Non-Coding RNA Search

Ss1.1-Tra1-TCH01D020001.5

Sequence:


               
               ATGCTTTGCTCCCGCATCCAGGAGCAATCCCAGCTCATCTGCATCCTGAAGCGGAGGTCA
GACGAAGCCCTGGAGCGCTGCCAGGTCCTGGAGCTGCTCAACGCAGAACTGGAGGAGAAG
AGGATGCTGGAGGCCGAGAAGCTGAAAGCCAAGAGTGAGCATGCCGAGAAGCTGGAGGAA
CGCTTTATGACCCTGGCAGCCAACCACGAGTTGATGATCCGCTTCAAGGATGAACACAAG
AATCAGAACATCAAGCTGAGAGAGGAGAACGAGAAGCTGAGGCTGGAGAATGACCACCTC
TTCAGCCAGGCTTTGAAGGACCAGGAGGTCAAAGTAGCTCAGCTCACCGCCCAGAGCGAG
GCCCTGGCCAAGGAGCTGGAGACTCTGAAACAGCGGAGTGCTCAGGATGCTTGCCAGGCG
CAGGCCCGAGAGAAGGAGCTGCTGCAGCTGCAGAGCCTCAAGCAGCAGCACCAGCAGGCC
ACGGAGCAGATGGCCAAGGCCGAGCAGGCACACAGCCTACTGAACCAGGAGCTGCAGGCC
AGGCTGCAGACCGTCAGTCGTGAGAAAGAGGAGCTATTGCAGTTGTCCATGGAGAGGGGC
AAGGTGCTCCAGAACAAGCAAGCAGAGATACGCCAGCTTGAGGATAAGCTGGAGACAGCA
GATGTGGCCAGGAGGCACGCAGTGGAGCGGTTTGAACAAGAGGCAGTGGCCGTGGACAGT
AACTTGAGAGTTCGGGAGCTTCAGCGCAGGGTGGATGGGATCCAGAAGGCCTATGATGAA
CTCAGGCTGCAGTCTGAAGCCTTCAAAAGGCACAGCCTGGATCTCTTAAGCAAAGAGAGA
GAGCTCAATGCCAAACTTCGCCATCTCTTTCCATAAGGAAGCTTCTGCTTCCTCTGGCCT
CTCACTTAGACTTCAAGTATTTGTGCCTTAGCATAATGGCAAGAGTAAAGATGGTATTCC
ATTTATTATACTTTCAAGTACAAAAGACCCCTCAAAGAAAAGCTACTTTACTGTGATGTT
GTTGCTATTGTAAGGATAACACTAATTTTAGTGCCACCACCTAGAATACACTATATTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCTTTGCTCCCGCATCCAGGAGCAATCCCAGCTCATCTGCATCCTGAAGCGGAGGTCA
GACGAAGCCCTGGAGCGCTGCCAGGTCCTGGAGCTGCTCAACGCAGAACTGGAGGAGAAG
AGGATGCTGGAGGCCGAGAAGCTGAAAGCCAAGAGTGAGCATGCCGAGAAGCTGGAGGAA
CGCTTTATGACCCTGGCAGCCAACCACGAGTTGATGATCCGCTTCAAGGATGAACACAAG
AATCAGAACATCAAGCTGAGAGAGGAGAACGAGAAGCTGAGGCTGGAGAATGACCACCTC
TTCAGCCAGGCTTTGAAGGACCAGGAGGTCAAAGTAGCTCAGCTCACCGCCCAGAGCGAG
GCCCTGGCCAAGGAGCTGGAGACTCTGAAACAGCGGAGTGCTCAGGATGCTTGCCAGGCG
CAGGCCCGAGAGAAGGAGCTGCTGCAGCTGCAGAGCCTCAAGCAGCAGCACCAGCAGGCC
ACGGAGCAGATGGCCAAGGCCGAGCAGGCACACAGCCTACTGAACCAGGAGCTGCAGGCC
AGGCTGCAGACCGTCAGTCGTGAGAAAGAGGAGCTATTGCAGTTGTCCATGGAGAGGGGC
AAGGTGCTCCAGAACAAGCAAGCAGAGATACGCCAGCTTGAGGATAAGCTGGAGACAGCA
GATGTGGCCAGGAGGCACGCAGTGGAGCGGTTTGAACAAGAGGCAGTGGCCGTGGACAGT
AACTTGAGAGTTCGGGAGCTTCAGCGCAGGGTGGATGGGATCCAGAAGGCCTATGATGAA
CTCAGGCTGCAGTCTGAAGCCTTCAAAAGGCACAGCCTGGATCTCTTAAGCAAAGAGAGA
GAGCTCAATGCCAAACTTCGCCATCTCTTTCCATAAGGAAGCTTCTGCTTCCTCTGGCCT
CTCACTTAGACTTCAAGTATTTGTGCCTTAGCATAATGGCAAGAGTAAAGATGGTATTCC
ATTTATTATACTTTCAAGTACAAAAGACCCCTCAAAGAAAAGCTACTTTACTGTGATGTT
GTTGCTATTGTAAGGATAACACTAATTTTAGTGCCACCACCTAGAATACACTATATTTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57102318|ref|XP_533988.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57102318|ref|XP_533988.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               356-474, - strand, RNAz p=0.988668
               

               
               555-914, - strand, RNAz p=0.979707

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               356-474, - strand, RNAz p=0.988668
               

               
               555-914, - strand, RNAz p=0.979707

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               356-1080, gnl|bosTau2|chr29 (4378554-4377820)
               

               
               356-1080, gnl|Hg17|chr11 (85074217-85073490)
               

               
               356-1080, gnl|Mm7|chr7 (86434062-86434776)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               356-1080, gnl|bosTau2|chr29 (4378554-4377820)
               

               
               356-1080, gnl|Hg17|chr11 (85074217-85073490)
               

               
               356-1080, gnl|Mm7|chr7 (86434062-86434776)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ute (0.132784)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)
               

               
               ret (0.128733)

	356-474, - strand, RNAz p=0.988668
	555-914, - strand, RNAz p=0.979707

	356-1080, gnl\|bosTau2\|chr29 (4378554-4377820)
	356-1080, gnl\|Hg17\|chr11 (85074217-85073490)
	356-1080, gnl\|Mm7\|chr7 (86434062-86434776)