Ss1.1-Tra1-TCH01C100070.5
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CGCGAGCGAGGGACGCGGGGTGCTCAGAGCGCGGCCTGCTGGGTCCAACGCACTGACGCC
GCGGCCAGGGGCGCGGTCACCGGCGCCACCAAGGTTTGCTCTGTCCCCTCCGAGGACCTC
GATTCTGGCTCGCAGGATCTGCTTCCCTGTTCCCGCGAGGCAGCGCGTTGGTCGCGGCTC
TCTTTGGCTGCTGGTTGCTCCTGGGCGGAGCCCGCCCCGCGGTGGCTGGCCGGGTCAACC
CGGTCGGCCCGCAAGGTGCCCTGTGTCCCAGGCCCATCAAAGGAGAGGTGCAACAAGAAT
ACTTTGCCTGATAGGAACCTAGGGTGCTGCGTTGGAGGTGTGCAACGGAGGCTGGTTGTG
GGTCAGAAGGAAAAGAGGACCCAGCTCTTCCTCCATTCAGCTCTGGTTCTCCATCAGCCC
CAGAGGGGCTGCCACTGCCCAGTCACCACCTGACCCTGGAAGGGGGATCGGCGTGGGAGA
CATCCCCAAAGCTTCTGGAAACAAGACTGTGGTACAGTCCTCAATGAGCCGGTCCCAGGT
AGCCCTGCTGGGCCTGGGCCTGCTGCTTATGCTGCTACTGTATGTGGGGCTTCCAGGACC
ATCTGAGCAGACCTCCTGGCTCTGGGGAGATCCCAATATCACGATCCTGGCTGGTCTCAC
CCCTGGCGACTCCCCCCTTTTTTACCGCGAGGTGCTCCCCCTCCACCGGGCCCGCAGGGT
GGATGTGGTGCTGCTCCATGGAAAGGCCTTTAACTCCCACACGTGGGAGCAGCTGGGCAC
GCTGCAACTGCTGGCGCAGAGGGGCTACCGGGCCGTGGCCCTTGACCTCCCAGGTTTTGG
GAATTCGGCACCTTCAAAGGAGGCAAGCACAGAGGCGGGGCGGGCAGAGCTGCTGGAGCG
AGTGTTACGGAACCTGGAGGTGCAGAATGCCGTGCTGGTGAGCCCTTCCCTGAGTGGCCG
CTATGCTCTGCCCTTCCTGATGCGAGGCCACCACCAGCTGCATGGATTCGTGCCCATTGC
ACCTGCTTCCACCCAGAATTACACCCAGGAACAGTTCTGGGCTGTGAAGACCCCGACTCT
CATCTTGTATGGGGAGCTGGACCGCATCCTGGCTCAGGAGTCACTGCAGCAGCTCCGCCA
CCTGCCTAACCACTCTGTGGTGAAGCTGCGCGACGCAGGCCATGCCTGCTACCTCCACAA
GCCACAAGACTTCCACCTCGTCCTCCTTGCCTTTCTTGACCATCTGCCTTGAGCTTACCC
ACTGCCCAGGCCCAGGCTTGGCCTAAGCTTGGAGGGTCTGAACCAGTCCTCACCAGGGAA
GCAGTCCCTAGAATTGGAGGGCAGCAACCAGAGGACCAGGCCCAGTTAGGACCTCTCATT
TCATCTCAGAGGCACAATAAAAAAGAAAACAAAAATTTTTGTTATGCCTTGGGAATGATA
GGTCCTATTTCCTGATGTTGCTGCAGGTGGGGTGGGAGCTAAGGGCAGGTCTGGGACTGC
TTTGGGGCTGAGAGCTGGAGGGAGTGCTTTTCAGTAGCTTGGGAAGGCTAAGGACATGGG
CTGCTCATAGACGGCCAGCGTTACCACTCTGTAACTGAGTTTCCTCATCTGTAAAATGGG
CATGATGGTAACACCTAGCTCAGGAAAGTGGTTTTAGGATTGAATGAAATGTCTGGGTAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGCGAGCGAGGGACGCGGGGTGCTCAGAGCGCGGCCTGCTGGGTCCAACGCACTGACGCC
GCGGCCAGGGGCGCGGTCACCGGCGCCACCAAGGTTTGCTCTGTCCCCTCCGAGGACCTC
GATTCTGGCTCGCAGGATCTGCTTCCCTGTTCCCGCGAGGCAGCGCGTTGGTCGCGGCTC
TCTTTGGCTGCTGGTTGCTCCTGGGCGGAGCCCGCCCCGCGGTGGCTGGCCGGGTCAACC
CGGTCGGCCCGCAAGGTGCCCTGTGTCCCAGGCCCATCAAAGGAGAGGTGCAACAAGAAT
ACTTTGCCTGATAGGAACCTAGGGTGCTGCGTTGGAGGTGTGCAACGGAGGCTGGTTGTG
GGTCAGAAGGAAAAGAGGACCCAGCTCTTCCTCCATTCAGCTCTGGTTCTCCATCAGCCC
CAGAGGGGCTGCCACTGCCCAGTCACCACCTGACCCTGGAAGGGGGATCGGCGTGGGAGA
CATCCCCAAAGCTTCTGGAAACAAGACTGTGGTACAGTCCTCAATGAGCCGGTCCCAGGT
AGCCCTGCTGGGCCTGGGCCTGCTGCTTATGCTGCTACTGTATGTGGGGCTTCCAGGACC
ATCTGAGCAGACCTCCTGGCTCTGGGGAGATCCCAATATCACGATCCTGGCTGGTCTCAC
CCCTGGCGACTCCCCCCTTTTTTACCGCGAGGTGCTCCCCCTCCACCGGGCCCGCAGGGT
GGATGTGGTGCTGCTCCATGGAAAGGCCTTTAACTCCCACACGTGGGAGCAGCTGGGCAC
GCTGCAACTGCTGGCGCAGAGGGGCTACCGGGCCGTGGCCCTTGACCTCCCAGGTTTTGG
GAATTCGGCACCTTCAAAGGAGGCAAGCACAGAGGCGGGGCGGGCAGAGCTGCTGGAGCG
AGTGTTACGGAACCTGGAGGTGCAGAATGCCGTGCTGGTGAGCCCTTCCCTGAGTGGCCG
CTATGCTCTGCCCTTCCTGATGCGAGGCCACCACCAGCTGCATGGATTCGTGCCCATTGC
ACCTGCTTCCACCCAGAATTACACCCAGGAACAGTTCTGGGCTGTGAAGACCCCGACTCT
CATCTTGTATGGGGAGCTGGACCGCATCCTGGCTCAGGAGTCACTGCAGCAGCTCCGCCA
CCTGCCTAACCACTCTGTGGTGAAGCTGCGCGACGCAGGCCATGCCTGCTACCTCCACAA
GCCACAAGACTTCCACCTCGTCCTCCTTGCCTTTCTTGACCATCTGCCTTGAGCTTACCC
ACTGCCCAGGCCCAGGCTTGGCCTAAGCTTGGAGGGTCTGAACCAGTCCTCACCAGGGAA
GCAGTCCCTAGAATTGGAGGGCAGCAACCAGAGGACCAGGCCCAGTTAGGACCTCTCATT
TCATCTCAGAGGCACAATAAAAAAGAAAACAAAAATTTTTGTTATGCCTTGGGAATGATA
GGTCCTATTTCCTGATGTTGCTGCAGGTGGGGTGGGAGCTAAGGGCAGGTCTGGGACTGC
TTTGGGGCTGAGAGCTGGAGGGAGTGCTTTTCAGTAGCTTGGGAAGGCTAAGGACATGGG
CTGCTCATAGACGGCCAGCGTTACCACTCTGTAACTGAGTTTCCTCATCTGTAAAATGGG
CATGATGGTAACACCTAGCTCAGGAAAGTGGTTTTAGGATTGAATGAAATGTCTGGGTAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
7-141, gnl|bosTau2|chr22 (36482224-36482357) |
|
7-141, gnl|Mm7|chr9 (106178421-106178305) |
| |
|
254-498, gnl|bosTau2|chr22 (36484610-36484853) |
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254-498, gnl|canFam2|chr20 (40738159-40737651) |
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254-498, gnl|hg17|chr3 (51984919-51985449) |
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254-498, gnl|Hg17|chr3 (51985121-51985370) |
|
254-498, gnl|loxAfr1|scaffold_47165 (35349-34855) |
|
254-498, gnl|mm7|chr9 (106175395-106174901) |
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254-498, gnl|Mm7|chr9 (106175192-106174979) |
|
254-498, gnl|oryCun1|scaffold_191230 (19942-20350) |
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254-498, gnl|panTro1|chr2 (53594817-53595347) |
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254-498, gnl|rheMac2|chr2 (84421775-84421254) |
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254-498, gnl|rn3|chr8 (111608887-111608355) |
| |
|
504-718, gnl|bosTau2|chr22 (36486051-36486271) |
|
504-718, gnl|Hg17|chr3 (51986925-51987139) |
|
504-718, gnl|Mm7|chr9 (106173756-106173537) |
| |
|
1065-1680, gnl|bosTau2|chr22 (36488442-36489051) |
|
1065-1680, gnl|Hg17|chr3 (51989887-51990489) |
|
1065-1680, gnl|Mm7|chr9 (106169857-106169281) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
7-141, gnl|bosTau2|chr22 (36482224-36482357) |
|
7-141, gnl|Mm7|chr9 (106178421-106178305) |
| |
|
254-498, gnl|bosTau2|chr22 (36484610-36484853) |
|
254-498, gnl|canFam2|chr20 (40738159-40737651) |
|
254-498, gnl|hg17|chr3 (51984919-51985449) |
|
254-498, gnl|Hg17|chr3 (51985121-51985370) |
|
254-498, gnl|loxAfr1|scaffold_47165 (35349-34855) |
|
254-498, gnl|mm7|chr9 (106175395-106174901) |
|
254-498, gnl|Mm7|chr9 (106175192-106174979) |
|
254-498, gnl|oryCun1|scaffold_191230 (19942-20350) |
|
254-498, gnl|panTro1|chr2 (53594817-53595347) |
|
254-498, gnl|rheMac2|chr2 (84421775-84421254) |
|
254-498, gnl|rn3|chr8 (111608887-111608355) |
| |
|
504-718, gnl|bosTau2|chr22 (36486051-36486271) |
|
504-718, gnl|Hg17|chr3 (51986925-51987139) |
|
504-718, gnl|Mm7|chr9 (106173756-106173537) |
| |
|
1065-1680, gnl|bosTau2|chr22 (36488442-36489051) |
|
1065-1680, gnl|Hg17|chr3 (51989887-51990489) |
|
1065-1680, gnl|Mm7|chr9 (106169857-106169281) |
|
amn (0.417711) |
|
fli (0.405762) |
|
eru (0.240096) |
|
cty (0.20816) |
|
nlu (0.191681) |
|
fbs (0.175346) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
cly (0.120642) |
|
amn (0.417711) |
|
fli (0.405762) |
|
eru (0.240096) |
|
cty (0.20816) |
|
nlu (0.191681) |
|
fbs (0.175346) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
cly (0.120642) |
