Ss1.1-Tra1-TCH01C110097.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGAGGAGGTGGGCCACAGAGGCTCCTCACCACCCAGGCTGCCCCCTGGTGTGCCAGTGA TCAGCCTGGGCCACACCAGGCCCCCAGGGGCAGCCATGGCCAGCACGGAACTAAGTGCCC TCCGTCCCCCGCTGCTGCAACTCTCCACCCTGGGAACTACCCCGCCCCCGCTGGCCCTGC ATTACCACCCTCACCCCTTCCTCAACAGCCTCTACATTGGGCCAGCAGGACCTTTCAGCA TCTTTCCTAGCAGCCGTTTGAAGCGGAGACCAAGCCACTGTGAGCTGGAGCTGGCCGAGG GGCACCAACCCCACAAGGTGGCCCGGCGCGTGTTCACCAACAGCCGGGAGCGCTGGCGGC AGCAGAACGTGAACGGTGCTTTCGCCGAGCTCAGGAAGCTGCTGCCAACGCACCCGCCCG ACCGGAAGCTGAGCAAGAACGAGGTGCTCCGCCTTGCCATGAAATACATTGGCTTCCTGG TGCGGCTGCTACGCGACCAGAGCAGCCCGCCGCCGGGCGCATGCCGCTGTCCCGTTCCGT TAAACTCAACAACGCACCGAGGGCTGGACGACGGTGCAAGTGCAGGATATTTAATTGATT CATAAACTTATGCGCGCCCGCAGCCTGCGCCGGTAGAACGTACTTTATAATGTAAGAAGC ACCAGGGTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGAGGAGGTGGGCCACAGAGGCTCCTCACCACCCAGGCTGCCCCCTGGTGTGCCAGTGA TCAGCCTGGGCCACACCAGGCCCCCAGGGGCAGCCATGGCCAGCACGGAACTAAGTGCCC TCCGTCCCCCGCTGCTGCAACTCTCCACCCTGGGAACTACCCCGCCCCCGCTGGCCCTGC ATTACCACCCTCACCCCTTCCTCAACAGCCTCTACATTGGGCCAGCAGGACCTTTCAGCA TCTTTCCTAGCAGCCGTTTGAAGCGGAGACCAAGCCACTGTGAGCTGGAGCTGGCCGAGG GGCACCAACCCCACAAGGTGGCCCGGCGCGTGTTCACCAACAGCCGGGAGCGCTGGCGGC AGCAGAACGTGAACGGTGCTTTCGCCGAGCTCAGGAAGCTGCTGCCAACGCACCCGCCCG ACCGGAAGCTGAGCAAGAACGAGGTGCTCCGCCTTGCCATGAAATACATTGGCTTCCTGG TGCGGCTGCTACGCGACCAGAGCAGCCCGCCGCCGGGCGCATGCCGCTGTCCCGTTCCGT TAAACTCAACAACGCACCGAGGGCTGGACGACGGTGCAAGTGCAGGATATTTAATTGATT CATAAACTTATGCGCGCCCGCAGCCTGCGCCGGTAGAACGTACTTTATAATGTAAGAAGC ACCAGGGTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 3-158, - strand, RNAz p=0.911919 | |
| 300-458, - strand, RNAz p=0.939412 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-158, - strand, RNAz p=0.911919 | |
| 300-458, - strand, RNAz p=0.939412 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 3-208, gnl|bosTau2|chr7 (9302593-9302385) | |
| 3-208, gnl|Hg17|chr19 (13072859-13072651) | |
| 3-208, gnl|Mm7|chr8 (83287605-83287810) | |
| 300-574, gnl|bosTau2|chr7 (9301131-9300857) | |
| 300-574, gnl|Hg17|chr19 (13071549-13071275) | |
| 300-574, gnl|Mm7|chr8 (83288709-83288983) | |
| 314-500, gnl|bosTau2|chr27 (16672093-16671907) | |
| 314-500, gnl|canFam2|chr15 (16462503-16462277) | |
| 314-500, gnl|danRer3|chr22 (13938505-13938725) | |
| 314-500, gnl|dasNov1|scaffold_119732 (2730-2920) | |
| 314-500, gnl|echTel1|scaffold_314835 (43730-43498) | |
| 314-500, gnl|fr1|chrUn (222319486-222319712) | |
| 314-500, gnl|galGal2|chrZ (26859697-26859477) | |
| 314-500, gnl|hg17|chr1 (47397648-47397874) | |
| 314-500, gnl|Hg17|chr1 (47397856-47397670) | |
| 314-500, gnl|loxAfr1|scaffold_10328 (231-463) | |
| 314-500, gnl|mm7|chr4 (114444936-114444710) | |
| 314-500, gnl|Mm7|chr4 (114444726-114444912) | |
| 314-500, gnl|monDom2|scaffold_70 (5714278-5714052) | |
| 314-500, gnl|oryCun1|scaffold_9212 (1141-915) | |
| 314-500, gnl|panTro1|chr1 (45600388-45600614) | |
| 314-500, gnl|rheMac2|chr1 (50044496-50044722) | |
| 314-500, gnl|rn3|chr5 (135446876-135446650) | |
| 314-500, gnl|tetNig1|chr15 (5685347-5685132) | |
| 314-500, gnl|xenTro1|scaffold_14 (1925498-1925276) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-208, gnl|bosTau2|chr7 (9302593-9302385) | |
| 3-208, gnl|Hg17|chr19 (13072859-13072651) | |
| 3-208, gnl|Mm7|chr8 (83287605-83287810) | |
| 300-574, gnl|bosTau2|chr7 (9301131-9300857) | |
| 300-574, gnl|Hg17|chr19 (13071549-13071275) | |
| 300-574, gnl|Mm7|chr8 (83288709-83288983) | |
| 314-500, gnl|bosTau2|chr27 (16672093-16671907) | |
| 314-500, gnl|canFam2|chr15 (16462503-16462277) | |
| 314-500, gnl|danRer3|chr22 (13938505-13938725) | |
| 314-500, gnl|dasNov1|scaffold_119732 (2730-2920) | |
| 314-500, gnl|echTel1|scaffold_314835 (43730-43498) | |
| 314-500, gnl|fr1|chrUn (222319486-222319712) | |
| 314-500, gnl|galGal2|chrZ (26859697-26859477) | |
| 314-500, gnl|hg17|chr1 (47397648-47397874) | |
| 314-500, gnl|Hg17|chr1 (47397856-47397670) | |
| 314-500, gnl|loxAfr1|scaffold_10328 (231-463) | |
| 314-500, gnl|mm7|chr4 (114444936-114444710) | |
| 314-500, gnl|Mm7|chr4 (114444726-114444912) | |
| 314-500, gnl|monDom2|scaffold_70 (5714278-5714052) | |
| 314-500, gnl|oryCun1|scaffold_9212 (1141-915) | |
| 314-500, gnl|panTro1|chr1 (45600388-45600614) | |
| 314-500, gnl|rheMac2|chr1 (50044496-50044722) | |
| 314-500, gnl|rn3|chr5 (135446876-135446650) | |
| 314-500, gnl|tetNig1|chr15 (5685347-5685132) | |
| 314-500, gnl|xenTro1|scaffold_14 (1925498-1925276) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |