Non-Coding RNA Search

Ss1.1-Tra1-TCH01C100064.5

Sequence:


               
               GGAGATTCTTCTGACACGGTTTCCTAAATATTAATGGCCCGAGCTGAGAAAACACTTCGG
AGCCTTTCCCTTAATGGGAAATAAAGATACTGGGTTGGGGAGAAAATGATTAGGTGACTT
ATCATAATGTGGCTGAGAAATGCCTCCCGGAGAAGACATTCTAACAGTTTATGGTCCCTG
ATGTAACAAAGTCAGCATTTCCCCTCTCATAAGCCTATTCTTTCCTGAAAACATTGCCTA
CTTCCTGTCGGCCCAATTATAGGCTTTATCAGCATCACTAGCCCAGGCAGAGTAGATCTC
AGTGATCTCCCAAACTCAGGGGAAAGCACCCTCAAGTCCCTCTCTTGGGAGTGGAAAGAT
CCAGCCTGCACTGCTGTGTGCTTTTTTTTCTCAGAGCTGTACCAATCCTTAGGTGGCTAA
GAATTCATATGTGTAGTTTTCTTTGCATCCTTAAATGCTGTCCTGGGCACTGATTCCTAG
TTTGAATTACGCGAATCATGGGAAGTTGCCCTGTGAAGTATTTGAATAGTTTGGACCTGA
GATGCTTAATCCTAATAAAATAATTTCCCAGTTTGTCCTAGCAAGTGCTTACTGTTCTAT
AAACTGGTTCTAAAATTATCACTGTGGAGTAGCATTACTGGCGTGTTTATTTCACATGAG
CTTTTGTTTTTTTCCTTTGAGGTAATGGCACCATTGACTTCCCAGAATTTTTGACTATGA
TGGCTAGGAAAATGAAAGACACAGACAGCGAAGAAGAAATCCGCGAGGCATTCCGAGTCT
TTGACAAGGTAAGCCTGCTGCCTCTGCATTGCAGACTCTCCTTAAATATGGCTCTTTTTG
GCTATCGTTTCTAAAAGCTTTAACATTCTGTTCCAGTTAGAACACTTACCTAACTGCCTA
AGCCTCTGTAATCTCACTTTCAAATGCAGTAACCTTATCAGATGAGACTAAGCATAATAA
ATAGTAGAGAAGTTTTGAACCAAATTTCTTGATTGTTACTTTCAATTTCCGTTCCTTTTA
AAAAGCCCCTGTATTTTCTGCGTTGGCTGCCTTGCATGTATGTAGTAGGTAGAGGTGGGA
ACTGGAGACTGGAGAATTGTCGACCTACACAGGGTGGTCAGTAACTTGAGGGCCGTAACG
ACGTCGTGGCTGACTTGCCCGCACCCAGCTGCTGCGAGTCCCTGTCGGTAACCTCTGCTG
GATGTTCACAGGATGGCAATGGCTACATCAGTGCTGCAGAACTACGTCACGTCATGACAA
ACTTAGGAGAAAAACTAACAGACGAAGAAGTAGATGAAATGATCAGAGAAGCAGATATTG
ATGGAGATGGACAAGTCAACTACGAAGGTAATAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGATTCTTCTGACACGGTTTCCTAAATATTAATGGCCCGAGCTGAGAAAACACTTCGG
AGCCTTTCCCTTAATGGGAAATAAAGATACTGGGTTGGGGAGAAAATGATTAGGTGACTT
ATCATAATGTGGCTGAGAAATGCCTCCCGGAGAAGACATTCTAACAGTTTATGGTCCCTG
ATGTAACAAAGTCAGCATTTCCCCTCTCATAAGCCTATTCTTTCCTGAAAACATTGCCTA
CTTCCTGTCGGCCCAATTATAGGCTTTATCAGCATCACTAGCCCAGGCAGAGTAGATCTC
AGTGATCTCCCAAACTCAGGGGAAAGCACCCTCAAGTCCCTCTCTTGGGAGTGGAAAGAT
CCAGCCTGCACTGCTGTGTGCTTTTTTTTCTCAGAGCTGTACCAATCCTTAGGTGGCTAA
GAATTCATATGTGTAGTTTTCTTTGCATCCTTAAATGCTGTCCTGGGCACTGATTCCTAG
TTTGAATTACGCGAATCATGGGAAGTTGCCCTGTGAAGTATTTGAATAGTTTGGACCTGA
GATGCTTAATCCTAATAAAATAATTTCCCAGTTTGTCCTAGCAAGTGCTTACTGTTCTAT
AAACTGGTTCTAAAATTATCACTGTGGAGTAGCATTACTGGCGTGTTTATTTCACATGAG
CTTTTGTTTTTTTCCTTTGAGGTAATGGCACCATTGACTTCCCAGAATTTTTGACTATGA
TGGCTAGGAAAATGAAAGACACAGACAGCGAAGAAGAAATCCGCGAGGCATTCCGAGTCT
TTGACAAGGTAAGCCTGCTGCCTCTGCATTGCAGACTCTCCTTAAATATGGCTCTTTTTG
GCTATCGTTTCTAAAAGCTTTAACATTCTGTTCCAGTTAGAACACTTACCTAACTGCCTA
AGCCTCTGTAATCTCACTTTCAAATGCAGTAACCTTATCAGATGAGACTAAGCATAATAA
ATAGTAGAGAAGTTTTGAACCAAATTTCTTGATTGTTACTTTCAATTTCCGTTCCTTTTA
AAAAGCCCCTGTATTTTCTGCGTTGGCTGCCTTGCATGTATGTAGTAGGTAGAGGTGGGA
ACTGGAGACTGGAGAATTGTCGACCTACACAGGGTGGTCAGTAACTTGAGGGCCGTAACG
ACGTCGTGGCTGACTTGCCCGCACCCAGCTGCTGCGAGTCCCTGTCGGTAACCTCTGCTG
GATGTTCACAGGATGGCAATGGCTACATCAGTGCTGCAGAACTACGTCACGTCATGACAA
ACTTAGGAGAAAAACTAACAGACGAAGAAGTAGATGAAATGATCAGAGAAGCAGATATTG
ATGGAGATGGACAAGTCAACTACGAAGGTAATAGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47209086|emb|CAF91543.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47209086|emb|CAF91543.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               408-527, - strand, RNAz p=0.75755

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               408-527, - strand, RNAz p=0.75755

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               3-817, gnl|bosTau2|chr10 (69308224-69307425)
               

               
               3-817, gnl|Hg17|chr14 (89939265-89940108)
               

               
               3-817, gnl|Mm7|chr12 (97700322-97701112)
               


               
               834-1092, gnl|bosTau2|chr10 (69307426-69307160)
               

               
               834-1092, gnl|Hg17|chr14 (89940107-89940365)
               


               
               1178-1349, gnl|bosTau2|chr10 (69307105-69306934)
               

               
               1178-1349, gnl|Hg17|chr14 (89940442-89940613)
               

               
               1178-1349, gnl|Mm7|chr12 (97701424-97701587)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-817, gnl|bosTau2|chr10 (69308224-69307425)
               

               
               3-817, gnl|Hg17|chr14 (89939265-89940108)
               

               
               3-817, gnl|Mm7|chr12 (97700322-97701112)
               


               
               834-1092, gnl|bosTau2|chr10 (69307426-69307160)
               

               
               834-1092, gnl|Hg17|chr14 (89940107-89940365)
               


               
               1178-1349, gnl|bosTau2|chr10 (69307105-69306934)
               

               
               1178-1349, gnl|Hg17|chr14 (89940442-89940613)
               

               
               1178-1349, gnl|Mm7|chr12 (97701424-97701587)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               che (0.136314)
               

               
               kid (0.129735)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               che (0.136314)
               

               
               kid (0.129735)

	3-817, gnl\|bosTau2\|chr10 (69308224-69307425)
	3-817, gnl\|Hg17\|chr14 (89939265-89940108)
	3-817, gnl\|Mm7\|chr12 (97700322-97701112)

	834-1092, gnl\|bosTau2\|chr10 (69307426-69307160)
	834-1092, gnl\|Hg17\|chr14 (89940107-89940365)

	1178-1349, gnl\|bosTau2\|chr10 (69307105-69306934)
	1178-1349, gnl\|Hg17\|chr14 (89940442-89940613)
	1178-1349, gnl\|Mm7\|chr12 (97701424-97701587)

	lyg (0.266205)
	bla (0.248694)
	cbe (0.239234)
	fat (0.147427)
	liv (0.146284)
	che (0.136314)
	kid (0.129735)