Ss1.1-Tra1-TCH01C100009.5
|
TTCTGCTGTCGCCGCCCGCCTGTGTCCGCCAGCGTCGCGCCGGGGCCCCGAGGAGCCGTT
GCGGGGGGTCCGGGCCAAGGCCCGCTCGTGTGGAGTTCGTCGCCGCAGCTGCCCACCCGC
TTGCCCATCAGTCTTCCCTCCCGACCGCCATCATGCTGGCGCTCATCTCCCGCCTGCTGG
ACTGGTTCCGCTCGCTCTTTTGGAAGGAGGAGATGGAGCTGACGCTCGTGGGGCTGCAGT
ACTCGGGCAAGACCACTTTCGTCAATGTCATCGCGTCAGGTCAGTTCAGTGAAGATATGA
TACCCACAGTGGGCTTCAACATGAGGAAAGTAACTAAAGGTAACGTCACAATAAAGATTT
GGGACATAGGAGGACAACCCCGCTTCCGGAGCATGTGGGAACGGTACTGCAGAGGAGTCA
ACGCTATTGTTTACATGATAGATGCTGCAGATCGTGAAAAGATAGAAGCTTCTCGAAATG
AACTACATAATCTTCTAGATAAACCACAGTTACAAGGAATTCCAGTGCTAGTACTTGGAA
ATAAGAGAGATCTTCCTAATGCCTTGGATGAGAAACAGCTAATTGAAAAAATGAATCTGT
CTGCTATTCAGGATAGAGAAATTTGCTGCTATTCAATTTCCTGCAAAGAAAAGGATAATA
TAGATATCACCCTTCAGTGGCTTATTCAACATTCAAAATCCAGAAGAAGCTGAAGCATCT
CCTGAAGTCTTCCAGTCCTTCCTGGCTATCATCCTAGAATTATTGTCAGTTCCTCTGAAG
TACTTCCCAGAATACGGTCCTTCCTAAACCCAAGAAATTGCCTTTTTCAGAGTTTTATTT
CTCATGTGCACTGCTGAAGATGTGTATTCCTAATCCTTCATAAAGAATCATCTAGAGTTG
TCATGATAAAGTCAGCACACTCAAAAAGGCTTCTTATACATACTTGTCTTAAACAGTGTG
TAGAGCTTTTTCTAAAAAACACACTTTGACCATCTTAAGTCAAGAAAATTGCATATTTCT
GTTCTGGTCTTTCTGGGCCAGGTTTTTATATTGGTTTTCAGTAAATGTCTATCTATGATA
TTTCATTATAGAGTCCAGTAGCTTAATACTGATACTGACTTGATACAGCATGAAGTTTCT
AGTGCCACACAGTATTTAGAAAATCTTTAGCCTGACTCGTGGGATATAAACATAATGTTG
ACACATCTCACAAATGCATGTGAAATGTATAATTACACCTTAGGAATTTAAAAATTGGTC
TGCAGAGAGTGAGCAGAGGCACCAGATCAGTGTTGGTGTTGGTTCTTTACACTGGTGAGA
TCTTACATGATGAATTTTGAAAACATTCTGCTTTCTGAGGATTCTTCATCTTCCAGATAG
CAGCCGGGATATGGGAGGAACTGAGACATGCTGTTTTGTATCTGTCCAGATCATTACTTC
TCTCTTTTTTCTTCTTTTGTTTTTCCTGGTTCAACACACTTTTTAAAGGGGTTGGGAATT
GAAGCTTCATTTTCTCAAAAGCTTTCATGAATTTAGAGCATTCCAGCCAATGTAATAAAA
TGTGTTCAGACTGTCAGACTCTTCAAACACCTGTTTGTTCTTTCTGTCTCTGGTCATTAA
ACCAGTGCTGCTGCATGACACTCTAACTCTTGACTTTTTATATCTAGTCATAAAGTTGAC
TTTCAGCACAATAGATACTTGCAAATAAAAATTCTTATTTTTCTCTCTTATTGATGTAAG
GTTGACACTCTTTTGTCCGATGCCATTAGACATCTTGATTATTGTGACAACTCTAGACCT
GCCTGCTTTCCCTGATGTAATCATGCACAACGTCTGCAGGTCGTCGAATAATCACAGAGA
ACTGAGGAAGTGATGCTGTCTCTTGTTTGCTTCCATGATACGGAGATGTATGAAAACTTA
AATGAACATGTTTGTAGTTTAGTAATTTTCATATACATAGAGGGACATATTAATACTGGT
TCACATGTAAATTGTTACTCCCATAGACCACTGTAGTAGGTAAACTCTATGGTACACGCG
CTTATGTGTTGCCTCACACTGTGTGTGATTTTGTTTCTTTTGTTAAGCAGCACTCATGTA
AACAGTGCATTTCCAAACGTGTTGAGCACTCAAAGTGCAGTCGACATGAAGTTTTTTTTA
ATTTATAGACTGCCATGGCCTTAACAATATTCTGTACAAAATACTGCACCGTGTTGCACA
GACACTACTTGCTTTTCTCCATTCACATTTTTATGAGTAGAATCTCAGCTTTTAAAATTC
TGTTCTTACTCTTTGAAGCATGTTGCATACTTCCCTGATAGGATGGATGGTTCTGTAAAT
GAAGGGGTATTTATACTTGCTTCTGTACTTCAACACCATTAATGGTCACTGTGAACCATT
ACAAAGAATGTGGCAGTTTGCTTGTGCCTAAAAGAAGGAATCAGAACTAAAATATGTGAC
CATGTGGGGACCGCATAGGTTCGTTAATTGACCGAAGCTAAACCGTAATGTGTTTGTGTG
TCTGCTCATTGCTTCCAGCATTTCAAGACAGCTAAACACTACTATCAACGTTTTCCTGTG
CATTAACCTCTGCATGTGAAACTTAACAGTTACTGAACTTTGTAAATACGTAAATTTTTT
TATTTAGGTGGATGCATCTTTCTGTCTGTTGACTGCTCTTCTCAGTTTTATTCAATAAAC
TTGCATTTTGAGGGTTGTATTGACAGTTTTAACTTAAAATATGCACCATGATGGAAGGTG
CTGATTTTTTTGGAAGGAGGTGGAAAGAAAGTTACCATGAGCAGGGTCTGTAGACAATGT
GCTGGAAGGAAATCAGCTCAGCTCCCAAAGAATTGGGTCTGTGGGCTAGTTAAAGTAGAA
ATAAACTTTAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTCTGCTGTCGCCGCCCGCCTGTGTCCGCCAGCGTCGCGCCGGGGCCCCGAGGAGCCGTT
GCGGGGGGTCCGGGCCAAGGCCCGCTCGTGTGGAGTTCGTCGCCGCAGCTGCCCACCCGC
TTGCCCATCAGTCTTCCCTCCCGACCGCCATCATGCTGGCGCTCATCTCCCGCCTGCTGG
ACTGGTTCCGCTCGCTCTTTTGGAAGGAGGAGATGGAGCTGACGCTCGTGGGGCTGCAGT
ACTCGGGCAAGACCACTTTCGTCAATGTCATCGCGTCAGGTCAGTTCAGTGAAGATATGA
TACCCACAGTGGGCTTCAACATGAGGAAAGTAACTAAAGGTAACGTCACAATAAAGATTT
GGGACATAGGAGGACAACCCCGCTTCCGGAGCATGTGGGAACGGTACTGCAGAGGAGTCA
ACGCTATTGTTTACATGATAGATGCTGCAGATCGTGAAAAGATAGAAGCTTCTCGAAATG
AACTACATAATCTTCTAGATAAACCACAGTTACAAGGAATTCCAGTGCTAGTACTTGGAA
ATAAGAGAGATCTTCCTAATGCCTTGGATGAGAAACAGCTAATTGAAAAAATGAATCTGT
CTGCTATTCAGGATAGAGAAATTTGCTGCTATTCAATTTCCTGCAAAGAAAAGGATAATA
TAGATATCACCCTTCAGTGGCTTATTCAACATTCAAAATCCAGAAGAAGCTGAAGCATCT
CCTGAAGTCTTCCAGTCCTTCCTGGCTATCATCCTAGAATTATTGTCAGTTCCTCTGAAG
TACTTCCCAGAATACGGTCCTTCCTAAACCCAAGAAATTGCCTTTTTCAGAGTTTTATTT
CTCATGTGCACTGCTGAAGATGTGTATTCCTAATCCTTCATAAAGAATCATCTAGAGTTG
TCATGATAAAGTCAGCACACTCAAAAAGGCTTCTTATACATACTTGTCTTAAACAGTGTG
TAGAGCTTTTTCTAAAAAACACACTTTGACCATCTTAAGTCAAGAAAATTGCATATTTCT
GTTCTGGTCTTTCTGGGCCAGGTTTTTATATTGGTTTTCAGTAAATGTCTATCTATGATA
TTTCATTATAGAGTCCAGTAGCTTAATACTGATACTGACTTGATACAGCATGAAGTTTCT
AGTGCCACACAGTATTTAGAAAATCTTTAGCCTGACTCGTGGGATATAAACATAATGTTG
ACACATCTCACAAATGCATGTGAAATGTATAATTACACCTTAGGAATTTAAAAATTGGTC
TGCAGAGAGTGAGCAGAGGCACCAGATCAGTGTTGGTGTTGGTTCTTTACACTGGTGAGA
TCTTACATGATGAATTTTGAAAACATTCTGCTTTCTGAGGATTCTTCATCTTCCAGATAG
CAGCCGGGATATGGGAGGAACTGAGACATGCTGTTTTGTATCTGTCCAGATCATTACTTC
TCTCTTTTTTCTTCTTTTGTTTTTCCTGGTTCAACACACTTTTTAAAGGGGTTGGGAATT
GAAGCTTCATTTTCTCAAAAGCTTTCATGAATTTAGAGCATTCCAGCCAATGTAATAAAA
TGTGTTCAGACTGTCAGACTCTTCAAACACCTGTTTGTTCTTTCTGTCTCTGGTCATTAA
ACCAGTGCTGCTGCATGACACTCTAACTCTTGACTTTTTATATCTAGTCATAAAGTTGAC
TTTCAGCACAATAGATACTTGCAAATAAAAATTCTTATTTTTCTCTCTTATTGATGTAAG
GTTGACACTCTTTTGTCCGATGCCATTAGACATCTTGATTATTGTGACAACTCTAGACCT
GCCTGCTTTCCCTGATGTAATCATGCACAACGTCTGCAGGTCGTCGAATAATCACAGAGA
ACTGAGGAAGTGATGCTGTCTCTTGTTTGCTTCCATGATACGGAGATGTATGAAAACTTA
AATGAACATGTTTGTAGTTTAGTAATTTTCATATACATAGAGGGACATATTAATACTGGT
TCACATGTAAATTGTTACTCCCATAGACCACTGTAGTAGGTAAACTCTATGGTACACGCG
CTTATGTGTTGCCTCACACTGTGTGTGATTTTGTTTCTTTTGTTAAGCAGCACTCATGTA
AACAGTGCATTTCCAAACGTGTTGAGCACTCAAAGTGCAGTCGACATGAAGTTTTTTTTA
ATTTATAGACTGCCATGGCCTTAACAATATTCTGTACAAAATACTGCACCGTGTTGCACA
GACACTACTTGCTTTTCTCCATTCACATTTTTATGAGTAGAATCTCAGCTTTTAAAATTC
TGTTCTTACTCTTTGAAGCATGTTGCATACTTCCCTGATAGGATGGATGGTTCTGTAAAT
GAAGGGGTATTTATACTTGCTTCTGTACTTCAACACCATTAATGGTCACTGTGAACCATT
ACAAAGAATGTGGCAGTTTGCTTGTGCCTAAAAGAAGGAATCAGAACTAAAATATGTGAC
CATGTGGGGACCGCATAGGTTCGTTAATTGACCGAAGCTAAACCGTAATGTGTTTGTGTG
TCTGCTCATTGCTTCCAGCATTTCAAGACAGCTAAACACTACTATCAACGTTTTCCTGTG
CATTAACCTCTGCATGTGAAACTTAACAGTTACTGAACTTTGTAAATACGTAAATTTTTT
TATTTAGGTGGATGCATCTTTCTGTCTGTTGACTGCTCTTCTCAGTTTTATTCAATAAAC
TTGCATTTTGAGGGTTGTATTGACAGTTTTAACTTAAAATATGCACCATGATGGAAGGTG
CTGATTTTTTTGGAAGGAGGTGGAAAGAAAGTTACCATGAGCAGGGTCTGTAGACAATGT
GCTGGAAGGAAATCAGCTCAGCTCCCAAAGAATTGGGTCTGTGGGCTAGTTAAAGTAGAA
ATAAACTTTAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
5-275, gnl|bosTau2|chr22 (18305084-18305360) |
|
5-275, gnl|Hg17|chr3 (5139005-5139273) |
|
5-275, gnl|Mm7|chr6 (108877146-108877415) |
| |
|
534-711, gnl|bosTau2|chr21 (12365507-12365681) |
|
534-711, gnl|canFam2|chr3 (56405498-56405328) |
|
534-711, gnl|dasNov1|scaffold_104314 (3156-2951) |
|
534-711, gnl|echTel1|scaffold_311481 (47303-47137) |
|
534-711, gnl|hg17|chr15 (89013351-89013541) |
|
534-711, gnl|Hg17|chr15 (89013507-89013354) |
|
534-711, gnl|mm7|chr7 (76442400-76442251) |
|
534-711, gnl|oryCun1|scaffold_133299 (9222-9022) |
|
534-711, gnl|panTro1|chr16 (89957537-89957727) |
|
534-711, gnl|rheMac2|chr7 (70383093-70383281) |
|
534-711, gnl|rn3|chr1 (136823002-136822857) |
| |
|
2257-2739, gnl|bosTau2|chr8 (24341570-24342051) |
|
2257-2739, gnl|Hg17|chr3 (5196979-5197454) |
|
2257-2739, gnl|Mm7|chr6 (108917134-108917608) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
5-275, gnl|bosTau2|chr22 (18305084-18305360) |
|
5-275, gnl|Hg17|chr3 (5139005-5139273) |
|
5-275, gnl|Mm7|chr6 (108877146-108877415) |
| |
|
534-711, gnl|bosTau2|chr21 (12365507-12365681) |
|
534-711, gnl|canFam2|chr3 (56405498-56405328) |
|
534-711, gnl|dasNov1|scaffold_104314 (3156-2951) |
|
534-711, gnl|echTel1|scaffold_311481 (47303-47137) |
|
534-711, gnl|hg17|chr15 (89013351-89013541) |
|
534-711, gnl|Hg17|chr15 (89013507-89013354) |
|
534-711, gnl|mm7|chr7 (76442400-76442251) |
|
534-711, gnl|oryCun1|scaffold_133299 (9222-9022) |
|
534-711, gnl|panTro1|chr16 (89957537-89957727) |
|
534-711, gnl|rheMac2|chr7 (70383093-70383281) |
|
534-711, gnl|rn3|chr1 (136823002-136822857) |
| |
|
2257-2739, gnl|bosTau2|chr8 (24341570-24342051) |
|
2257-2739, gnl|Hg17|chr3 (5196979-5197454) |
|
2257-2739, gnl|Mm7|chr6 (108917134-108917608) |
|
cbe (0.956938) |
|
mgp (0.922722) |
|
liv (0.877706) |
|
aor (0.781097) |
|
mgm (0.721371) |
|
clu (0.598229) |
|
fat (0.58971) |
|
cbl (0.573987) |
|
sug (0.509165) |
|
spc (0.453463) |
|
hyp (0.42851) |
|
amn (0.417711) |
|
cty (0.41632) |
|
kid (0.389206) |
|
fty (0.351679) |
|
nco (0.323468) |
|
fco (0.314416) |
|
sme (0.305437) |
|
lun (0.300978) |
|
isp (0.300752) |
|
cte (0.29274) |
|
lin (0.291206) |
|
lnt (0.284616) |
|
csk (0.281492) |
|
ste (0.270416) |
|
pla (0.267344) |
|
lyg (0.266205) |
|
ute (0.265569) |
|
thg (0.253582) |
|
bla (0.248694) |
|
tra (0.246184) |
|
ece (0.229305) |
|
mas (0.210305) |
|
tes (0.207814) |
|
ldo (0.194005) |
|
gul (0.177588) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cli (0.152812) |
|
cag (0.151194) |
|
ski (0.146735) |
|
spl (0.143184) |
|
ssp (0.13552) |
|
cov (0.132153) |
|
ova (0.129132) |
|
ret (0.128733) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
med (0.116252) |
|
jca (0.11396) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
cbe (0.956938) |
|
mgp (0.922722) |
|
liv (0.877706) |
|
aor (0.781097) |
|
mgm (0.721371) |
|
clu (0.598229) |
|
fat (0.58971) |
|
cbl (0.573987) |
|
sug (0.509165) |
|
spc (0.453463) |
|
hyp (0.42851) |
|
amn (0.417711) |
|
cty (0.41632) |
|
kid (0.389206) |
|
fty (0.351679) |
|
nco (0.323468) |
|
fco (0.314416) |
|
sme (0.305437) |
|
lun (0.300978) |
|
isp (0.300752) |
|
cte (0.29274) |
|
lin (0.291206) |
|
lnt (0.284616) |
|
csk (0.281492) |
|
ste (0.270416) |
|
pla (0.267344) |
|
lyg (0.266205) |
|
ute (0.265569) |
|
thg (0.253582) |
|
bla (0.248694) |
|
tra (0.246184) |
|
ece (0.229305) |
|
mas (0.210305) |
|
tes (0.207814) |
|
ldo (0.194005) |
|
gul (0.177588) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cli (0.152812) |
|
cag (0.151194) |
|
ski (0.146735) |
|
spl (0.143184) |
|
ssp (0.13552) |
|
cov (0.132153) |
|
ova (0.129132) |
|
ret (0.128733) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
med (0.116252) |
|
jca (0.11396) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
eje (0.0988338) |
