Non-Coding RNA Search

Ss1.1-Tra1-TCH01C090026.5

Sequence:


               
               ACTGCCTGTGGGACCCCGGGCCGCGGCGGCGCGGGTGCTGCAGGTCCAGGGCCGCTGGGA
AGTTGTGCGTGAGGACCTCCGCGGCGCCGGGGCGGGGTGAGCCGGGCCGGGCTCCGAGAG
CGCGGCGCCCGCTGAAGCGAGCTGGGAGGCTCGAGGGGCTGGCGGGCACTGTGTAATGTT
CAAGCTCAGAAATGCCTTATGTGGATCGTCAGAATCGCATTTGTGGTTTTCTAGACATTG
AAGAAAATGAAAACAGTGGGAAATTTCTTCGGAGGTATTTCATACTGGATACCAGAGAAG
ATAGCTTTGTATGGTACATGGATAATCCACAGAACCTGCCTTCTGGATCATCACGCGTTG
GAGCCATTAAACTTACCTACATTTCAAAGGTTAGCGATGCAACTAAGCTAAGGCCAAAGG
CTGAGTTCTGTTTTGTTATGAATGCAGGGATGAGGAAGTACTTCCTACAAGCCAATGATC
AGCAGGACCTAGTAGAATGGGTCAATGTGTTGAACAAAGCTATAAAAATTACAGTACCAA
AGCAGTCAGACTCACAGCCTCATTCTGACAACCCAAGTCGCCAGGGCGAATGTGGGAAGA
AGCAAGTGTCTTACAGAACTGACATTGTTGGTGGTGTGCCCATCATCACCCCAACTCAGA
AAGAAGACGTAAATGAATGTGGTGAAAGTATTGACAGAAATAATCTGAAACGGTCCCAAA
GCCATCTTCCTTACTTTCCTCCGAAACCGCCCCCGGATAGTGCAGTTATCAAAGCTGGAT
ATTGTGTAAAACAAGGAGCAGTGATGAAAAACTGGAAGAGAAGATATTTTCAATTGGATG
AAAACACAATAGGCTACTTCAAATCTGAACTGGAAAAGGAACCTCTCCGCGTAATACCGC
TTAAAGAGGTTCATAAAGTCCAAGAATGTAAGCAAAGTGACATAATGATGAGGGACAACC
TCTTTGAAATTGTAACATCGTCTCGAACTTTCTATGTGCAGGCCGATAGCCCGGAAGAGA
TGCACAGCTGGATTAAAGCCGTCTCTGGCGCCATCGTAGCACAGCGGGGGCCCGGCAGAT
CCGCTTCCTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGCCTGTGGGACCCCGGGCCGCGGCGGCGCGGGTGCTGCAGGTCCAGGGCCGCTGGGA
AGTTGTGCGTGAGGACCTCCGCGGCGCCGGGGCGGGGTGAGCCGGGCCGGGCTCCGAGAG
CGCGGCGCCCGCTGAAGCGAGCTGGGAGGCTCGAGGGGCTGGCGGGCACTGTGTAATGTT
CAAGCTCAGAAATGCCTTATGTGGATCGTCAGAATCGCATTTGTGGTTTTCTAGACATTG
AAGAAAATGAAAACAGTGGGAAATTTCTTCGGAGGTATTTCATACTGGATACCAGAGAAG
ATAGCTTTGTATGGTACATGGATAATCCACAGAACCTGCCTTCTGGATCATCACGCGTTG
GAGCCATTAAACTTACCTACATTTCAAAGGTTAGCGATGCAACTAAGCTAAGGCCAAAGG
CTGAGTTCTGTTTTGTTATGAATGCAGGGATGAGGAAGTACTTCCTACAAGCCAATGATC
AGCAGGACCTAGTAGAATGGGTCAATGTGTTGAACAAAGCTATAAAAATTACAGTACCAA
AGCAGTCAGACTCACAGCCTCATTCTGACAACCCAAGTCGCCAGGGCGAATGTGGGAAGA
AGCAAGTGTCTTACAGAACTGACATTGTTGGTGGTGTGCCCATCATCACCCCAACTCAGA
AAGAAGACGTAAATGAATGTGGTGAAAGTATTGACAGAAATAATCTGAAACGGTCCCAAA
GCCATCTTCCTTACTTTCCTCCGAAACCGCCCCCGGATAGTGCAGTTATCAAAGCTGGAT
ATTGTGTAAAACAAGGAGCAGTGATGAAAAACTGGAAGAGAAGATATTTTCAATTGGATG
AAAACACAATAGGCTACTTCAAATCTGAACTGGAAAAGGAACCTCTCCGCGTAATACCGC
TTAAAGAGGTTCATAAAGTCCAAGAATGTAAGCAAAGTGACATAATGATGAGGGACAACC
TCTTTGAAATTGTAACATCGTCTCGAACTTTCTATGTGCAGGCCGATAGCCCGGAAGAGA
TGCACAGCTGGATTAAAGCCGTCTCTGGCGCCATCGTAGCACAGCGGGGGCCCGGCAGAT
CCGCTTCCTCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56207292|emb|CAI23596.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56207292|emb|CAI23596.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               585-694, - strand, RNAz p=0.913214

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               585-694, - strand, RNAz p=0.913214

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               14-162, gnl|bosTau2|chr26 (29504386-29504228)
               

               
               14-162, gnl|Hg17|chr10 (124124272-124124448)
               


               
               208-1023, gnl|bosTau2|chr20 (34894787-34895583)
               

               
               208-1023, gnl|Hg17|chr5 (14673147-14673984)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-162, gnl|bosTau2|chr26 (29504386-29504228)
               

               
               14-162, gnl|Hg17|chr10 (124124272-124124448)
               


               
               208-1023, gnl|bosTau2|chr20 (34894787-34895583)
               

               
               208-1023, gnl|Hg17|chr5 (14673147-14673984)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nlu (0.191681)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               pla (0.133672)
               

               
               ret (0.128733)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               pla (0.133672)
               

               
               ret (0.128733)

	14-162, gnl\|bosTau2\|chr26 (29504386-29504228)
	14-162, gnl\|Hg17\|chr10 (124124272-124124448)

	208-1023, gnl\|bosTau2\|chr20 (34894787-34895583)
	208-1023, gnl\|Hg17\|chr5 (14673147-14673984)

	nlu (0.191681)
	cje (0.165235)
	tbr (0.154178)
	pla (0.133672)
	ret (0.128733)