Ss1.1-Tra1-TCH01C120065.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGCGGTACGGTCAGCCGCCAAACGGGGCTCGGGGCTGAGGGTTGGCTTCAAGGAGTGG CGCTGAGTGGGGTTGGGGTGGGCCGCCAGTTGAGGCGGCCTCAGAGCGTGCGGCGACGCC CCTGAGTGATCATGGCAGCGGCGGACGAGCTGGCCTTCCACGCAGAGTTCGAGGAAGCCA CTAATTTGCTGGCCCAGACCCCAGAAGCGACCACCACCAGAAGTGATCAGTTGACCCCCC AGGGGCATGTGGCTGTGGCCATGGGCTCAGGGGGCAGCTATGGAACTGAGGATGATGCAG AGGAGAGTGACAAGGCAGCGCTCCTACAGGAGGAGAAGCAGCAGCCTGGTTTCTGGACCT TTGGCTACTATCAGACATTCTTTGACGTGGACACTTCACAGGTCCTGGACCGGATTAAAG GCTCACTGCTGCCCCGGCCTGGCCACAACTTTGTACGGCACCATCTGCGGAATCGGCCAG ACCTGTATGGCCCCTTCTGGATCTGTGCCACACTGGCCTTTGTCTTGGCTGTCACCGGCA ATCTGACCCTGGTGCTGGCCCAGAAGAGGGACCCTTCCATCCACTACAGCCCGCAGTTCC ACAAAGTGACCGTGGCTGGCATCACCATCTACTGCTACGCATGGCTGGTGCCGCTGGCAC TGTGGGGCTTCTTGCAGTGGCGCAAAGGTGTCCGAGAGCGCATGGGGCCCTACACCTTCC TGGAGACAGTGTGCGTCTACGGCTACTCCCTGTTTGTCTTCATCCCCACTGTGGTCTTAT GGCTCGTCCCCATCCCGTGGCTGCAGTGGCTCTTTGGGGCACTTGCCCTGGCCCTCTCAG CCGCTGGCCTGGTGTTCACCCTCTGGCCGGTGGTCCGCGAGGACACCAGGTTGGCAGCCG CAGTGCTGCTCTCTGCCGTGGTGCTGCTCCACGCCCTCCTGGCCATGGGCTGTAAGTTTT ACTTCTTCCAGCCGCTGCCTCCGGAGCTCCTAGAACCTCCCCACCAGGCCACAGCCCAGC CCCCAAACATACCGCTGCCACCCACCCTACCAAAGTCCATGGCGACCTAGGAAGGCTGGA GCCCACAGGCCCATCAGGAGGGGATGCCTCTGCCTGCCCTGCCCCCAAGACGGTGACTGA AGGCACCCCTGGAACCTCAAGATCATTCTGCTACTTTCCAGACTTTTCTTACAAAGCAAA CACTTTTATTTTCTATGCAAAGGTGATTCAGAGAATTTATATAAAGGCGGGAAGAGGGAC AGAGCAGGGAGCTTCCAGGGCAGCCATCGCCCCATGGGCTACCTGCCAGGACGGGTGGGC AGCAAAAGGGCCACCCCAGCCTTGGCTGTGCCTGCTCTCACTGGGGTGCCCAGCTTGTGG GCCTTGGGCCTAGCTCCACCACATCTGAGTTTGCGGGTGTTAGAAACGGGGAGAAGTAGA AGAAAACTGCCTGTGCTGAAACATACATTTCCTTGTTTATTTTGCTTTTCTTTTTTGGAG GGGTCCCTGCAAGGCCCCTTCCCAGACTGGGGAGGGACCAAAATGCCATTATAGTGGGGA CTTGAGCATCTACAAATACTGAAGGGGACACACAGGCCTAACATTAGCTACACGGAAAAA GGACGCCTTTCACCACAGACCCTTGAGGTTTGTGTCTGCCCCAAGTGGCTGATGGTGACC CTTCCCTCCAGGGCCCACAGGGCCACCTGTTCTAGCTCTGGGTGCGGGTGGGGGTGGGAG ACCTGCAGGGGCTCAGGGACAGGACAGCAGCAAGAGGCAGGGGCTGAGGACGGAGGGCCT TCCCGACAGCCGGGTGGGTTGTACATTCAAGTGTGAGGTGAACCCTTTGGTGGGAGGGGG CCGAGGGGTCCAGAGGCCCAGCCCTGCCCCATCCTGCAGACCCGCAGGGCTGCCCCTCGC CACTGAGCCTCTGAGTCGGGGAGAGGGGCTGCTGGCTCGGCCCGGCCGGCCTGATTTCTC AGAGGGTCTGTGGATTGACACTGGTTCTTTTCGTAAAAAAATAAAATTAAAAAAAGCAGC ATGTCACGCCCATTGTGACCAAGGCCTGGTAGTTGAAGGGGAGGCCCCGCCCAGCCAGGA GAGCCTTCCTGCTGGAGACAGAGGAGGGCAGGCCCCAGGGACCCGGCAGCAGCTGCTTCC ATTCCCCCGCCAGGCCTGCAGCTGTCAGGCCCGGACACGCCTGTTACAGAAGATGTCAAG CCCAGGTCAGGGTGGAGAGGATAGGAGGGGGCAACAGGGCTCCCATGACATGATCGTGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGCGGTACGGTCAGCCGCCAAACGGGGCTCGGGGCTGAGGGTTGGCTTCAAGGAGTGG CGCTGAGTGGGGTTGGGGTGGGCCGCCAGTTGAGGCGGCCTCAGAGCGTGCGGCGACGCC CCTGAGTGATCATGGCAGCGGCGGACGAGCTGGCCTTCCACGCAGAGTTCGAGGAAGCCA CTAATTTGCTGGCCCAGACCCCAGAAGCGACCACCACCAGAAGTGATCAGTTGACCCCCC AGGGGCATGTGGCTGTGGCCATGGGCTCAGGGGGCAGCTATGGAACTGAGGATGATGCAG AGGAGAGTGACAAGGCAGCGCTCCTACAGGAGGAGAAGCAGCAGCCTGGTTTCTGGACCT TTGGCTACTATCAGACATTCTTTGACGTGGACACTTCACAGGTCCTGGACCGGATTAAAG GCTCACTGCTGCCCCGGCCTGGCCACAACTTTGTACGGCACCATCTGCGGAATCGGCCAG ACCTGTATGGCCCCTTCTGGATCTGTGCCACACTGGCCTTTGTCTTGGCTGTCACCGGCA ATCTGACCCTGGTGCTGGCCCAGAAGAGGGACCCTTCCATCCACTACAGCCCGCAGTTCC ACAAAGTGACCGTGGCTGGCATCACCATCTACTGCTACGCATGGCTGGTGCCGCTGGCAC TGTGGGGCTTCTTGCAGTGGCGCAAAGGTGTCCGAGAGCGCATGGGGCCCTACACCTTCC TGGAGACAGTGTGCGTCTACGGCTACTCCCTGTTTGTCTTCATCCCCACTGTGGTCTTAT GGCTCGTCCCCATCCCGTGGCTGCAGTGGCTCTTTGGGGCACTTGCCCTGGCCCTCTCAG CCGCTGGCCTGGTGTTCACCCTCTGGCCGGTGGTCCGCGAGGACACCAGGTTGGCAGCCG CAGTGCTGCTCTCTGCCGTGGTGCTGCTCCACGCCCTCCTGGCCATGGGCTGTAAGTTTT ACTTCTTCCAGCCGCTGCCTCCGGAGCTCCTAGAACCTCCCCACCAGGCCACAGCCCAGC CCCCAAACATACCGCTGCCACCCACCCTACCAAAGTCCATGGCGACCTAGGAAGGCTGGA GCCCACAGGCCCATCAGGAGGGGATGCCTCTGCCTGCCCTGCCCCCAAGACGGTGACTGA AGGCACCCCTGGAACCTCAAGATCATTCTGCTACTTTCCAGACTTTTCTTACAAAGCAAA CACTTTTATTTTCTATGCAAAGGTGATTCAGAGAATTTATATAAAGGCGGGAAGAGGGAC AGAGCAGGGAGCTTCCAGGGCAGCCATCGCCCCATGGGCTACCTGCCAGGACGGGTGGGC AGCAAAAGGGCCACCCCAGCCTTGGCTGTGCCTGCTCTCACTGGGGTGCCCAGCTTGTGG GCCTTGGGCCTAGCTCCACCACATCTGAGTTTGCGGGTGTTAGAAACGGGGAGAAGTAGA AGAAAACTGCCTGTGCTGAAACATACATTTCCTTGTTTATTTTGCTTTTCTTTTTTGGAG GGGTCCCTGCAAGGCCCCTTCCCAGACTGGGGAGGGACCAAAATGCCATTATAGTGGGGA CTTGAGCATCTACAAATACTGAAGGGGACACACAGGCCTAACATTAGCTACACGGAAAAA GGACGCCTTTCACCACAGACCCTTGAGGTTTGTGTCTGCCCCAAGTGGCTGATGGTGACC CTTCCCTCCAGGGCCCACAGGGCCACCTGTTCTAGCTCTGGGTGCGGGTGGGGGTGGGAG ACCTGCAGGGGCTCAGGGACAGGACAGCAGCAAGAGGCAGGGGCTGAGGACGGAGGGCCT TCCCGACAGCCGGGTGGGTTGTACATTCAAGTGTGAGGTGAACCCTTTGGTGGGAGGGGG CCGAGGGGTCCAGAGGCCCAGCCCTGCCCCATCCTGCAGACCCGCAGGGCTGCCCCTCGC CACTGAGCCTCTGAGTCGGGGAGAGGGGCTGCTGGCTCGGCCCGGCCGGCCTGATTTCTC AGAGGGTCTGTGGATTGACACTGGTTCTTTTCGTAAAAAAATAAAATTAAAAAAAGCAGC ATGTCACGCCCATTGTGACCAAGGCCTGGTAGTTGAAGGGGAGGCCCCGCCCAGCCAGGA GAGCCTTCCTGCTGGAGACAGAGGAGGGCAGGCCCCAGGGACCCGGCAGCAGCTGCTTCC ATTCCCCCGCCAGGCCTGCAGCTGTCAGGCCCGGACACGCCTGTTACAGAAGATGTCAAG CCCAGGTCAGGGTGGAGAGGATAGGAGGGGGCAACAGGGCTCCCATGACATGATCGTGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 194-2197, + strand, RNAz p=0.989734 | |
| 1467-1576, - strand, RNAz p=0.99522 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 194-2197, + strand, RNAz p=0.989734 | |
| 1467-1576, - strand, RNAz p=0.99522 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_199141, - |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 154-314, gnl|bosTau2|chr7 (10030474-10030314) | |
| 154-314, gnl|canFam2|chr20 (53331257-53330968) | |
| 154-314, gnl|hg17|chr19 (10899378-10899661) | |
| 154-314, gnl|Hg17|chr19 (10899647-10899481) | |
| 154-314, gnl|loxAfr1|scaffold_114486 (1202-1491) | |
| 154-314, gnl|mm7|chr9 (21469662-21469937) | |
| 154-314, gnl|Mm7|chr9 (21469926-21469763) | |
| 154-314, gnl|monDom2|scaffold_106 (2831744-2832006) | |
| 154-314, gnl|oryCun1|scaffold_197223 (9233-9528) | |
| 154-314, gnl|panTro1|chr20_random (598400-598683) | |
| 154-314, gnl|rheMac2|chr19 (10741880-10742163) | |
| 154-314, gnl|rn3|chr8 (20697725-20698000) | |
| 154-314, gnl|xenTro1|scaffold_1142 (131641-131393) | |
| 605-775, gnl|bosTau2|chr7 (10027469-10027299) | |
| 605-775, gnl|Hg17|chr19 (10895677-10895507) | |
| 605-775, gnl|Mm7|chr9 (21467975-21467805) | |
| 955-1089, gnl|bosTau2|chr7 (10026955-10026822) | |
| 955-1089, gnl|canFam2|chr20 (53334451-53334231) | |
| 955-1089, gnl|dasNov1|scaffold_156377 (5131-4894) | |
| 955-1089, gnl|echTel1|scaffold_136942 (725-477) | |
| 955-1089, gnl|fr1|chrUn (282957668-282957449) | |
| 955-1089, gnl|hg17|chr19 (10894907-10895146) | |
| 955-1089, gnl|Hg17|chr19 (10895085-10894947) | |
| 955-1089, gnl|loxAfr1|scaffold_31057 (580-335) | |
| 955-1089, gnl|mm7|chr9 (21467289-21467518) | |
| 955-1089, gnl|Mm7|chr9 (21467458-21467330) | |
| 955-1089, gnl|monDom2|scaffold_106 (2830095-2830377) | |
| 955-1089, gnl|oryCun1|scaffold_197223 (7639-7885) | |
| 955-1089, gnl|panTro1|chr20_random (593917-594156) | |
| 955-1089, gnl|rheMac2|chr19 (10738654-10738906) | |
| 955-1089, gnl|rn3|chr8 (20695279-20695502) | |
| 1121-1303, gnl|bosTau2|chr7 (10026706-10026524) | |
| 1121-1303, gnl|canFam2|chr20 (53334886-53334452) | |
| 1121-1303, gnl|dasNov1|scaffold_156377 (5604-5132) | |
| 1121-1303, gnl|echTel1|scaffold_136942 (1095-726) | |
| 1121-1303, gnl|hg17|chr19 (10894458-10894906) | |
| 1121-1303, gnl|Hg17|chr19 (10894850-10894566) | |
| 1121-1303, gnl|loxAfr1|scaffold_31057 (1055-581) | |
| 1121-1303, gnl|mm7|chr9 (21466906-21467288) | |
| 1121-1303, gnl|Mm7|chr9 (21467254-21467039) | |
| 1121-1303, gnl|monDom2|scaffold_106 (2829560-2830094) | |
| 1121-1303, gnl|oryCun1|scaffold_197223 (7310-7638) | |
| 1121-1303, gnl|panTro1|chr20_random (593468-593916) | |
| 1121-1303, gnl|rheMac2|chr19 (10738194-10738653) | |
| 1121-1303, gnl|rn3|chr8 (20694868-20695278) | |
| 1467-2280, gnl|bosTau2|chr7 (10026360-10025507) | |
| 1467-2280, gnl|Hg17|chr19 (10894424-10893651) | |
| 1467-2280, gnl|Mm7|chr9 (21466879-21466114) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 154-314, gnl|bosTau2|chr7 (10030474-10030314) | |
| 154-314, gnl|canFam2|chr20 (53331257-53330968) | |
| 154-314, gnl|hg17|chr19 (10899378-10899661) | |
| 154-314, gnl|Hg17|chr19 (10899647-10899481) | |
| 154-314, gnl|loxAfr1|scaffold_114486 (1202-1491) | |
| 154-314, gnl|mm7|chr9 (21469662-21469937) | |
| 154-314, gnl|Mm7|chr9 (21469926-21469763) | |
| 154-314, gnl|monDom2|scaffold_106 (2831744-2832006) | |
| 154-314, gnl|oryCun1|scaffold_197223 (9233-9528) | |
| 154-314, gnl|panTro1|chr20_random (598400-598683) | |
| 154-314, gnl|rheMac2|chr19 (10741880-10742163) | |
| 154-314, gnl|rn3|chr8 (20697725-20698000) | |
| 154-314, gnl|xenTro1|scaffold_1142 (131641-131393) | |
| 605-775, gnl|bosTau2|chr7 (10027469-10027299) | |
| 605-775, gnl|Hg17|chr19 (10895677-10895507) | |
| 605-775, gnl|Mm7|chr9 (21467975-21467805) | |
| 955-1089, gnl|bosTau2|chr7 (10026955-10026822) | |
| 955-1089, gnl|canFam2|chr20 (53334451-53334231) | |
| 955-1089, gnl|dasNov1|scaffold_156377 (5131-4894) | |
| 955-1089, gnl|echTel1|scaffold_136942 (725-477) | |
| 955-1089, gnl|fr1|chrUn (282957668-282957449) | |
| 955-1089, gnl|hg17|chr19 (10894907-10895146) | |
| 955-1089, gnl|Hg17|chr19 (10895085-10894947) | |
| 955-1089, gnl|loxAfr1|scaffold_31057 (580-335) | |
| 955-1089, gnl|mm7|chr9 (21467289-21467518) | |
| 955-1089, gnl|Mm7|chr9 (21467458-21467330) | |
| 955-1089, gnl|monDom2|scaffold_106 (2830095-2830377) | |
| 955-1089, gnl|oryCun1|scaffold_197223 (7639-7885) | |
| 955-1089, gnl|panTro1|chr20_random (593917-594156) | |
| 955-1089, gnl|rheMac2|chr19 (10738654-10738906) | |
| 955-1089, gnl|rn3|chr8 (20695279-20695502) | |
| 1121-1303, gnl|bosTau2|chr7 (10026706-10026524) | |
| 1121-1303, gnl|canFam2|chr20 (53334886-53334452) | |
| 1121-1303, gnl|dasNov1|scaffold_156377 (5604-5132) | |
| 1121-1303, gnl|echTel1|scaffold_136942 (1095-726) | |
| 1121-1303, gnl|hg17|chr19 (10894458-10894906) | |
| 1121-1303, gnl|Hg17|chr19 (10894850-10894566) | |
| 1121-1303, gnl|loxAfr1|scaffold_31057 (1055-581) | |
| 1121-1303, gnl|mm7|chr9 (21466906-21467288) | |
| 1121-1303, gnl|Mm7|chr9 (21467254-21467039) | |
| 1121-1303, gnl|monDom2|scaffold_106 (2829560-2830094) | |
| 1121-1303, gnl|oryCun1|scaffold_197223 (7310-7638) | |
| 1121-1303, gnl|panTro1|chr20_random (593468-593916) | |
| 1121-1303, gnl|rheMac2|chr19 (10738194-10738653) | |
| 1121-1303, gnl|rn3|chr8 (20694868-20695278) | |
| 1467-2280, gnl|bosTau2|chr7 (10026360-10025507) | |
| 1467-2280, gnl|Hg17|chr19 (10894424-10893651) | |
| 1467-2280, gnl|Mm7|chr9 (21466879-21466114) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| cbr (0.767853) | |
| cov (0.660764) | |
| pla (0.401016) | |
| eru (0.360144) | |
| csp (0.322373) | |
| nca (0.273748) | |
| ese (0.253004) | |
| nms (0.213858) | |
| cty (0.20816) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| che (0.136314) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (0.767853) | |
| cov (0.660764) | |
| pla (0.401016) | |
| eru (0.360144) | |
| csp (0.322373) | |
| nca (0.273748) | |
| ese (0.253004) | |
| nms (0.213858) | |
| cty (0.20816) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| che (0.136314) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) |