Ss1.1-Tra1-TCH01D010082.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGAGGCGCCTTGTCGGGGTGGGGCGAGCCTGAGGAAACGGCCCAGGGTCCGGTCGCCC GCCCTATCAGTGCCTCCTCGCCGTCCCCGCCCCTCCCCCACCAACCCAGCGACGGGGATG CAGACCTCAGAGCGTGAGGTGTATGGGCTGGAGGTGAGCCCCAGCGTGAATCCTGAGGCT TCGCTGGAGTCTCCTCCTGCTCCTACCAAGTCCCCAGCATTTGATCTTTTCAACTTGGTC GTGTCCTATAAGAGGCTGGAGATCTACTTGGAACCCTTGAAAGATGCTGGTGATGGTGTC CGGTATTTGCTCAGGTGGCAGATGCCATTGTGTTCCTTGTTGACCTGCCTGGGCCTCAAC ATCTTGTTCCTCACCTTGAACGAGGGTGCATGGTACTCAGTGGGCGCCCTGATGATTTCA GTACCCGCCCTGCTGGGCTACCTGCAGGAGGTCTGCCGGGCACGGCTGCCCGAGTCTGAG CTGATGCGGAGGAAGTACCATAGCGTGAGGCAGGAGGACCTGCAGAGAGTGCGCCTGTCC CGTCCCGAGGCCGTGGCTGAGGTGAAGAGCTTCCTGATCCAACTGGAGGCCTTCCTGAGC CGCCTGTGCTGCACCTGCGAAGCCGCCTACCGCGTGCTGCATTGGGAGAACCCCACCGTG TCTTCGCAGTTCTATGGGGCTCTTCTGGGCACGGTTTGCATGCTATATCTGCTGCCGCTG TGCTGGGTCCTTGCCCTGTTAAACAGCACGCTCTTCCTGGGGAATGTGGAGTTCTTCCGA GTGGTGTCCGAATATCGGGCATCTCTGCAGCGACGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGAGGCGCCTTGTCGGGGTGGGGCGAGCCTGAGGAAACGGCCCAGGGTCCGGTCGCCC GCCCTATCAGTGCCTCCTCGCCGTCCCCGCCCCTCCCCCACCAACCCAGCGACGGGGATG CAGACCTCAGAGCGTGAGGTGTATGGGCTGGAGGTGAGCCCCAGCGTGAATCCTGAGGCT TCGCTGGAGTCTCCTCCTGCTCCTACCAAGTCCCCAGCATTTGATCTTTTCAACTTGGTC GTGTCCTATAAGAGGCTGGAGATCTACTTGGAACCCTTGAAAGATGCTGGTGATGGTGTC CGGTATTTGCTCAGGTGGCAGATGCCATTGTGTTCCTTGTTGACCTGCCTGGGCCTCAAC ATCTTGTTCCTCACCTTGAACGAGGGTGCATGGTACTCAGTGGGCGCCCTGATGATTTCA GTACCCGCCCTGCTGGGCTACCTGCAGGAGGTCTGCCGGGCACGGCTGCCCGAGTCTGAG CTGATGCGGAGGAAGTACCATAGCGTGAGGCAGGAGGACCTGCAGAGAGTGCGCCTGTCC CGTCCCGAGGCCGTGGCTGAGGTGAAGAGCTTCCTGATCCAACTGGAGGCCTTCCTGAGC CGCCTGTGCTGCACCTGCGAAGCCGCCTACCGCGTGCTGCATTGGGAGAACCCCACCGTG TCTTCGCAGTTCTATGGGGCTCTTCTGGGCACGGTTTGCATGCTATATCTGCTGCCGCTG TGCTGGGTCCTTGCCCTGTTAAACAGCACGCTCTTCCTGGGGAATGTGGAGTTCTTCCGA GTGGTGTCCGAATATCGGGCATCTCTGCAGCGACGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 155-274, - strand, RNAz p=0.639144 | |
| 385-503, + strand, RNAz p=0.641195 | |
| 385-503, - strand, RNAz p=0.641195 | |
| 385-481, + strand, RNAz p=0.60149 | |
| 385-481, - strand, RNAz p=0.60149 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 155-274, - strand, RNAz p=0.639144 | |
| 385-503, + strand, RNAz p=0.641195 | |
| 385-503, - strand, RNAz p=0.641195 | |
| 385-481, + strand, RNAz p=0.60149 | |
| 385-481, - strand, RNAz p=0.60149 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 116-356, gnl|bosTau2|chr26 (10406987-10406749) | |
| 116-356, gnl|Hg17|chr10 (99488223-99488459) | |
| 116-356, gnl|Mm7|chr19 (42065344-42065582) | |
| 385-572, gnl|bosTau2|chr26 (10400666-10400479) | |
| 385-572, gnl|canFam2|chr28 (13971131-13971342) | |
| 385-572, gnl|dasNov1|scaffold_64253 (4378-4588) | |
| 385-572, gnl|echTel1|scaffold_303844 (4722-4933) | |
| 385-572, gnl|fr1|chrUn (205820170-205819958) | |
| 385-572, gnl|galGal2|chr6 (21444168-21443970) | |
| 385-572, gnl|hg17|chr10 (99494462-99494673) | |
| 385-572, gnl|Hg17|chr10 (99494475-99494662) | |
| 385-572, gnl|loxAfr1|scaffold_79808 (28177-27967) | |
| 385-572, gnl|mm7|chr19 (42073076-42073300) | |
| 385-572, gnl|Mm7|chr19 (42073087-42073289) | |
| 385-572, gnl|monDom2|scaffold_14 (24729006-24728797) | |
| 385-572, gnl|oryCun1|scaffold_84239 (7105-6893) | |
| 385-572, gnl|panTro1|chr8 (101230877-101231088) | |
| 385-572, gnl|rheMac2|chr9 (97338940-97339151) | |
| 385-572, gnl|rn3|chr1 (248935361-248935150) | |
| 385-572, gnl|tetNig1|chr18 (1942935-1942744) | |
| 669-781, gnl|bosTau2|chr26 (10396586-10396474) | |
| 669-781, gnl|canFam2|chr28 (13975330-13975452) | |
| 669-781, gnl|dasNov1|scaffold_87213 (3458-3580) | |
| 669-781, gnl|hg17|chr10 (99499217-99499339) | |
| 669-781, gnl|Hg17|chr10 (99499221-99499333) | |
| 669-781, gnl|loxAfr1|scaffold_46327 (4445-4567) | |
| 669-781, gnl|mm7|chr19 (42076454-42076576) | |
| 669-781, gnl|Mm7|chr19 (42076458-42076570) | |
| 669-781, gnl|monDom2|scaffold_14 (24728160-24728038) | |
| 669-781, gnl|oryCun1|scaffold_84239 (1991-1869) | |
| 669-781, gnl|panTro1|chr8 (101235664-101235786) | |
| 669-781, gnl|rheMac2|chr9 (97344272-97344394) | |
| 669-781, gnl|rn3|chr1 (248931812-248931690) | |
| 669-781, gnl|tetNig1|chr18 (1941130-1941008) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 116-356, gnl|bosTau2|chr26 (10406987-10406749) | |
| 116-356, gnl|Hg17|chr10 (99488223-99488459) | |
| 116-356, gnl|Mm7|chr19 (42065344-42065582) | |
| 385-572, gnl|bosTau2|chr26 (10400666-10400479) | |
| 385-572, gnl|canFam2|chr28 (13971131-13971342) | |
| 385-572, gnl|dasNov1|scaffold_64253 (4378-4588) | |
| 385-572, gnl|echTel1|scaffold_303844 (4722-4933) | |
| 385-572, gnl|fr1|chrUn (205820170-205819958) | |
| 385-572, gnl|galGal2|chr6 (21444168-21443970) | |
| 385-572, gnl|hg17|chr10 (99494462-99494673) | |
| 385-572, gnl|Hg17|chr10 (99494475-99494662) | |
| 385-572, gnl|loxAfr1|scaffold_79808 (28177-27967) | |
| 385-572, gnl|mm7|chr19 (42073076-42073300) | |
| 385-572, gnl|Mm7|chr19 (42073087-42073289) | |
| 385-572, gnl|monDom2|scaffold_14 (24729006-24728797) | |
| 385-572, gnl|oryCun1|scaffold_84239 (7105-6893) | |
| 385-572, gnl|panTro1|chr8 (101230877-101231088) | |
| 385-572, gnl|rheMac2|chr9 (97338940-97339151) | |
| 385-572, gnl|rn3|chr1 (248935361-248935150) | |
| 385-572, gnl|tetNig1|chr18 (1942935-1942744) | |
| 669-781, gnl|bosTau2|chr26 (10396586-10396474) | |
| 669-781, gnl|canFam2|chr28 (13975330-13975452) | |
| 669-781, gnl|dasNov1|scaffold_87213 (3458-3580) | |
| 669-781, gnl|hg17|chr10 (99499217-99499339) | |
| 669-781, gnl|Hg17|chr10 (99499221-99499333) | |
| 669-781, gnl|loxAfr1|scaffold_46327 (4445-4567) | |
| 669-781, gnl|mm7|chr19 (42076454-42076576) | |
| 669-781, gnl|Mm7|chr19 (42076458-42076570) | |
| 669-781, gnl|monDom2|scaffold_14 (24728160-24728038) | |
| 669-781, gnl|oryCun1|scaffold_84239 (1991-1869) | |
| 669-781, gnl|panTro1|chr8 (101235664-101235786) | |
| 669-781, gnl|rheMac2|chr9 (97344272-97344394) | |
| 669-781, gnl|rn3|chr1 (248931812-248931690) | |
| 669-781, gnl|tetNig1|chr18 (1941130-1941008) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| cty (0.10408) |