAGAATCCTTTTGGGAATGCCGGCCTCCTGCTGGGAGAGGCCAGCAAACAGCT GAGGCGGCGGGCAGGGCTGGGCAGTGGCCTGAGTCTCAGCGGCATCATCCACCCAGAACT GAGTCGGAGCGGCCAGCTGGCAGTGCAGGCTCTGGAGCAGTTTGCCACCGTGGTGGAGGT GAAGCTGATAAAACACAAGAAGGATATTGTCAATGAACAGTTCGTGCTGCAGCGCCTGGC AGATAGTGCCATTGACCTCTACGCCATGGTGGTGGTTCTGTCCAGGGCCTCCAGGTCCCT GAGTGAGGGCCAGTCCACAGCCCAGCACGAGAAAATGCTCTGCGACAGCTGGTGCATCGA GGCTGCAGCCCGGATCCGGGAGAACATGGCTGCTCTGCAGTCTGACCCGCAGCAGCAGGA GCTCTTCCGTAACTTCAAAAGCATCTCCAAGGCCTTGATAGAGCGGGGTGGCGTGGTCAC CAGCAACCCCCTTGGCGTCTGAATACTCCCGACCAGAGCCTGGCCCAGAATGTGCCTTCT CTCAAGCCAAAGCCCAGGCCCCTTTCCTGCCCGTCCCGGTTCTGCCTTCAAAGGGGCCTC GGCTCAGAACGGTGCCTGCTCTCGGAGGGCGTGCTTACTGCCTCCCAAATAAAAAGTCTC TCTCAAAAAAAACTCTGCTGCCGTCTGTCCATCCTCTCCCTCGCCTGCCTCCCTCCCAAA AAAAGGAGCCAGAGGCGTGGGGAGTTTTCCCCTATTGCTTTATTTGGTGTTTTATACAAA TGACTAAAATAAATAAAGTTAACA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
1013-2364, + strand, RNAz p=0.946281 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
1013-2364, + strand, RNAz p=0.946281 |
Aligned organism(s): 72 entry(ies) | More info |
Aligned organism(s): 72 entry(ies) | Help | Less info |
1-165, gnl|bosTau2|chr19 (20477447-20477607) | |
1-165, gnl|Hg17|chr17 (7063926-7064089) | |
1-165, gnl|Mm7|chr11 (70096997-70096837) | |
569-722, gnl|bosTau2|chr19 (20479018-20479171) | |
569-722, gnl|canFam2|chr5 (35187289-35187447) | |
569-722, gnl|danRer3|chr7 (51724215-51724373) | |
569-722, gnl|dasNov1|scaffold_30068 (13482-13335) | |
569-722, gnl|echTel1|scaffold_306143 (5913-5755) | |
569-722, gnl|fr1|chrUn (11459437-11459287) | |
569-722, gnl|hg17|chr17 (7065578-7065736) | |
569-722, gnl|Hg17|chr17 (7065578-7065731) | |
569-722, gnl|loxAfr1|scaffold_101357 (3703-3545) | |
569-722, gnl|mm7|chr11 (70095157-70094999) | |
569-722, gnl|Mm7|chr11 (70095155-70095002) | |
569-722, gnl|monDom2|scaffold_66 (4108024-4108186) | |
569-722, gnl|oryCun1|scaffold_188687 (6942-6784) | |
569-722, gnl|panTro1|chr19_random (44687819-44687661) | |
569-722, gnl|rheMac2|chr16 (6950443-6950601) | |
569-722, gnl|rn3|chr10 (56873241-56873083) | |
569-722, gnl|tetNig1|chrUn_random (46741262-46741414) | |
844-972, gnl|bosTau2|chr19 (20479645-20479773) | |
844-972, gnl|canFam2|chr5 (35187857-35188020) | |
844-972, gnl|danRer3|chr7 (51730031-51730184) | |
844-972, gnl|dasNov1|scaffold_30068 (13211-13087) | |
844-972, gnl|echTel1|scaffold_306143 (5376-5211) | |
844-972, gnl|fr1|chrUn (11459018-11458857) | |
844-972, gnl|hg17|chr17 (7066193-7066354) | |
844-972, gnl|Hg17|chr17 (7066217-7066345) | |
844-972, gnl|mm7|chr11 (70094682-70094525) | |
844-972, gnl|Mm7|chr11 (70094660-70094532) | |
844-972, gnl|monDom2|scaffold_66 (4108800-4108968) | |
844-972, gnl|oryCun1|scaffold_188687 (6408-6248) | |
844-972, gnl|panTro1|chr19_random (44687204-44687040) | |
844-972, gnl|rheMac2|chr16 (6951061-6951224) | |
844-972, gnl|rn3|chr10 (56872769-56872612) | |
844-972, gnl|tetNig1|chrUn_random (46741706-46741865) | |
844-972, gnl|xenTro1|scaffold_3728 (720-889) | |
974-1175, gnl|bosTau2|chr19 (20480104-20480305) | |
974-1175, gnl|canFam2|chr5 (35188382-35188589) | |
974-1175, gnl|danRer3|chr7 (51730664-51730871) | |
974-1175, gnl|dasNov1|scaffold_30068 (13086-12885) | |
974-1175, gnl|echTel1|scaffold_306143 (4658-4451) | |
974-1175, gnl|fr1|chrUn (11458781-11458575) | |
974-1175, gnl|hg17|chr17 (7066709-7066916) | |
974-1175, gnl|Hg17|chr17 (7066711-7066912) | |
974-1175, gnl|mm7|chr11 (70094223-70094017) | |
974-1175, gnl|Mm7|chr11 (70094219-70094018) | |
974-1175, gnl|monDom2|scaffold_66 (4109280-4109487) | |
974-1175, gnl|oryCun1|scaffold_188687 (5910-5703) | |
974-1175, gnl|panTro1|chr19_random (44686685-44686478) | |
974-1175, gnl|rheMac2|chr16 (6951576-6951783) | |
974-1175, gnl|rn3|chr10 (56872282-56872076) | |
974-1175, gnl|tetNig1|chrUn_random (46741932-46742138) | |
974-1175, gnl|xenTro1|scaffold_3728 (1019-1224) | |
1425-1536, gnl|bosTau2|chr19 (20481405-20481516) | |
1425-1536, gnl|canFam2|chr5 (35189523-35189618) | |
1425-1536, gnl|danRer3|chr7 (51748023-51748104) | |
1425-1536, gnl|echTel1|scaffold_306143 (3179-3072) | |
1425-1536, gnl|fr1|chrUn (11456613-11456538) | |
1425-1536, gnl|hg17|chr17 (7067991-7068085) | |
1425-1536, gnl|Hg17|chr17 (7068009-7068118) | |
1425-1536, gnl|loxAfr1|scaffold_101357 (1190-1096) | |
1425-1536, gnl|mm7|chr11 (70093042-70092948) | |
1425-1536, gnl|Mm7|chr11 (70093022-70092911) | |
1425-1536, gnl|monDom2|scaffold_66 (4111461-4111548) | |
1425-1536, gnl|oryCun1|scaffold_188687 (4628-4538) | |
1425-1536, gnl|panTro1|chr19_random (44685403-44685309) | |
1425-1536, gnl|rheMac2|chr16 (6953379-6953473) | |
1425-1536, gnl|rn3|chr10 (56871103-56871009) | |
1920-2364, gnl|bosTau2|chr19 (20482434-20482878) | |
1920-2364, gnl|Hg17|chr17 (7068998-7069446) | |
1920-2364, gnl|Mm7|chr11 (70092012-70091626) |
Aligned organism(s): 72 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-165, gnl|bosTau2|chr19 (20477447-20477607) | |
1-165, gnl|Hg17|chr17 (7063926-7064089) | |
1-165, gnl|Mm7|chr11 (70096997-70096837) | |
569-722, gnl|bosTau2|chr19 (20479018-20479171) | |
569-722, gnl|canFam2|chr5 (35187289-35187447) | |
569-722, gnl|danRer3|chr7 (51724215-51724373) | |
569-722, gnl|dasNov1|scaffold_30068 (13482-13335) | |
569-722, gnl|echTel1|scaffold_306143 (5913-5755) | |
569-722, gnl|fr1|chrUn (11459437-11459287) | |
569-722, gnl|hg17|chr17 (7065578-7065736) | |
569-722, gnl|Hg17|chr17 (7065578-7065731) | |
569-722, gnl|loxAfr1|scaffold_101357 (3703-3545) | |
569-722, gnl|mm7|chr11 (70095157-70094999) | |
569-722, gnl|Mm7|chr11 (70095155-70095002) | |
569-722, gnl|monDom2|scaffold_66 (4108024-4108186) | |
569-722, gnl|oryCun1|scaffold_188687 (6942-6784) | |
569-722, gnl|panTro1|chr19_random (44687819-44687661) | |
569-722, gnl|rheMac2|chr16 (6950443-6950601) | |
569-722, gnl|rn3|chr10 (56873241-56873083) | |
569-722, gnl|tetNig1|chrUn_random (46741262-46741414) | |
844-972, gnl|bosTau2|chr19 (20479645-20479773) | |
844-972, gnl|canFam2|chr5 (35187857-35188020) | |
844-972, gnl|danRer3|chr7 (51730031-51730184) | |
844-972, gnl|dasNov1|scaffold_30068 (13211-13087) | |
844-972, gnl|echTel1|scaffold_306143 (5376-5211) | |
844-972, gnl|fr1|chrUn (11459018-11458857) | |
844-972, gnl|hg17|chr17 (7066193-7066354) | |
844-972, gnl|Hg17|chr17 (7066217-7066345) | |
844-972, gnl|mm7|chr11 (70094682-70094525) | |
844-972, gnl|Mm7|chr11 (70094660-70094532) | |
844-972, gnl|monDom2|scaffold_66 (4108800-4108968) | |
844-972, gnl|oryCun1|scaffold_188687 (6408-6248) | |
844-972, gnl|panTro1|chr19_random (44687204-44687040) | |
844-972, gnl|rheMac2|chr16 (6951061-6951224) | |
844-972, gnl|rn3|chr10 (56872769-56872612) | |
844-972, gnl|tetNig1|chrUn_random (46741706-46741865) | |
844-972, gnl|xenTro1|scaffold_3728 (720-889) | |
974-1175, gnl|bosTau2|chr19 (20480104-20480305) | |
974-1175, gnl|canFam2|chr5 (35188382-35188589) | |
974-1175, gnl|danRer3|chr7 (51730664-51730871) | |
974-1175, gnl|dasNov1|scaffold_30068 (13086-12885) | |
974-1175, gnl|echTel1|scaffold_306143 (4658-4451) | |
974-1175, gnl|fr1|chrUn (11458781-11458575) | |
974-1175, gnl|hg17|chr17 (7066709-7066916) | |
974-1175, gnl|Hg17|chr17 (7066711-7066912) | |
974-1175, gnl|mm7|chr11 (70094223-70094017) | |
974-1175, gnl|Mm7|chr11 (70094219-70094018) | |
974-1175, gnl|monDom2|scaffold_66 (4109280-4109487) | |
974-1175, gnl|oryCun1|scaffold_188687 (5910-5703) | |
974-1175, gnl|panTro1|chr19_random (44686685-44686478) | |
974-1175, gnl|rheMac2|chr16 (6951576-6951783) | |
974-1175, gnl|rn3|chr10 (56872282-56872076) | |
974-1175, gnl|tetNig1|chrUn_random (46741932-46742138) | |
974-1175, gnl|xenTro1|scaffold_3728 (1019-1224) | |
1425-1536, gnl|bosTau2|chr19 (20481405-20481516) | |
1425-1536, gnl|canFam2|chr5 (35189523-35189618) | |
1425-1536, gnl|danRer3|chr7 (51748023-51748104) | |
1425-1536, gnl|echTel1|scaffold_306143 (3179-3072) | |
1425-1536, gnl|fr1|chrUn (11456613-11456538) | |
1425-1536, gnl|hg17|chr17 (7067991-7068085) | |
1425-1536, gnl|Hg17|chr17 (7068009-7068118) | |
1425-1536, gnl|loxAfr1|scaffold_101357 (1190-1096) | |
1425-1536, gnl|mm7|chr11 (70093042-70092948) | |
1425-1536, gnl|Mm7|chr11 (70093022-70092911) | |
1425-1536, gnl|monDom2|scaffold_66 (4111461-4111548) | |
1425-1536, gnl|oryCun1|scaffold_188687 (4628-4538) | |
1425-1536, gnl|panTro1|chr19_random (44685403-44685309) | |
1425-1536, gnl|rheMac2|chr16 (6953379-6953473) | |
1425-1536, gnl|rn3|chr10 (56871103-56871009) | |
1920-2364, gnl|bosTau2|chr19 (20482434-20482878) | |
1920-2364, gnl|Hg17|chr17 (7068998-7069446) | |
1920-2364, gnl|Mm7|chr11 (70092012-70091626) |
Expressed library(ies): 26 entry(ies) | More info |
Expressed library(ies): 26 entry(ies) | Help | Less info |
mas (1.26183) | |
hlv (0.835538) | |
fty (0.527519) | |
cov (0.396458) | |
cli (0.305623) | |
che (0.272628) | |
cly (0.241284) | |
nms (0.213858) | |
jej (0.197844) | |
col (0.195008) | |
nep (0.183925) | |
ill (0.175593) | |
ton (0.1755) | |
fbs (0.175346) | |
nco (0.161734) | |
eli (0.151814) | |
pty (0.142714) | |
cst (0.140036) | |
ssp (0.13552) | |
pla (0.133672) | |
eru (0.120048) | |
ecc (0.115035) | |
jca (0.11396) | |
cty (0.10408) | |
nbm (0.0993246) | |
eje (0.0988338) |
Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
mas (1.26183) | |
hlv (0.835538) | |
fty (0.527519) | |
cov (0.396458) | |
cli (0.305623) | |
che (0.272628) | |
cly (0.241284) | |
nms (0.213858) | |
jej (0.197844) | |
col (0.195008) | |
nep (0.183925) | |
ill (0.175593) | |
ton (0.1755) | |
fbs (0.175346) | |
nco (0.161734) | |
eli (0.151814) | |
pty (0.142714) | |
cst (0.140036) | |
ssp (0.13552) | |
pla (0.133672) | |
eru (0.120048) | |
ecc (0.115035) | |
jca (0.11396) | |
cty (0.10408) | |
nbm (0.0993246) | |
eje (0.0988338) |