Ss1.1-Tra1-TCH01C110036.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGCTGACGTCGGATGAGGGAGCAGGAGGGACGCTCGGATCGCGGCAGGGAGGCTCCTG GGGGCCAGGGTTCCGAGGTAATAATATAAAGTATCCTCTCATGCTCTTTCCCTGCCCCTT CTCTCCAAATCATCAGCAGTAGAAAAAGAAGAAGAATAAAACATGTCAGGACACAAATGC AGTTATCCCTGGGACTTACAGGATCGATATGCTCAAGATAAGTCAGTTGTGAATAAAATG CAACAAAAGTATTGGGAAACAAAGCAGGCCTTTATTAAAGCTACAGGGAAGAAGGAGGAT GAACATGTTGTTGCCTCTGATGTAGACCTGGATGCCAAGCTGGAGCTCTTTCACTCGATT CAGAGAACCTGTCTGGACTTGTCTAAAGCTATTGTTCTCTATCAAAAAAGAATATGTTTC TTGTCTCAGGAAGAAAACGAACTGGGAAAATTCCTCCGATCCCAAGGCTTCCAAGATAAA ACCAGAGCAGGGAAAATGATGCAAGCGACAGGAAAGGCCCTCTGCTTTTCTTCCCAGCAA AGATTGGCCTTGCGAAATCCTTTGTGTCGCTTTCACCAAGAAGTGGAGACTTTTCGGCAT CGGGCCATCTCAGACACTTGGCTGACAGTGAACCGCATGGAGCAATGCCGGACTGAATAC AGAGGGGCATTGCTGTGGATGAAGGATGTGTCACAGGAGCTTGATCCAGACCTCTACAAG CAAATGGAGAAGTTCAGGAAGGTGCAAACACAAGTTCGCCTTGCCAAAAAAAGCTTTGAC AAATTGAAGATGGATGTGTGTCAAAAAGTGGATCTTCTTGGAGCGAGCAGATGCAATCTC TTGTCTCACATGCTAGCGACATACCAGACCACTCTGCTTCATTTTTGGGAGAAAACGTCT CACACCATGGCAGCCATCCATGAGAGCTTCAAAGGTTATCAGCCATATGAATTCACTACG TTAAAGAGCTTACAAGACCCTATGAAAAAACTGGTTGAGAAAGAAGAAAGGAAGAGGATC ACCCAGCAGGAAAGTGCCGAGGTCACTGCAGAGGAGCCCAGTCAGTTAATTTCATTAGAG GATGAAAACCAGCACAAGGAATCCTCTAGTTTTAAGACTGAAGATGGAAAAAGTGTTTTA TCCGCTTTGGACAAAAGCTCTACACATGGTGTATGCTCAGAAGAACTATTAGACATGAAA CCCGAGGAAGGTGCTTGCCTGGGCCCAATGGCAGGGACCCCGGAACCTGAAGGTGCTGAC AAAGATGACCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGCTGACGTCGGATGAGGGAGCAGGAGGGACGCTCGGATCGCGGCAGGGAGGCTCCTG GGGGCCAGGGTTCCGAGGTAATAATATAAAGTATCCTCTCATGCTCTTTCCCTGCCCCTT CTCTCCAAATCATCAGCAGTAGAAAAAGAAGAAGAATAAAACATGTCAGGACACAAATGC AGTTATCCCTGGGACTTACAGGATCGATATGCTCAAGATAAGTCAGTTGTGAATAAAATG CAACAAAAGTATTGGGAAACAAAGCAGGCCTTTATTAAAGCTACAGGGAAGAAGGAGGAT GAACATGTTGTTGCCTCTGATGTAGACCTGGATGCCAAGCTGGAGCTCTTTCACTCGATT CAGAGAACCTGTCTGGACTTGTCTAAAGCTATTGTTCTCTATCAAAAAAGAATATGTTTC TTGTCTCAGGAAGAAAACGAACTGGGAAAATTCCTCCGATCCCAAGGCTTCCAAGATAAA ACCAGAGCAGGGAAAATGATGCAAGCGACAGGAAAGGCCCTCTGCTTTTCTTCCCAGCAA AGATTGGCCTTGCGAAATCCTTTGTGTCGCTTTCACCAAGAAGTGGAGACTTTTCGGCAT CGGGCCATCTCAGACACTTGGCTGACAGTGAACCGCATGGAGCAATGCCGGACTGAATAC AGAGGGGCATTGCTGTGGATGAAGGATGTGTCACAGGAGCTTGATCCAGACCTCTACAAG CAAATGGAGAAGTTCAGGAAGGTGCAAACACAAGTTCGCCTTGCCAAAAAAAGCTTTGAC AAATTGAAGATGGATGTGTGTCAAAAAGTGGATCTTCTTGGAGCGAGCAGATGCAATCTC TTGTCTCACATGCTAGCGACATACCAGACCACTCTGCTTCATTTTTGGGAGAAAACGTCT CACACCATGGCAGCCATCCATGAGAGCTTCAAAGGTTATCAGCCATATGAATTCACTACG TTAAAGAGCTTACAAGACCCTATGAAAAAACTGGTTGAGAAAGAAGAAAGGAAGAGGATC ACCCAGCAGGAAAGTGCCGAGGTCACTGCAGAGGAGCCCAGTCAGTTAATTTCATTAGAG GATGAAAACCAGCACAAGGAATCCTCTAGTTTTAAGACTGAAGATGGAAAAAGTGTTTTA TCCGCTTTGGACAAAAGCTCTACACATGGTGTATGCTCAGAAGAACTATTAGACATGAAA CCCGAGGAAGGTGCTTGCCTGGGCCCAATGGCAGGGACCCCGGAACCTGAAGGTGCTGAC AAAGATGACCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 179-297, + strand, RNAz p=0.602094 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 179-297, + strand, RNAz p=0.602094 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 179-345, gnl|bosTau2|chr23 (6451106-6451272) | |
| 179-345, gnl|canFam2|chr14 (26742046-26742195) | |
| 179-345, gnl|dasNov1|scaffold_6278 (44845-44994) | |
| 179-345, gnl|echTel1|scaffold_292311 (50375-50524) | |
| 179-345, gnl|fr1|chrUn (143140714-143140867) | |
| 179-345, gnl|galGal2|chr2 (24305228-24305378) | |
| 179-345, gnl|hg17|chr7 (8045454-8045603) | |
| 179-345, gnl|Hg17|chr7 (8045626-8045460) | |
| 179-345, gnl|loxAfr1|scaffold_183816 (647-787) | |
| 179-345, gnl|mm7|chr6 (8712847-8712996) | |
| 179-345, gnl|Mm7|chr6 (8713019-8712853) | |
| 179-345, gnl|oryCun1|scaffold_98533 (3335-3186) | |
| 179-345, gnl|panTro1|chr6 (8517960-8518109) | |
| 179-345, gnl|rheMac2|chr3 (118126966-118126817) | |
| 179-345, gnl|rn3|chr4 (33926780-33926929) | |
| 179-345, gnl|tetNig1|chrUn_random (31747879-31747726) | |
| 179-345, gnl|xenTro1|scaffold_420 (50026-49876) | |
| 541-743, gnl|bosTau2|chr23 (6463852-6464054) | |
| 541-743, gnl|canFam2|chr14 (26727578-26727802) | |
| 541-743, gnl|danRer3|chrNA (207193204-207192984) | |
| 541-743, gnl|dasNov1|scaffold_170418 (4741-4966) | |
| 541-743, gnl|echTel1|scaffold_317756 (5750-5974) | |
| 541-743, gnl|fr1|chrUn (143139795-143140001) | |
| 541-743, gnl|galGal2|chr2 (24299252-24299490) | |
| 541-743, gnl|hg17|chr7 (8031170-8031394) | |
| 541-743, gnl|Hg17|chr7 (8031375-8031173) | |
| 541-743, gnl|loxAfr1|scaffold_2526 (87287-87063) | |
| 541-743, gnl|mm7|chr6 (8695276-8695500) | |
| 541-743, gnl|Mm7|chr6 (8695481-8695279) | |
| 541-743, gnl|monDom2|scaffold_236 (477119-476895) | |
| 541-743, gnl|oryCun1|scaffold_210302 (232327-232551) | |
| 541-743, gnl|panTro1|chr6 (8503663-8503887) | |
| 541-743, gnl|rheMac2|chr3 (118141945-118141721) | |
| 541-743, gnl|rn3|chr4 (33909262-33909486) | |
| 541-743, gnl|tetNig1|chrUn_random (31748761-31748559) | |
| 541-743, gnl|xenTro1|scaffold_420 (53928-53718) | |
| 865-966, gnl|bosTau2|chr23 (6534099-6534200) | |
| 865-966, gnl|canFam2|chr14 (26662480-26662415) | |
| 865-966, gnl|danRer3|chrNA (207196951-207197016) | |
| 865-966, gnl|dasNov1|scaffold_144226 (1320-1383) | |
| 865-966, gnl|echTel1|scaffold_312605 (54598-54532) | |
| 865-966, gnl|hg17|chr16 (21917723-21917788) | |
| 865-966, gnl|Hg17|chr7 (7970087-7969986) | |
| 865-966, gnl|loxAfr1|scaffold_46621 (8545-8480) | |
| 865-966, gnl|mm7|chr6 (8629060-8628995) | |
| 865-966, gnl|Mm7|chr6 (8629059-8628958) | |
| 865-966, gnl|oryCun1|scaffold_210302 (165877-165812) | |
| 865-966, gnl|panTro1|chr18_random (10077719-10077784) | |
| 865-966, gnl|rheMac2|chr20 (20409873-20409935) | |
| 865-966, gnl|rn3|chr4 (33836168-33836103) | |
| 865-966, gnl|tetNig1|chrUn_random (31749661-31749726) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 179-345, gnl|bosTau2|chr23 (6451106-6451272) | |
| 179-345, gnl|canFam2|chr14 (26742046-26742195) | |
| 179-345, gnl|dasNov1|scaffold_6278 (44845-44994) | |
| 179-345, gnl|echTel1|scaffold_292311 (50375-50524) | |
| 179-345, gnl|fr1|chrUn (143140714-143140867) | |
| 179-345, gnl|galGal2|chr2 (24305228-24305378) | |
| 179-345, gnl|hg17|chr7 (8045454-8045603) | |
| 179-345, gnl|Hg17|chr7 (8045626-8045460) | |
| 179-345, gnl|loxAfr1|scaffold_183816 (647-787) | |
| 179-345, gnl|mm7|chr6 (8712847-8712996) | |
| 179-345, gnl|Mm7|chr6 (8713019-8712853) | |
| 179-345, gnl|oryCun1|scaffold_98533 (3335-3186) | |
| 179-345, gnl|panTro1|chr6 (8517960-8518109) | |
| 179-345, gnl|rheMac2|chr3 (118126966-118126817) | |
| 179-345, gnl|rn3|chr4 (33926780-33926929) | |
| 179-345, gnl|tetNig1|chrUn_random (31747879-31747726) | |
| 179-345, gnl|xenTro1|scaffold_420 (50026-49876) | |
| 541-743, gnl|bosTau2|chr23 (6463852-6464054) | |
| 541-743, gnl|canFam2|chr14 (26727578-26727802) | |
| 541-743, gnl|danRer3|chrNA (207193204-207192984) | |
| 541-743, gnl|dasNov1|scaffold_170418 (4741-4966) | |
| 541-743, gnl|echTel1|scaffold_317756 (5750-5974) | |
| 541-743, gnl|fr1|chrUn (143139795-143140001) | |
| 541-743, gnl|galGal2|chr2 (24299252-24299490) | |
| 541-743, gnl|hg17|chr7 (8031170-8031394) | |
| 541-743, gnl|Hg17|chr7 (8031375-8031173) | |
| 541-743, gnl|loxAfr1|scaffold_2526 (87287-87063) | |
| 541-743, gnl|mm7|chr6 (8695276-8695500) | |
| 541-743, gnl|Mm7|chr6 (8695481-8695279) | |
| 541-743, gnl|monDom2|scaffold_236 (477119-476895) | |
| 541-743, gnl|oryCun1|scaffold_210302 (232327-232551) | |
| 541-743, gnl|panTro1|chr6 (8503663-8503887) | |
| 541-743, gnl|rheMac2|chr3 (118141945-118141721) | |
| 541-743, gnl|rn3|chr4 (33909262-33909486) | |
| 541-743, gnl|tetNig1|chrUn_random (31748761-31748559) | |
| 541-743, gnl|xenTro1|scaffold_420 (53928-53718) | |
| 865-966, gnl|bosTau2|chr23 (6534099-6534200) | |
| 865-966, gnl|canFam2|chr14 (26662480-26662415) | |
| 865-966, gnl|danRer3|chrNA (207196951-207197016) | |
| 865-966, gnl|dasNov1|scaffold_144226 (1320-1383) | |
| 865-966, gnl|echTel1|scaffold_312605 (54598-54532) | |
| 865-966, gnl|hg17|chr16 (21917723-21917788) | |
| 865-966, gnl|Hg17|chr7 (7970087-7969986) | |
| 865-966, gnl|loxAfr1|scaffold_46621 (8545-8480) | |
| 865-966, gnl|mm7|chr6 (8629060-8628995) | |
| 865-966, gnl|Mm7|chr6 (8629059-8628958) | |
| 865-966, gnl|oryCun1|scaffold_210302 (165877-165812) | |
| 865-966, gnl|panTro1|chr18_random (10077719-10077784) | |
| 865-966, gnl|rheMac2|chr20 (20409873-20409935) | |
| 865-966, gnl|rn3|chr4 (33836168-33836103) | |
| 865-966, gnl|tetNig1|chrUn_random (31749661-31749726) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.236967) | |
| tes (0.207814) | |
| cov (0.132153) |