Ss1.1-Tra1-TCH01D020035.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTTCCGTCCTCTCAGCTTCCTTACAGCACCGCCACCTGCCAGAGCTGAGCCTCCCTAG GCTCTGGCCTTAAGTCAGCCATCGATCCTTCTGGCTGCTGACCGTATTTTTCCCCTCCAT GAGAGGAAGGCCGGATCCAGGTCTCTTGAGAGCTGAAGGTTGAGGGCACTGAGCCAACGC ATAGACCCTCACCTCTGCCCTTGAAGACGTTTGTGCCCTCCATGCAGAGCCAAGATGGGG AACAGAAGTGAAGAAGATTATAACTTTGTCTTCAAGGTGGTGCTGATCGGCGAGTCAGGC GTGGGGAAGACCAATCTGCTATCCCGATTCACTCGCAATGAGTTCAGCCACGACAGCCGC ACCACCATCGGGGTTGAGTTTTCCACCCGCACGGTCATGCTGGGCACCGCCGCTGTCAAG GCTCAGATCTGGGACACGGCTGGCCTGGAGCGATACCGAGCCATCACCTCGGCGTACTAT CGTGGTGCAGTGGGGGCCCTACTGGTGTTTGACCTAACCAAGCACCAGACCTATGCCGTG GTGGAGCGCTGGCTGAAGGAGCTCTATGACCATGCTGAGGCCACTATCGTCGTCATGCTC GTGGGTAACAAGAGTGACCTCAGCCAGGCCCGGGAGGTGCCTACGGACGAGGCCCGCATG TTCGCTGAAAACAATGGGCTGCTATTCCTGGAGACCTCAGCCCTGGATTCCACCAATGTT GAGCTGGCCTTTGAGACTGTCCTCAAAGAGATCTTTGCAAAGGTGTCCAAGCAGAGGCAG AACAGCAGCCGGACCAATGCCATCACCCTGGGCAGTGCCCAGCCTGGGCAGGAGCCGGGC CCTGGTGAGAAGAGGGCCTGTTGCATCAGCCTCTGACCTCATCTAGCACCGACCCTGTGC CACCGGCTCTCTGGTTAACAGCACCTCTCAACCCCCAGCTCCGGGAGCTTTCCTTGCCCT GTGGTTCCGGATGACAGAGTGGCCAGTTCCCCTGTTCACAGTCCTTCTGAGCTCTAAGAT CTTTACACCCCCCCACCTCCACCCCCACCCCCACATATCTTTATTATCATTCATCCCCTC ACAGACTAGGGTCTTCAAATAAAGCTGTATTTTGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTTCCGTCCTCTCAGCTTCCTTACAGCACCGCCACCTGCCAGAGCTGAGCCTCCCTAG GCTCTGGCCTTAAGTCAGCCATCGATCCTTCTGGCTGCTGACCGTATTTTTCCCCTCCAT GAGAGGAAGGCCGGATCCAGGTCTCTTGAGAGCTGAAGGTTGAGGGCACTGAGCCAACGC ATAGACCCTCACCTCTGCCCTTGAAGACGTTTGTGCCCTCCATGCAGAGCCAAGATGGGG AACAGAAGTGAAGAAGATTATAACTTTGTCTTCAAGGTGGTGCTGATCGGCGAGTCAGGC GTGGGGAAGACCAATCTGCTATCCCGATTCACTCGCAATGAGTTCAGCCACGACAGCCGC ACCACCATCGGGGTTGAGTTTTCCACCCGCACGGTCATGCTGGGCACCGCCGCTGTCAAG GCTCAGATCTGGGACACGGCTGGCCTGGAGCGATACCGAGCCATCACCTCGGCGTACTAT CGTGGTGCAGTGGGGGCCCTACTGGTGTTTGACCTAACCAAGCACCAGACCTATGCCGTG GTGGAGCGCTGGCTGAAGGAGCTCTATGACCATGCTGAGGCCACTATCGTCGTCATGCTC GTGGGTAACAAGAGTGACCTCAGCCAGGCCCGGGAGGTGCCTACGGACGAGGCCCGCATG TTCGCTGAAAACAATGGGCTGCTATTCCTGGAGACCTCAGCCCTGGATTCCACCAATGTT GAGCTGGCCTTTGAGACTGTCCTCAAAGAGATCTTTGCAAAGGTGTCCAAGCAGAGGCAG AACAGCAGCCGGACCAATGCCATCACCCTGGGCAGTGCCCAGCCTGGGCAGGAGCCGGGC CCTGGTGAGAAGAGGGCCTGTTGCATCAGCCTCTGACCTCATCTAGCACCGACCCTGTGC CACCGGCTCTCTGGTTAACAGCACCTCTCAACCCCCAGCTCCGGGAGCTTTCCTTGCCCT GTGGTTCCGGATGACAGAGTGGCCAGTTCCCCTGTTCACAGTCCTTCTGAGCTCTAAGAT CTTTACACCCCCCCACCTCCACCCCCACCCCCACATATCTTTATTATCATTCATCCCCTC ACAGACTAGGGTCTTCAAATAAAGCTGTATTTTGTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-277, gnl|bosTau2|chr3 (10555419-10555140) | |
| 1-277, gnl|Hg17|chr1 (152844027-152844307) | |
| 1-277, gnl|Mm7|chr3 (88662095-88661834) | |
| 474-667, gnl|bosTau2|chr3 (10549960-10549767) | |
| 474-667, gnl|canFam2|chr7 (44725529-44725297) | |
| 474-667, gnl|danRer3|chr23 (35483815-35483614) | |
| 474-667, gnl|dasNov1|scaffold_29833 (4094-3902) | |
| 474-667, gnl|echTel1|scaffold_218978 (19445-19637) | |
| 474-667, gnl|fr1|chrUn (115660381-115660162) | |
| 474-667, gnl|galGal2|chr10 (18843926-18844141) | |
| 474-667, gnl|hg17|chr1 (152851123-152851349) | |
| 474-667, gnl|Hg17|chr1 (152851134-152851327) | |
| 474-667, gnl|loxAfr1|scaffold_59051 (8554-8328) | |
| 474-667, gnl|mm7|chr3 (88657328-88657113) | |
| 474-667, gnl|Mm7|chr3 (88657314-88657121) | |
| 474-667, gnl|monDom2|scaffold_59 (1485963-1485741) | |
| 474-667, gnl|oryCun1|scaffold_195642 (14809-14586) | |
| 474-667, gnl|panTro1|chr1 (134795904-134796130) | |
| 474-667, gnl|rheMac2|chr1 (134666131-134666357) | |
| 474-667, gnl|rn3|chr2 (180608710-180608494) | |
| 474-667, gnl|tetNig1|chrUn_random (98713852-98713653) | |
| 474-667, gnl|xenTro1|scaffold_433 (483120-483331) | |
| 737-879, gnl|bosTau2|chr3 (10548685-10548543) | |
| 737-879, gnl|Hg17|chr1 (152853012-152853169) | |
| 737-879, gnl|Mm7|chr3 (88656181-88656041) | |
| 934-1116, gnl|bosTau2|chr3 (10548509-10548339) | |
| 934-1116, gnl|Hg17|chr1 (152853204-152853364) | |
| 934-1116, gnl|Mm7|chr3 (88655988-88655842) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-277, gnl|bosTau2|chr3 (10555419-10555140) | |
| 1-277, gnl|Hg17|chr1 (152844027-152844307) | |
| 1-277, gnl|Mm7|chr3 (88662095-88661834) | |
| 474-667, gnl|bosTau2|chr3 (10549960-10549767) | |
| 474-667, gnl|canFam2|chr7 (44725529-44725297) | |
| 474-667, gnl|danRer3|chr23 (35483815-35483614) | |
| 474-667, gnl|dasNov1|scaffold_29833 (4094-3902) | |
| 474-667, gnl|echTel1|scaffold_218978 (19445-19637) | |
| 474-667, gnl|fr1|chrUn (115660381-115660162) | |
| 474-667, gnl|galGal2|chr10 (18843926-18844141) | |
| 474-667, gnl|hg17|chr1 (152851123-152851349) | |
| 474-667, gnl|Hg17|chr1 (152851134-152851327) | |
| 474-667, gnl|loxAfr1|scaffold_59051 (8554-8328) | |
| 474-667, gnl|mm7|chr3 (88657328-88657113) | |
| 474-667, gnl|Mm7|chr3 (88657314-88657121) | |
| 474-667, gnl|monDom2|scaffold_59 (1485963-1485741) | |
| 474-667, gnl|oryCun1|scaffold_195642 (14809-14586) | |
| 474-667, gnl|panTro1|chr1 (134795904-134796130) | |
| 474-667, gnl|rheMac2|chr1 (134666131-134666357) | |
| 474-667, gnl|rn3|chr2 (180608710-180608494) | |
| 474-667, gnl|tetNig1|chrUn_random (98713852-98713653) | |
| 474-667, gnl|xenTro1|scaffold_433 (483120-483331) | |
| 737-879, gnl|bosTau2|chr3 (10548685-10548543) | |
| 737-879, gnl|Hg17|chr1 (152853012-152853169) | |
| 737-879, gnl|Mm7|chr3 (88656181-88656041) | |
| 934-1116, gnl|bosTau2|chr3 (10548509-10548339) | |
| 934-1116, gnl|Hg17|chr1 (152853204-152853364) | |
| 934-1116, gnl|Mm7|chr3 (88655988-88655842) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ton (0.351) | |
| nco (0.161734) | |
| nmm (0.132802) | |
| ese (0.126502) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.351) | |
| nco (0.161734) | |
| nmm (0.132802) | |
| ese (0.126502) |