Non-Coding RNA Search

Ss1.1-Tra1-TCH01D020010.5

Sequence:


               
               ATTTTCCACTCCTCTACGATTTTCCGCGGTGGTGAACGTTCGCGCTCTGACGTCTCCTGT
GCTCCTAGAGGAGTGACGGACACATCGGCACCGCAGCCATGACTGAGGCTGATGTAAATC
CGAAGGCCTACCCTCTTGCAGATGCCCACCTCACCAAGAAACTATTGGACCTTGTTCAGC
AGTCATGTAACTACAAGCAGCTTCGAAAAGGAGCCAATGAGGCCACCAAAACCCTCAACA
GAGGCATCTCTGAGTTCATTGTGATGGCTGCAGACGCGGAGCCCCTGGAGATTATCCTGC
ACCTCCCACTGCTGTGTGAGGACAAGAACGTGCCCTATGTGTTCGTGCGCTCCAAGCAGG
CCCTGGGGCGAGCCTGTGGGGTCTCCAGGCCTGTCATCGCCTGTTCTGTCACCATCAAAG
AAGGCTCACAGCTGAAGCAGCAGATCCAGTCCATCCAGCAGTCCATCGAACGGCTCTTAG
TCTAAACAGGTGGCCTCTGCCACACTCCCTCCTGGCTCCTCCCCCAGGGCTTGTGTATCA
TATTGTCTGTTAGCATGTAGTATTTCCAGCTGCCTTCTGTTGTTATAAAATATTGTAGTG
CTAAATCTAGTTTTTGATTTGTTTTTGTCTTGTTTTATAGGTTGTCATCCCTTCCCCACC
CCTTTTCCTTATCTCCCCTCCCCTCTCTGTCATCTCATCCTCCCTTTTGGATGGTGAGCT
AATGCCCAGAACAGCTGGAAGCAGGGTGGTGACACCATTCAAAGGCAGGGAAGAGCCCAG
ATAAGAGGTTTGGTTCCAGCTTTCAGGCACCAACTTCCTACTGTGCAGAGTTGATCCCAC
TTTGTATCCTTTGTGCCTGGTATACAGAATCACTGCAGACATGTTTGAACGATTGAGGGG
TTTCCTCTGCTCTCTAGGGCATTATGTATCATTTGGGGAGGAAGCATGTATTCTGTGTGA
TTGTTGGGTATATGTCCTAAGTGTTATTTGCTAATGTACCCCTACTGTTTGCTTTTGGTA
ACGTGATGTTATATTTCACCCCACCTCCCACCTGTGCCCCTGAGGGTGGCAGGGCAGCAG
CATACCAAAGAGATGCGCTGCAGAATTCCAGAGGCAGCCTGGGTGGGTGGGACCTGGGAT
AATTGACCTTGGTCTTGAAGGCATGGCAAGAGATTCTGGAATGAAGGATTCTGGGCCAGT
CAGGGAGAACTGAATGGAAGCTACAGCAGAGATGATAAAATCCGAGAAAACATCCTTTCT
TTGGTGAAGAGATTTCTTCAGTGGACACTAGGTACCAGGTCTGAGGGCCCTTATGCCGAT
TTCCCGCCACAATGTGGGTCAGATGTATGTATTTTCTATCACATCAGAAGAACCGTGCTA
ATGTGTCATTCCTGTGAGCATCCTAATAAATACATATATAGATACCCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTCCACTCCTCTACGATTTTCCGCGGTGGTGAACGTTCGCGCTCTGACGTCTCCTGT
GCTCCTAGAGGAGTGACGGACACATCGGCACCGCAGCCATGACTGAGGCTGATGTAAATC
CGAAGGCCTACCCTCTTGCAGATGCCCACCTCACCAAGAAACTATTGGACCTTGTTCAGC
AGTCATGTAACTACAAGCAGCTTCGAAAAGGAGCCAATGAGGCCACCAAAACCCTCAACA
GAGGCATCTCTGAGTTCATTGTGATGGCTGCAGACGCGGAGCCCCTGGAGATTATCCTGC
ACCTCCCACTGCTGTGTGAGGACAAGAACGTGCCCTATGTGTTCGTGCGCTCCAAGCAGG
CCCTGGGGCGAGCCTGTGGGGTCTCCAGGCCTGTCATCGCCTGTTCTGTCACCATCAAAG
AAGGCTCACAGCTGAAGCAGCAGATCCAGTCCATCCAGCAGTCCATCGAACGGCTCTTAG
TCTAAACAGGTGGCCTCTGCCACACTCCCTCCTGGCTCCTCCCCCAGGGCTTGTGTATCA
TATTGTCTGTTAGCATGTAGTATTTCCAGCTGCCTTCTGTTGTTATAAAATATTGTAGTG
CTAAATCTAGTTTTTGATTTGTTTTTGTCTTGTTTTATAGGTTGTCATCCCTTCCCCACC
CCTTTTCCTTATCTCCCCTCCCCTCTCTGTCATCTCATCCTCCCTTTTGGATGGTGAGCT
AATGCCCAGAACAGCTGGAAGCAGGGTGGTGACACCATTCAAAGGCAGGGAAGAGCCCAG
ATAAGAGGTTTGGTTCCAGCTTTCAGGCACCAACTTCCTACTGTGCAGAGTTGATCCCAC
TTTGTATCCTTTGTGCCTGGTATACAGAATCACTGCAGACATGTTTGAACGATTGAGGGG
TTTCCTCTGCTCTCTAGGGCATTATGTATCATTTGGGGAGGAAGCATGTATTCTGTGTGA
TTGTTGGGTATATGTCCTAAGTGTTATTTGCTAATGTACCCCTACTGTTTGCTTTTGGTA
ACGTGATGTTATATTTCACCCCACCTCCCACCTGTGCCCCTGAGGGTGGCAGGGCAGCAG
CATACCAAAGAGATGCGCTGCAGAATTCCAGAGGCAGCCTGGGTGGGTGGGACCTGGGAT
AATTGACCTTGGTCTTGAAGGCATGGCAAGAGATTCTGGAATGAAGGATTCTGGGCCAGT
CAGGGAGAACTGAATGGAAGCTACAGCAGAGATGATAAAATCCGAGAAAACATCCTTTCT
TTGGTGAAGAGATTTCTTCAGTGGACACTAGGTACCAGGTCTGAGGGCCCTTATGCCGAT
TTCCCGCCACAATGTGGGTCAGATGTATGTATTTTCTATCACATCAGAAGAACCGTGCTA
ATGTGTCATTCCTGTGAGCATCCTAATAAATACATATATAGATACCCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6FHM6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6FHM6_HUMAN

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               351-616, gnl|bosTau2|chr21 (48216191-48215926)
               

               
               351-616, gnl|Hg17|chr22 (40395564-40395306)
               

               
               351-616, gnl|Mm7|chr2 (71256375-71256127)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               351-616, gnl|bosTau2|chr21 (48216191-48215926)
               

               
               351-616, gnl|Hg17|chr22 (40395564-40395306)
               

               
               351-616, gnl|Mm7|chr2 (71256375-71256127)

Expressed library(ies): 53 entry(ies)

More info

Expressed library(ies): 53 entry(ies)

Help | Less info


               
               cbe (1.43541)
               

               
               hyp (0.85702)
               

               
               elu (0.770713)
               

               
               fty (0.703359)
               

               
               fbs (0.701385)
               

               
               cje (0.660939)
               

               
               nco (0.646935)
               

               
               che (0.545256)
               

               
               fhi (0.508733)
               

               
               cki (0.495704)
               

               
               eep (0.490256)
               

               
               cly (0.482567)
               

               
               pgl (0.473934)
               

               
               ece (0.45861)
               

               
               csk (0.422238)
               

               
               cty (0.41632)
               

               
               col (0.390016)
               

               
               nlu (0.383362)
               

               
               sto (0.359648)
               

               
               clu (0.358938)
               

               
               eye (0.341006)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               eje (0.296501)
               

               
               cga (0.279096)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 53 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (1.43541)
               

               
               hyp (0.85702)
               

               
               elu (0.770713)
               

               
               fty (0.703359)
               

               
               fbs (0.701385)
               

               
               cje (0.660939)
               

               
               nco (0.646935)
               

               
               che (0.545256)
               

               
               fhi (0.508733)
               

               
               cki (0.495704)
               

               
               eep (0.490256)
               

               
               cly (0.482567)
               

               
               pgl (0.473934)
               

               
               ece (0.45861)
               

               
               csk (0.422238)
               

               
               cty (0.41632)
               

               
               col (0.390016)
               

               
               nlu (0.383362)
               

               
               sto (0.359648)
               

               
               clu (0.358938)
               

               
               eye (0.341006)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               eje (0.296501)
               

               
               cga (0.279096)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	351-616, gnl\|bosTau2\|chr21 (48216191-48215926)
	351-616, gnl\|Hg17\|chr22 (40395564-40395306)
	351-616, gnl\|Mm7\|chr2 (71256375-71256127)

	cbe (1.43541)
	hyp (0.85702)
	elu (0.770713)
	fty (0.703359)
	fbs (0.701385)
	cje (0.660939)
	nco (0.646935)
	che (0.545256)
	fhi (0.508733)
	cki (0.495704)
	eep (0.490256)
	cly (0.482567)
	pgl (0.473934)
	ece (0.45861)
	csk (0.422238)
	cty (0.41632)
	col (0.390016)
	nlu (0.383362)
	sto (0.359648)
	clu (0.358938)
	eye (0.341006)
	sme (0.305437)
	bfe (0.299715)
	eje (0.296501)
	cga (0.279096)
	ese (0.253004)
	eru (0.240096)
	ebs (0.236602)
	ecc (0.23007)
	jca (0.22792)
	mas (0.210305)
	tes (0.207814)
	nbm (0.198649)
	fcc (0.197785)
	cmu (0.186393)
	nep (0.183925)
	ill (0.175593)
	duo (0.172801)
	cut (0.169924)
	csp (0.161186)
	cli (0.152812)
	lun (0.150489)
	fat (0.147427)
	spl (0.143184)
	pty (0.142714)
	lnt (0.142308)
	ste (0.135208)
	pla (0.133672)
	nmm (0.132802)
	cov (0.132153)
	ova (0.129132)
	jej (0.0989218)
	ldo (0.0970026)