Ss1.1-Tra1-TCH01C080094.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCACGAGATTTGGAGCTCGCGGGAAAACTTGTATGTGCATCTGGGCTGAGGGCGCGCGC GCGCGCGGGGCACCTGCAGGTATTGGACGCCGGGAACTCGGGTGGCATGAGCCTCTGGGT GGACAAATATCGGCCCTGCTCCTTGGGGCAGCTGGACTATCACAAAGAGCAGGCGGCCCA GCTGCGCAACTTGGTGCAATGTGGTGACTTTCCTCATTTATTAGTGTATGGACCATCAGG TGCGGGAAAAAAGACAAGAATTATGTGTATTCTACGTGAACTGTATGGTGTTGGCGTGGA AAAATTGAGAATTGAACATCAGACCATCACAACTCCATCTAAAAAGAAAATTGAAATCAG CACTATCGCAAGCAATTACCACCTTGAAGTCAATCCCAGTGATGCTGGAAATAGTGACCG GGTAGTAATTCAGGAGATGTTAAAAACAGTGGCGCAATCACAGCAACTTGAAACAAGCTC TCAAAAAGATTTTAAAGTGGTATTATTGACAGAGGTTGACAAACTCACTAAGGATGCTCA GCATGCCTTGCGCAGAACCATGGAAAAATATATGTCCACCTGCAGATTGATCTTGTGTTG CAATTCTACATCCAAAGTGATACCACCTATTCGTAGTCGGTGTCTAGCAGTTCGTGTGCC AGCTCCCAGCATTGAAGATATTTGCCATGTGTTGTCTACTGTGTGTAAGAAGGAAGGTCT GAGTCTTCCGTCACAGCTGGCTCGTAAACTTGCGGAGAAGTCCTGCAGAAATCTCAGAAA AGCCCTGCTTATGTGTGAAGCCTGCAGAGTACAACAGTATCCTTTTACGGTAGATCAAGA AATCCCTGAAACTGACTGGGAGGTGTATCTGAGGGAGACTGCCAATGCTATTGTCAGTCA GCAGACTCCACAAAGGCTCCTTGAAGTTCGTGGAAGACTCTATGAGCTTCTAACTCATTG TATTCCTCCTGAAATAATAATGAAGGGCCTTCTCTCAGAACTTTTACATAATTGTGACGG ACAGCTGAAAGGGGAGGTGGCCCAGATGGCAGCTTACTACGAACATCGCCTACAACTTGG TAGCAAAGCCATTTATCACTTGGAAGCTTTTGTGGCGAAATTCATGGCGCTTTATAAGAA GTTCATGGAGGATGGATTGGAAGGCATGATATTTTGACATCTGTCAGTGATTCTTCCTAA TATTTCTCAGTATCAGCATTTATATTCAATTTAATTTGGAAGATCTGCAGGTAAAATAAA CTAACTTTACTTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCACGAGATTTGGAGCTCGCGGGAAAACTTGTATGTGCATCTGGGCTGAGGGCGCGCGC GCGCGCGGGGCACCTGCAGGTATTGGACGCCGGGAACTCGGGTGGCATGAGCCTCTGGGT GGACAAATATCGGCCCTGCTCCTTGGGGCAGCTGGACTATCACAAAGAGCAGGCGGCCCA GCTGCGCAACTTGGTGCAATGTGGTGACTTTCCTCATTTATTAGTGTATGGACCATCAGG TGCGGGAAAAAAGACAAGAATTATGTGTATTCTACGTGAACTGTATGGTGTTGGCGTGGA AAAATTGAGAATTGAACATCAGACCATCACAACTCCATCTAAAAAGAAAATTGAAATCAG CACTATCGCAAGCAATTACCACCTTGAAGTCAATCCCAGTGATGCTGGAAATAGTGACCG GGTAGTAATTCAGGAGATGTTAAAAACAGTGGCGCAATCACAGCAACTTGAAACAAGCTC TCAAAAAGATTTTAAAGTGGTATTATTGACAGAGGTTGACAAACTCACTAAGGATGCTCA GCATGCCTTGCGCAGAACCATGGAAAAATATATGTCCACCTGCAGATTGATCTTGTGTTG CAATTCTACATCCAAAGTGATACCACCTATTCGTAGTCGGTGTCTAGCAGTTCGTGTGCC AGCTCCCAGCATTGAAGATATTTGCCATGTGTTGTCTACTGTGTGTAAGAAGGAAGGTCT GAGTCTTCCGTCACAGCTGGCTCGTAAACTTGCGGAGAAGTCCTGCAGAAATCTCAGAAA AGCCCTGCTTATGTGTGAAGCCTGCAGAGTACAACAGTATCCTTTTACGGTAGATCAAGA AATCCCTGAAACTGACTGGGAGGTGTATCTGAGGGAGACTGCCAATGCTATTGTCAGTCA GCAGACTCCACAAAGGCTCCTTGAAGTTCGTGGAAGACTCTATGAGCTTCTAACTCATTG TATTCCTCCTGAAATAATAATGAAGGGCCTTCTCTCAGAACTTTTACATAATTGTGACGG ACAGCTGAAAGGGGAGGTGGCCCAGATGGCAGCTTACTACGAACATCGCCTACAACTTGG TAGCAAAGCCATTTATCACTTGGAAGCTTTTGTGGCGAAATTCATGGCGCTTTATAAGAA GTTCATGGAGGATGGATTGGAAGGCATGATATTTTGACATCTGTCAGTGATTCTTCCTAA TATTTCTCAGTATCAGCATTTATATTCAATTTAATTTGGAAGATCTGCAGGTAAAATAAA CTAACTTTACTTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-196, gnl|bosTau2|chr12 (14577331-14577141) | |
| 1-196, gnl|Hg17|chr13 (33290212-33290405) | |
| 1-196, gnl|Mm7|chr5 (150586866-150586702) | |
| 496-690, gnl|bosTau2|chr12 (14567622-14567428) | |
| 496-690, gnl|canFam2|chr25 (9461446-9461627) | |
| 496-690, gnl|danRer3|chr10 (27753000-27753180) | |
| 496-690, gnl|dasNov1|scaffold_81157 (3679-3505) | |
| 496-690, gnl|echTel1|scaffold_115736 (589-398) | |
| 496-690, gnl|fr1|chrUn (308216189-308216370) | |
| 496-690, gnl|galGal2|chr1 (165937780-165937962) | |
| 496-690, gnl|Hg17|chr13 (33301971-33302165) | |
| 496-690, gnl|hg17|chr3 (36186378-36186560) | |
| 496-690, gnl|loxAfr1|scaffold_3748 (69637-69454) | |
| 496-690, gnl|mm7|chr5 (150581158-150581340) | |
| 496-690, gnl|Mm7|chr5 (150581340-150581146) | |
| 496-690, gnl|monDom2|scaffold_15 (44742409-44742227) | |
| 496-690, gnl|oryCun1|scaffold_203428 (14919-15077) | |
| 496-690, gnl|panTro1|chr2 (37290286-37290468) | |
| 496-690, gnl|rheMac2|chr2 (178581780-178581947) | |
| 496-690, gnl|rn3|chr12 (3229779-3229961) | |
| 496-690, gnl|tetNig1|chr7 (2477514-2477694) | |
| 496-690, gnl|xenTro1|scaffold_384 (709192-709374) | |
| 984-1274, gnl|bosTau2|chr12 (14560525-14560235) | |
| 984-1274, gnl|Hg17|chr13 (33308239-33308524) | |
| 984-1274, gnl|Mm7|chr5 (150578744-150578463) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-196, gnl|bosTau2|chr12 (14577331-14577141) | |
| 1-196, gnl|Hg17|chr13 (33290212-33290405) | |
| 1-196, gnl|Mm7|chr5 (150586866-150586702) | |
| 496-690, gnl|bosTau2|chr12 (14567622-14567428) | |
| 496-690, gnl|canFam2|chr25 (9461446-9461627) | |
| 496-690, gnl|danRer3|chr10 (27753000-27753180) | |
| 496-690, gnl|dasNov1|scaffold_81157 (3679-3505) | |
| 496-690, gnl|echTel1|scaffold_115736 (589-398) | |
| 496-690, gnl|fr1|chrUn (308216189-308216370) | |
| 496-690, gnl|galGal2|chr1 (165937780-165937962) | |
| 496-690, gnl|Hg17|chr13 (33301971-33302165) | |
| 496-690, gnl|hg17|chr3 (36186378-36186560) | |
| 496-690, gnl|loxAfr1|scaffold_3748 (69637-69454) | |
| 496-690, gnl|mm7|chr5 (150581158-150581340) | |
| 496-690, gnl|Mm7|chr5 (150581340-150581146) | |
| 496-690, gnl|monDom2|scaffold_15 (44742409-44742227) | |
| 496-690, gnl|oryCun1|scaffold_203428 (14919-15077) | |
| 496-690, gnl|panTro1|chr2 (37290286-37290468) | |
| 496-690, gnl|rheMac2|chr2 (178581780-178581947) | |
| 496-690, gnl|rn3|chr12 (3229779-3229961) | |
| 496-690, gnl|tetNig1|chr7 (2477514-2477694) | |
| 496-690, gnl|xenTro1|scaffold_384 (709192-709374) | |
| 984-1274, gnl|bosTau2|chr12 (14560525-14560235) | |
| 984-1274, gnl|Hg17|chr13 (33308239-33308524) | |
| 984-1274, gnl|Mm7|chr5 (150578744-150578463) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| cte (0.58548) | |
| cmu (0.372787) | |
| ova (0.258264) | |
| cbe (0.239234) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| fty (0.17584) | |
| ski (0.146735) | |
| spl (0.143184) | |
| ste (0.135208) | |
| bla (0.124347) | |
| cty (0.10408) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.58548) | |
| cmu (0.372787) | |
| ova (0.258264) | |
| cbe (0.239234) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| fty (0.17584) | |
| ski (0.146735) | |
| spl (0.143184) | |
| ste (0.135208) | |
| bla (0.124347) | |
| cty (0.10408) |