Non-Coding RNA Search

Ss1.1-Tra1-TCH01C100081.5

Sequence:


               
               TGCTCCTCCCCGTTCGACAGACAGCCGTGTGTTCCGTGCATTGCCAGCCGCGTCCCTGAG
ACACGATGGTGAAGGTCGGAGTGAACGGATTTGGCCGCATCGGGCGCCTGGTCACCAGGG
CTGCTTTTAACTCTGGCAAAGTGGACATTGTCGCCATCAATGACCCCTTCATTGACCTCC
ACTACATGGTCTACATGTTCCAGTATGATTCCACCCACGGCAAGTTCCACGGCACAGTCA
AGGCGGAGAACGGGAAGCTTGTCATCAATGGAAAGGCCATCACCATCTTCCAGGAGCGAG
ATCCCGCCAACATCAAATGGGGCGATGCTGGTGCTACGTATGTTGTGGAGTCCACTGGTG
TCTTCACGACCATGGAGAAGGCCGGGGCTCACTTGAAGGGTGGGGCCAAGAGGGTCATCA
TCTCTGCCCCTTCTGCCGATGCCCCCATGTTTGTGATGGGCGTGAACCATGAGAAGTATG
ACAACTCCCTCAAGATCGTCAGCAATGCCTCCTGCACCACCAACTGCTTGGCACCCCTGG
CCAAGGTCATCCATGACCACTTCGGCATCGTGGAGGGACTCATGACCACGGTCCATGCCA
TCACTGCCACCCAGAAGACTGTGGATGGCCCGTCTGGGAAGCTGTGGCGTGATGGCCGAG
GGGCTGCCCAGAACATCATCCCTGCTTCTACCGGCGCTGCCAAGGCTGTGGGCAAGGTCA
TCCCTGAGCTCAACGGGAAGCTCACTGGCATGGCCTTCCGTGTCCCCACCCCCAACGTGT
CGGTTGTGGATCTGACCTGCCGCCTGGAGAAACCTGCAAAATATGATGACATCAAGAAGG
TGGTGAAGCAGGCGTCCGAGGGCCCCCTCAAGGGCATCCTGGGCTACACTGAGGACCAGG
TTGTGTCCTGTGACTTCAACAGTGACACTCACTCTTCTACCTTTGATGCTGGGGCTGGCA
TTGCCCTCAACGACCACTTCGTCAAGCTCATTTCCTGGTACGACAATGAATTTGGCTACA
GCAACAGGGTGGTGGACCTCATGGTCCACATGGCCTCCAAGGAGTAAGAGCCCCTGGACC
ACCAACCCCAGCAAGAGCACGCGAGGAGGAGAGAGGCCCTCAGCTGCTGGGGAGTCACAG
CCCCAACTCGATCCCCCAACACACCGAGCATCTCCTGACTTCCAGTTTCCATCCCAGACC
CCCGGAAGAAGGGGAGGGGCTTAGGGAGACCTGCCTCGTCATGTACCATCAATAAAGTAC
ACTGTACCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTCCTCCCCGTTCGACAGACAGCCGTGTGTTCCGTGCATTGCCAGCCGCGTCCCTGAG
ACACGATGGTGAAGGTCGGAGTGAACGGATTTGGCCGCATCGGGCGCCTGGTCACCAGGG
CTGCTTTTAACTCTGGCAAAGTGGACATTGTCGCCATCAATGACCCCTTCATTGACCTCC
ACTACATGGTCTACATGTTCCAGTATGATTCCACCCACGGCAAGTTCCACGGCACAGTCA
AGGCGGAGAACGGGAAGCTTGTCATCAATGGAAAGGCCATCACCATCTTCCAGGAGCGAG
ATCCCGCCAACATCAAATGGGGCGATGCTGGTGCTACGTATGTTGTGGAGTCCACTGGTG
TCTTCACGACCATGGAGAAGGCCGGGGCTCACTTGAAGGGTGGGGCCAAGAGGGTCATCA
TCTCTGCCCCTTCTGCCGATGCCCCCATGTTTGTGATGGGCGTGAACCATGAGAAGTATG
ACAACTCCCTCAAGATCGTCAGCAATGCCTCCTGCACCACCAACTGCTTGGCACCCCTGG
CCAAGGTCATCCATGACCACTTCGGCATCGTGGAGGGACTCATGACCACGGTCCATGCCA
TCACTGCCACCCAGAAGACTGTGGATGGCCCGTCTGGGAAGCTGTGGCGTGATGGCCGAG
GGGCTGCCCAGAACATCATCCCTGCTTCTACCGGCGCTGCCAAGGCTGTGGGCAAGGTCA
TCCCTGAGCTCAACGGGAAGCTCACTGGCATGGCCTTCCGTGTCCCCACCCCCAACGTGT
CGGTTGTGGATCTGACCTGCCGCCTGGAGAAACCTGCAAAATATGATGACATCAAGAAGG
TGGTGAAGCAGGCGTCCGAGGGCCCCCTCAAGGGCATCCTGGGCTACACTGAGGACCAGG
TTGTGTCCTGTGACTTCAACAGTGACACTCACTCTTCTACCTTTGATGCTGGGGCTGGCA
TTGCCCTCAACGACCACTTCGTCAAGCTCATTTCCTGGTACGACAATGAATTTGGCTACA
GCAACAGGGTGGTGGACCTCATGGTCCACATGGCCTCCAAGGAGTAAGAGCCCCTGGACC
ACCAACCCCAGCAAGAGCACGCGAGGAGGAGAGAGGCCCTCAGCTGCTGGGGAGTCACAG
CCCCAACTCGATCCCCCAACACACCGAGCATCTCCTGACTTCCAGTTTCCATCCCAGACC
CCCGGAAGAAGGGGAGGGGCTTAGGGAGACCTGCCTCGTCATGTACCATCAATAAAGTAC
ACTGTACCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|2506441|sp|P00355|G3P_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2506441|sp|P00355|G3P_PIG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               113-232, - strand, RNAz p=0.796787
               

               
               1031-1150, - strand, RNAz p=0.579635

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-232, - strand, RNAz p=0.796787
               

               
               1031-1150, - strand, RNAz p=0.579635

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1293, gnl|bosTau2|chr11 (30091110-30089817)
               

               
               1-1293, gnl|Hg17|chr2 (38424139-38425406)
               

               
               1-1293, gnl|Mm7|chr11 (63394943-63393659)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1293, gnl|bosTau2|chr11 (30091110-30089817)
               

               
               1-1293, gnl|Hg17|chr2 (38424139-38425406)
               

               
               1-1293, gnl|Mm7|chr11 (63394943-63393659)

Expressed library(ies): 63 entry(ies)

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Expressed library(ies): 63 entry(ies)

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               cbr (21.3719)
               

               
               mas (18.0862)
               

               
               nms (15.8255)
               

               
               ton (7.54651)
               

               
               hlv (5.98802)
               

               
               ese (5.31309)
               

               
               nep (5.1499)
               

               
               cov (4.49319)
               

               
               ece (4.3568)
               

               
               clu (4.1876)
               

               
               hyp (3.99943)
               

               
               amn (3.7594)
               

               
               cty (3.74688)
               

               
               fty (3.51679)
               

               
               fbs (3.33158)
               

               
               eep (3.30923)
               

               
               col (3.12012)
               

               
               nco (3.07294)
               

               
               nlu (3.0669)
               

               
               cag (3.02389)
               

               
               cbl (2.98473)
               

               
               cly (2.8954)
               

               
               ecc (2.87588)
               

               
               jca (2.849)
               

               
               ebs (2.72093)
               

               
               ill (2.4583)
               

               
               jej (2.2752)
               

               
               duo (2.24641)
               

               
               fhi (2.20451)
               

               
               fcc (2.17563)
               

               
               lnt (2.13462)
               

               
               csp (2.09542)
               

               
               nca (2.05311)
               

               
               eru (2.04082)
               

               
               elu (1.92678)
               

               
               che (1.9084)
               

               
               fce (1.62955)
               

               
               eje (1.58134)
               

               
               ctl (1.53069)
               

               
               cli (1.52812)
               

               
               ute (1.46063)
               

               
               med (1.27877)
               

               
               sme (1.22175)
               

               
               nje (1.16144)
               

               
               eye (1.02302)
               

               
               pty (0.999001)
               

               
               ldo (0.970026)
               

               
               ssp (0.948638)
               

               
               nmm (0.929615)
               

               
               eli (0.910885)
               

               
               pgl (0.7109)
               

               
               nbm (0.695272)
               

               
               cst (0.560146)
               

               
               ste (0.540833)
               

               
               mcp (0.511945)
               

               
               cga (0.279096)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               spl (0.143184)

Expressed library(ies): 63 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (21.3719)
               

               
               mas (18.0862)
               

               
               nms (15.8255)
               

               
               ton (7.54651)
               

               
               hlv (5.98802)
               

               
               ese (5.31309)
               

               
               nep (5.1499)
               

               
               cov (4.49319)
               

               
               ece (4.3568)
               

               
               clu (4.1876)
               

               
               hyp (3.99943)
               

               
               amn (3.7594)
               

               
               cty (3.74688)
               

               
               fty (3.51679)
               

               
               fbs (3.33158)
               

               
               eep (3.30923)
               

               
               col (3.12012)
               

               
               nco (3.07294)
               

               
               nlu (3.0669)
               

               
               cag (3.02389)
               

               
               cbl (2.98473)
               

               
               cly (2.8954)
               

               
               ecc (2.87588)
               

               
               jca (2.849)
               

               
               ebs (2.72093)
               

               
               ill (2.4583)
               

               
               jej (2.2752)
               

               
               duo (2.24641)
               

               
               fhi (2.20451)
               

               
               fcc (2.17563)
               

               
               lnt (2.13462)
               

               
               csp (2.09542)
               

               
               nca (2.05311)
               

               
               eru (2.04082)
               

               
               elu (1.92678)
               

               
               che (1.9084)
               

               
               fce (1.62955)
               

               
               eje (1.58134)
               

               
               ctl (1.53069)
               

               
               cli (1.52812)
               

               
               ute (1.46063)
               

               
               med (1.27877)
               

               
               sme (1.22175)
               

               
               nje (1.16144)
               

               
               eye (1.02302)
               

               
               pty (0.999001)
               

               
               ldo (0.970026)
               

               
               ssp (0.948638)
               

               
               nmm (0.929615)
               

               
               eli (0.910885)
               

               
               pgl (0.7109)
               

               
               nbm (0.695272)
               

               
               cst (0.560146)
               

               
               ste (0.540833)
               

               
               mcp (0.511945)
               

               
               cga (0.279096)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               spl (0.143184)

	113-232, - strand, RNAz p=0.796787
	1031-1150, - strand, RNAz p=0.579635

	1-1293, gnl\|bosTau2\|chr11 (30091110-30089817)
	1-1293, gnl\|Hg17\|chr2 (38424139-38425406)
	1-1293, gnl\|Mm7\|chr11 (63394943-63393659)

	cbr (21.3719)
	mas (18.0862)
	nms (15.8255)
	ton (7.54651)
	hlv (5.98802)
	ese (5.31309)
	nep (5.1499)
	cov (4.49319)
	ece (4.3568)
	clu (4.1876)
	hyp (3.99943)
	amn (3.7594)
	cty (3.74688)
	fty (3.51679)
	fbs (3.33158)
	eep (3.30923)
	col (3.12012)
	nco (3.07294)
	nlu (3.0669)
	cag (3.02389)
	cbl (2.98473)
	cly (2.8954)
	ecc (2.87588)
	jca (2.849)
	ebs (2.72093)
	ill (2.4583)
	jej (2.2752)
	duo (2.24641)
	fhi (2.20451)
	fcc (2.17563)
	lnt (2.13462)
	csp (2.09542)
	nca (2.05311)
	eru (2.04082)
	elu (1.92678)
	che (1.9084)
	fce (1.62955)
	eje (1.58134)
	ctl (1.53069)
	cli (1.52812)
	ute (1.46063)
	med (1.27877)
	sme (1.22175)
	nje (1.16144)
	eye (1.02302)
	pty (0.999001)
	ldo (0.970026)
	ssp (0.948638)
	nmm (0.929615)
	eli (0.910885)
	pgl (0.7109)
	nbm (0.695272)
	cst (0.560146)
	ste (0.540833)
	mcp (0.511945)
	cga (0.279096)
	hea (0.204499)
	fli (0.202881)
	cut (0.169924)
	cje (0.165235)
	cki (0.165235)
	fco (0.157208)
	spl (0.143184)