Ss1.1-Tra1-TCH01C110044.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGACACTTCCAGTTTCTGCGTTGGTCTGCGTACCGGGACACGCCTGACTCCAAGAAGGCC TTCCTGCACCTGCTGGCCGCGGTGGACAAGTGGCAGGCAGAGAGCGGGGACGGCCGCACC ATCGTGCACTGCCTAAATGGGGGCGGCCGCAGCGGCACCTTCTGCGCCTGCGCCACGGTC CTGGAGATGATCCGCTGCCACAACCTGGTGGATGTTTTCTTTGCTGCCAAAACGCTTAGG AACTACAAGCCCAATATGGTGGAGACCCTGGATCAGTACCACTTTTGCTATGATGTGGCC CTGGAGTACCTGGAGGGGCTGGAGTCAAGATAGCAGGGGGGCCCCTGGCCTGGGGCACCC ACTGCGCACTCAGGGCCAGGCCCACCATCCCGGACCGATGAGGAAGACCTGCGCCCCCGA CTCTGCTCAGCCTCAGCCCCCCACGGGGAAAGCACCGGAGTGGGCGCTGGGCCATCTTGG TGTCCCCTTCCTCTGTGGGCAGGGCCTTTCGCCATGTCCGTGGACAGGCTGCGGGCCAAG GAGGAGCTTAGCAAAACAGCAGCCCAGCCCGCCTCCACAGGATCCTGCAGGCCTGTGCTC AGAGGCCTGGTACTGCCTGGCAGAGCGATGGGCTCAGTACTGCCAGCTCTGGGGGACCTG GGCCCAGCCCCTGGACTGCATCCAGCCCTTGGCAGAGATGAGCGAGGGCCCGTAGAGCAT GTGCCAGGCCAGAGTTCCTACCCAGCTTGGCTCAACGTGGGTAGAGAGCGTGTTGGGGCC TGGCACCTAGCGTCCCATCCAGCCCAGCCCCCGAGGGTCCTGGGGAGACTGGGTTCTGCC CTGATTTGCCAGTGGGCACATCAGACTGGTCCTCTGAGGGGCAGCTTCAGCTCCCTCCCC CCTCCGCTGCCTTCCTGCAGCCCCGGGGATGTTTTGCTCATAATCCCCCCATTTCTGCTT CCCTGAATGTGCTCTGAGCATCCCTGAACCAGGATCTGCCCATCCCTACCCTGTCCTGTG TGGTGTCCCTTCCCTGCTTGACCCAATGTCTGCAGAATGAAGTCACCTTAGCCCCCTCTG CTGGAACTCTCAGGCCTCGCTGGCTGGGTCCTGCTCAGCCTGGGCCAGTGACAATCTGCA AGGCTGAGTGACAGCCCCTGGGGTTGAGGTCCCTGTGGCTCCTGGTCAGGCTACCCACTG GGGAGGGAGCACTGTTAAATCAGGGGTGCTCACCACCCCTAGAGTTTGGAGGAAGAAGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGACACTTCCAGTTTCTGCGTTGGTCTGCGTACCGGGACACGCCTGACTCCAAGAAGGCC TTCCTGCACCTGCTGGCCGCGGTGGACAAGTGGCAGGCAGAGAGCGGGGACGGCCGCACC ATCGTGCACTGCCTAAATGGGGGCGGCCGCAGCGGCACCTTCTGCGCCTGCGCCACGGTC CTGGAGATGATCCGCTGCCACAACCTGGTGGATGTTTTCTTTGCTGCCAAAACGCTTAGG AACTACAAGCCCAATATGGTGGAGACCCTGGATCAGTACCACTTTTGCTATGATGTGGCC CTGGAGTACCTGGAGGGGCTGGAGTCAAGATAGCAGGGGGGCCCCTGGCCTGGGGCACCC ACTGCGCACTCAGGGCCAGGCCCACCATCCCGGACCGATGAGGAAGACCTGCGCCCCCGA CTCTGCTCAGCCTCAGCCCCCCACGGGGAAAGCACCGGAGTGGGCGCTGGGCCATCTTGG TGTCCCCTTCCTCTGTGGGCAGGGCCTTTCGCCATGTCCGTGGACAGGCTGCGGGCCAAG GAGGAGCTTAGCAAAACAGCAGCCCAGCCCGCCTCCACAGGATCCTGCAGGCCTGTGCTC AGAGGCCTGGTACTGCCTGGCAGAGCGATGGGCTCAGTACTGCCAGCTCTGGGGGACCTG GGCCCAGCCCCTGGACTGCATCCAGCCCTTGGCAGAGATGAGCGAGGGCCCGTAGAGCAT GTGCCAGGCCAGAGTTCCTACCCAGCTTGGCTCAACGTGGGTAGAGAGCGTGTTGGGGCC TGGCACCTAGCGTCCCATCCAGCCCAGCCCCCGAGGGTCCTGGGGAGACTGGGTTCTGCC CTGATTTGCCAGTGGGCACATCAGACTGGTCCTCTGAGGGGCAGCTTCAGCTCCCTCCCC CCTCCGCTGCCTTCCTGCAGCCCCGGGGATGTTTTGCTCATAATCCCCCCATTTCTGCTT CCCTGAATGTGCTCTGAGCATCCCTGAACCAGGATCTGCCCATCCCTACCCTGTCCTGTG TGGTGTCCCTTCCCTGCTTGACCCAATGTCTGCAGAATGAAGTCACCTTAGCCCCCTCTG CTGGAACTCTCAGGCCTCGCTGGCTGGGTCCTGCTCAGCCTGGGCCAGTGACAATCTGCA AGGCTGAGTGACAGCCCCTGGGGTTGAGGTCCCTGTGGCTCCTGGTCAGGCTACCCACTG GGGAGGGAGCACTGTTAAATCAGGGGTGCTCACCACCCCTAGAGTTTGGAGGAAGAAGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 494-612, - strand, RNAz p=0.882799 | |
| 728-882, - strand, RNAz p=0.700288 | |
| 1034-1260, + strand, RNAz p=0.956561 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 494-612, - strand, RNAz p=0.882799 | |
| 728-882, - strand, RNAz p=0.700288 | |
| 1034-1260, + strand, RNAz p=0.956561 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of U73727, + |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-134, gnl|bosTau2|chr2 (77008928-77008795) | |
| 1-134, gnl|Hg17|chr1 (29470783-29470916) | |
| 1-134, gnl|Mm7|chr4 (130985719-130985586) | |
| 135-271, gnl|bosTau2|chr2 (77007587-77007451) | |
| 135-271, gnl|canFam2|chr2 (74177352-74177179) | |
| 135-271, gnl|danRer3|chr16 (47285321-47285162) | |
| 135-271, gnl|dasNov1|scaffold_204979 (3700-3523) | |
| 135-271, gnl|echTel1|scaffold_310765 (95294-95125) | |
| 135-271, gnl|fr1|chrUn (42888635-42888815) | |
| 135-271, gnl|galGal2|chr23 (2391997-2392158) | |
| 135-271, gnl|hg17|chr1 (29472298-29472471) | |
| 135-271, gnl|Hg17|chr1 (29472319-29472455) | |
| 135-271, gnl|loxAfr1|scaffold_75128 (5904-5728) | |
| 135-271, gnl|mm7|chr4 (130984330-130984157) | |
| 135-271, gnl|Mm7|chr4 (130984307-130984171) | |
| 135-271, gnl|monDom2|scaffold_43 (32780-32945) | |
| 135-271, gnl|oryCun1|scaffold_205950 (141373-141536) | |
| 135-271, gnl|panTro1|chr1 (30066205-30066378) | |
| 135-271, gnl|rheMac2|chr1 (32068741-32068914) | |
| 135-271, gnl|rn3|chr5 (150623196-150623023) | |
| 135-271, gnl|tetNig1|chr8 (5682883-5682720) | |
| 135-271, gnl|xenTro1|scaffold_985 (103017-103176) | |
| 136-263, gnl|bosTau2|chr24 (28421143-28421270) | |
| 136-263, gnl|canFam2|chr7 (77631803-77631945) | |
| 136-263, gnl|danRer3|chr20 (1910810-1910953) | |
| 136-263, gnl|dasNov1|scaffold_12051 (38898-39040) | |
| 136-263, gnl|echTel1|scaffold_319125 (85581-85439) | |
| 136-263, gnl|fr1|chrUn (99682483-99682625) | |
| 136-263, gnl|galGal2|chr2 (97372365-97372222) | |
| 136-263, gnl|hg17|chr18 (8384473-8384618) | |
| 136-263, gnl|Hg17|chr18 (8384475-8384602) | |
| 136-263, gnl|loxAfr1|scaffold_36212 (13638-13496) | |
| 136-263, gnl|mm7|chr17 (64951565-64951422) | |
| 136-263, gnl|Mm7|chr17 (64951561-64951434) | |
| 136-263, gnl|monDom2|scaffold_21 (24615295-24615153) | |
| 136-263, gnl|oryCun1|scaffold_117309 (3550-3693) | |
| 136-263, gnl|panTro1|chr17 (4300992-4300847) | |
| 136-263, gnl|rheMac2|chr10 (22362301-22362443) | |
| 136-263, gnl|rn3|chr9 (106007334-106007191) | |
| 136-263, gnl|tetNig1|chr15_random (1837894-1837749) | |
| 136-263, gnl|xenTro1|scaffold_333 (429339-429481) | |
| 440-1260, gnl|bosTau2|chr2 (77007094-77006275) | |
| 440-1260, gnl|Hg17|chr1 (29472866-29473712) | |
| 440-1260, gnl|Mm7|chr4 (130983844-130983111) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-134, gnl|bosTau2|chr2 (77008928-77008795) | |
| 1-134, gnl|Hg17|chr1 (29470783-29470916) | |
| 1-134, gnl|Mm7|chr4 (130985719-130985586) | |
| 135-271, gnl|bosTau2|chr2 (77007587-77007451) | |
| 135-271, gnl|canFam2|chr2 (74177352-74177179) | |
| 135-271, gnl|danRer3|chr16 (47285321-47285162) | |
| 135-271, gnl|dasNov1|scaffold_204979 (3700-3523) | |
| 135-271, gnl|echTel1|scaffold_310765 (95294-95125) | |
| 135-271, gnl|fr1|chrUn (42888635-42888815) | |
| 135-271, gnl|galGal2|chr23 (2391997-2392158) | |
| 135-271, gnl|hg17|chr1 (29472298-29472471) | |
| 135-271, gnl|Hg17|chr1 (29472319-29472455) | |
| 135-271, gnl|loxAfr1|scaffold_75128 (5904-5728) | |
| 135-271, gnl|mm7|chr4 (130984330-130984157) | |
| 135-271, gnl|Mm7|chr4 (130984307-130984171) | |
| 135-271, gnl|monDom2|scaffold_43 (32780-32945) | |
| 135-271, gnl|oryCun1|scaffold_205950 (141373-141536) | |
| 135-271, gnl|panTro1|chr1 (30066205-30066378) | |
| 135-271, gnl|rheMac2|chr1 (32068741-32068914) | |
| 135-271, gnl|rn3|chr5 (150623196-150623023) | |
| 135-271, gnl|tetNig1|chr8 (5682883-5682720) | |
| 135-271, gnl|xenTro1|scaffold_985 (103017-103176) | |
| 136-263, gnl|bosTau2|chr24 (28421143-28421270) | |
| 136-263, gnl|canFam2|chr7 (77631803-77631945) | |
| 136-263, gnl|danRer3|chr20 (1910810-1910953) | |
| 136-263, gnl|dasNov1|scaffold_12051 (38898-39040) | |
| 136-263, gnl|echTel1|scaffold_319125 (85581-85439) | |
| 136-263, gnl|fr1|chrUn (99682483-99682625) | |
| 136-263, gnl|galGal2|chr2 (97372365-97372222) | |
| 136-263, gnl|hg17|chr18 (8384473-8384618) | |
| 136-263, gnl|Hg17|chr18 (8384475-8384602) | |
| 136-263, gnl|loxAfr1|scaffold_36212 (13638-13496) | |
| 136-263, gnl|mm7|chr17 (64951565-64951422) | |
| 136-263, gnl|Mm7|chr17 (64951561-64951434) | |
| 136-263, gnl|monDom2|scaffold_21 (24615295-24615153) | |
| 136-263, gnl|oryCun1|scaffold_117309 (3550-3693) | |
| 136-263, gnl|panTro1|chr17 (4300992-4300847) | |
| 136-263, gnl|rheMac2|chr10 (22362301-22362443) | |
| 136-263, gnl|rn3|chr9 (106007334-106007191) | |
| 136-263, gnl|tetNig1|chr15_random (1837894-1837749) | |
| 136-263, gnl|xenTro1|scaffold_333 (429339-429481) | |
| 440-1260, gnl|bosTau2|chr2 (77007094-77006275) | |
| 440-1260, gnl|Hg17|chr1 (29472866-29473712) | |
| 440-1260, gnl|Mm7|chr4 (130983844-130983111) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ece (0.229305) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| ebs (0.118301) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| ebs (0.118301) |