Ss1.1-Tra1-TCH01C080010.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCCCCCGCTGCCGCCGCGACCGCCACCGGTGCCGCCTTTGCCGTTGCCTCTGCTGCCTC TGCCCCCGCGGTCGCCCCTGCCCGCCGCTGCCGCCGCGACCGCCACCGGTGCCGCCTTTG CCGTTGCCTCTGCTGCCTCTGCCCCCGCGGTCGCCCCTGCCCGGCCTGGTCCGGCGTCGG GGTGATCCCTGCAGGGCGCCCGCTGGTGTCCCTGGAGCATGGGAGGCTGCTGAGCTTGGC CGGTGGTGTCTGGCAGGAGCTGCGTGTCTCACCCCGTGGCAGGGAGGGCGTCCATGGCTG CAGCCAACAAGGGCAACAAGCCCAGAGTCCGGAGTATCCGCTTTGCAACAGGCCATGATG CAGAAGGCTCCCAGAGCCATGTCCACTTTGATGAGAAGCTGCATGACTCCGTGGTCATGG TCAGCCAGGAGAGTGAGAGCAGCTTTCTGGTCAAGGTTGGCTTCCTGAAGATCCTGCACA GGTATGAGATTACCTTCACTCTGCCCCCAGTGCACAGGCTGAGCAAGGACGTCCGAGAGG CACCTGTCCCCAGCCTGCACCTCAAGCTCCTCAGCGTCATGCCCATCCCAGAAGGTTACA GCGTCAAGTGTGAGTACTCGGCGCACAAGGAGGGCGTCCTCAAGGAGGAGATGCTGCTGG CCTGTGAAGGTGGCACCGGCACCTGCGTGCGGGTCGTGGTACAGGCACGCGTCATGGACC GACACCACGGCACACCCATGCTGCTAGATGGTGTCAAGTGCGTGGGTGCTGAGCTTGAAT ACGACTCGGAGCACAGTGATTGGCACGGCTTCGACTGAGGCCCGCGCCCCCGCCTGCCTT GGGGCCCCTCAGCCTTAAACCCCACCTCCTCTCCCTGAATGCTGCGTGACGGTGTAGCTT CCGCACCCCTCCCCGGGGTGGGCGTGGAGGTGGAGGGTCCAAGGGCCTCCAAGCCAGAGC CCTGCCCACACCTCTCACCTCATATGTGTGCCACCTCCCTGCCTCCCCAGCGTCCTCCTC TCCCACTTCCTCCTCTCGGTGTGCCTCAGTCTCCTGCCGGAAGAAATGGGTTGAGCCCCC AGGGAGGCTATCTGAGGAGGGATGGGGGAGAGCCTGGGGCGGGTTTTACCAACCATCCTC CCCAAGCCATAGGGGCTCCTGCCAGGGCCTGGGAGAGGAGGGAGCTGGCTCTGTGGCATA GCTGCCACCAGTATTGCTGCTGCTGTCTCGCTTTGGCCACCTCTCCTGTCCCCTCCCTCT TTTCCACTGCTGTCCATGGTGAGTAGGAGGGAGGTGCGGTCCCCAGCCCCTACTCCCCAG GTCTGTGTTACTTGGTTTTTAAATGACTGGTTGGGCTAAAATCCTAAAGAAATAAAACTT CCATTGGACACCAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCCCCCGCTGCCGCCGCGACCGCCACCGGTGCCGCCTTTGCCGTTGCCTCTGCTGCCTC TGCCCCCGCGGTCGCCCCTGCCCGCCGCTGCCGCCGCGACCGCCACCGGTGCCGCCTTTG CCGTTGCCTCTGCTGCCTCTGCCCCCGCGGTCGCCCCTGCCCGGCCTGGTCCGGCGTCGG GGTGATCCCTGCAGGGCGCCCGCTGGTGTCCCTGGAGCATGGGAGGCTGCTGAGCTTGGC CGGTGGTGTCTGGCAGGAGCTGCGTGTCTCACCCCGTGGCAGGGAGGGCGTCCATGGCTG CAGCCAACAAGGGCAACAAGCCCAGAGTCCGGAGTATCCGCTTTGCAACAGGCCATGATG CAGAAGGCTCCCAGAGCCATGTCCACTTTGATGAGAAGCTGCATGACTCCGTGGTCATGG TCAGCCAGGAGAGTGAGAGCAGCTTTCTGGTCAAGGTTGGCTTCCTGAAGATCCTGCACA GGTATGAGATTACCTTCACTCTGCCCCCAGTGCACAGGCTGAGCAAGGACGTCCGAGAGG CACCTGTCCCCAGCCTGCACCTCAAGCTCCTCAGCGTCATGCCCATCCCAGAAGGTTACA GCGTCAAGTGTGAGTACTCGGCGCACAAGGAGGGCGTCCTCAAGGAGGAGATGCTGCTGG CCTGTGAAGGTGGCACCGGCACCTGCGTGCGGGTCGTGGTACAGGCACGCGTCATGGACC GACACCACGGCACACCCATGCTGCTAGATGGTGTCAAGTGCGTGGGTGCTGAGCTTGAAT ACGACTCGGAGCACAGTGATTGGCACGGCTTCGACTGAGGCCCGCGCCCCCGCCTGCCTT GGGGCCCCTCAGCCTTAAACCCCACCTCCTCTCCCTGAATGCTGCGTGACGGTGTAGCTT CCGCACCCCTCCCCGGGGTGGGCGTGGAGGTGGAGGGTCCAAGGGCCTCCAAGCCAGAGC CCTGCCCACACCTCTCACCTCATATGTGTGCCACCTCCCTGCCTCCCCAGCGTCCTCCTC TCCCACTTCCTCCTCTCGGTGTGCCTCAGTCTCCTGCCGGAAGAAATGGGTTGAGCCCCC AGGGAGGCTATCTGAGGAGGGATGGGGGAGAGCCTGGGGCGGGTTTTACCAACCATCCTC CCCAAGCCATAGGGGCTCCTGCCAGGGCCTGGGAGAGGAGGGAGCTGGCTCTGTGGCATA GCTGCCACCAGTATTGCTGCTGCTGTCTCGCTTTGGCCACCTCTCCTGTCCCCTCCCTCT TTTCCACTGCTGTCCATGGTGAGTAGGAGGGAGGTGCGGTCCCCAGCCCCTACTCCCCAG GTCTGTGTTACTTGGTTTTTAAATGACTGGTTGGGCTAAAATCCTAAAGAAATAAAACTT CCATTGGACACCAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 837-1218, - strand, RNAz p=0.999967 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 837-1218, - strand, RNAz p=0.999967 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 195-313, gnl|bosTau2|chr13 (33741422-33741304) | |
| 195-313, gnl|canFam2|chr24 (20591473-20591336) | |
| 195-313, gnl|canFam2|chr24 (20591470-20591343) | |
| 195-313, gnl|canFam2|chr24 (20591928-20591057) | |
| 195-313, gnl|echTel1|scaffold_159243 (423-279) | |
| 195-313, gnl|echTel1|scaffold_159243 (420-293) | |
| 195-313, gnl|echTel1|scaffold_159243 (837-22) | |
| 195-313, gnl|hg17|chr12 (47481123-47481239) | |
| 195-313, gnl|hg17|chr16 (30740841-30740965) | |
| 195-313, gnl|hg17|chr20 (3688244-3689135) | |
| 195-313, gnl|Hg17|chr20 (3688834-3688728) | |
| 195-313, gnl|loxAfr1|scaffold_19525 (37856-37712) | |
| 195-313, gnl|loxAfr1|scaffold_19525 (37853-37726) | |
| 195-313, gnl|loxAfr1|scaffold_19525 (38408-37448) | |
| 195-313, gnl|mm7|chr2 (130894447-130894570) | |
| 195-313, gnl|mm7|chr2 (130894450-130894577) | |
| 195-313, gnl|mm7|chr2 (130894035-130894847) | |
| 195-313, gnl|Mm7|chr2 (130894564-130894446) | |
| 195-313, gnl|oryCun1|scaffold_203294 (97652-97774) | |
| 195-313, gnl|oryCun1|scaffold_203294 (97655-97781) | |
| 195-313, gnl|oryCun1|scaffold_203294 (97254-98048) | |
| 195-313, gnl|panTro1|chr10 (48657217-48657333) | |
| 195-313, gnl|panTro1|chr18 (31522937-31523075) | |
| 195-313, gnl|panTro1|chr21 (3667497-3668387) | |
| 195-313, gnl|rheMac2|chr10 (37085256-37085374) | |
| 195-313, gnl|rheMac2|chr10 (37085259-37085373) | |
| 195-313, gnl|rheMac2|chr10 (37084757-37085643) | |
| 195-313, gnl|rn3|chr3 (118764011-118764134) | |
| 195-313, gnl|rn3|chr3 (118764014-118764138) | |
| 195-313, gnl|rn3|chr3 (118763606-118764402) | |
| 447-596, gnl|bosTau2|chr13 (33737576-33737427) | |
| 447-596, gnl|canFam2|chr24 (20595595-20595403) | |
| 447-596, gnl|danRer3|chr13 (19302013-19301820) | |
| 447-596, gnl|fr1|chrUn (150436922-150436769) | |
| 447-596, gnl|hg17|chr20 (3684105-3684294) | |
| 447-596, gnl|Hg17|chr20 (3684263-3684114) | |
| 447-596, gnl|loxAfr1|scaffold_19525 (42016-41830) | |
| 447-596, gnl|mm7|chr2 (130888998-130889185) | |
| 447-596, gnl|Mm7|chr2 (130889156-130889007) | |
| 447-596, gnl|oryCun1|scaffold_203294 (93154-93343) | |
| 447-596, gnl|panTro1|chr21 (3663360-3663549) | |
| 447-596, gnl|rheMac2|chr10 (37080622-37080811) | |
| 447-596, gnl|rn3|chr3 (118758767-118758953) | |
| 447-596, gnl|tetNig1|chrUn_random (21618601-21618434) | |
| 717-1396, gnl|bosTau2|chr13 (33736230-33735578) | |
| 717-1396, gnl|Hg17|chr20 (3682806-3682154) | |
| 717-1396, gnl|Mm7|chr2 (130887829-130887167) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 195-313, gnl|bosTau2|chr13 (33741422-33741304) | |
| 195-313, gnl|canFam2|chr24 (20591473-20591336) | |
| 195-313, gnl|canFam2|chr24 (20591470-20591343) | |
| 195-313, gnl|canFam2|chr24 (20591928-20591057) | |
| 195-313, gnl|echTel1|scaffold_159243 (423-279) | |
| 195-313, gnl|echTel1|scaffold_159243 (420-293) | |
| 195-313, gnl|echTel1|scaffold_159243 (837-22) | |
| 195-313, gnl|hg17|chr12 (47481123-47481239) | |
| 195-313, gnl|hg17|chr16 (30740841-30740965) | |
| 195-313, gnl|hg17|chr20 (3688244-3689135) | |
| 195-313, gnl|Hg17|chr20 (3688834-3688728) | |
| 195-313, gnl|loxAfr1|scaffold_19525 (37856-37712) | |
| 195-313, gnl|loxAfr1|scaffold_19525 (37853-37726) | |
| 195-313, gnl|loxAfr1|scaffold_19525 (38408-37448) | |
| 195-313, gnl|mm7|chr2 (130894447-130894570) | |
| 195-313, gnl|mm7|chr2 (130894450-130894577) | |
| 195-313, gnl|mm7|chr2 (130894035-130894847) | |
| 195-313, gnl|Mm7|chr2 (130894564-130894446) | |
| 195-313, gnl|oryCun1|scaffold_203294 (97652-97774) | |
| 195-313, gnl|oryCun1|scaffold_203294 (97655-97781) | |
| 195-313, gnl|oryCun1|scaffold_203294 (97254-98048) | |
| 195-313, gnl|panTro1|chr10 (48657217-48657333) | |
| 195-313, gnl|panTro1|chr18 (31522937-31523075) | |
| 195-313, gnl|panTro1|chr21 (3667497-3668387) | |
| 195-313, gnl|rheMac2|chr10 (37085256-37085374) | |
| 195-313, gnl|rheMac2|chr10 (37085259-37085373) | |
| 195-313, gnl|rheMac2|chr10 (37084757-37085643) | |
| 195-313, gnl|rn3|chr3 (118764011-118764134) | |
| 195-313, gnl|rn3|chr3 (118764014-118764138) | |
| 195-313, gnl|rn3|chr3 (118763606-118764402) | |
| 447-596, gnl|bosTau2|chr13 (33737576-33737427) | |
| 447-596, gnl|canFam2|chr24 (20595595-20595403) | |
| 447-596, gnl|danRer3|chr13 (19302013-19301820) | |
| 447-596, gnl|fr1|chrUn (150436922-150436769) | |
| 447-596, gnl|hg17|chr20 (3684105-3684294) | |
| 447-596, gnl|Hg17|chr20 (3684263-3684114) | |
| 447-596, gnl|loxAfr1|scaffold_19525 (42016-41830) | |
| 447-596, gnl|mm7|chr2 (130888998-130889185) | |
| 447-596, gnl|Mm7|chr2 (130889156-130889007) | |
| 447-596, gnl|oryCun1|scaffold_203294 (93154-93343) | |
| 447-596, gnl|panTro1|chr21 (3663360-3663549) | |
| 447-596, gnl|rheMac2|chr10 (37080622-37080811) | |
| 447-596, gnl|rn3|chr3 (118758767-118758953) | |
| 447-596, gnl|tetNig1|chrUn_random (21618601-21618434) | |
| 717-1396, gnl|bosTau2|chr13 (33736230-33735578) | |
| 717-1396, gnl|Hg17|chr20 (3682806-3682154) | |
| 717-1396, gnl|Mm7|chr2 (130887829-130887167) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| pty (0.428143) | |
| elu (0.385356) | |
| nep (0.36785) | |
| csp (0.322373) | |
| cag (0.302389) | |
| nbm (0.297974) | |
| lnt (0.284616) | |
| pla (0.267344) | |
| eep (0.245128) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| sug (0.127291) | |
| spc (0.113366) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.428143) | |
| elu (0.385356) | |
| nep (0.36785) | |
| csp (0.322373) | |
| cag (0.302389) | |
| nbm (0.297974) | |
| lnt (0.284616) | |
| pla (0.267344) | |
| eep (0.245128) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| sug (0.127291) | |
| spc (0.113366) |