Non-Coding RNA Search

Ss1.1-Tra1-TCH01D020092.5

Sequence:


               
               CTGGATCCTCTTCCTGGCTGTGCTCGCCATCCCCGTGTGCGCCGTGCGAGGACGCAACGT
CGAGAACATGAAGATCTTGCGTCTGATGCTGCTCCACATCAAATACCTGTACGGGATCCG
AGTGGAGGTGCGAGGGGCTCACCACTTCCCTCCCTCACAGCCCTATGTCGTCGTCTCCAA
CCACCAGAGCTCCCTCGACCTGCTTGGGATGATGGAGGTCCTGCCAGGCCGCTGTGTGCC
CATTGCCAAGCGTGAGCTCCTGTGGGCCGGCTCTGCCGGGCTGGCTTGCTGGCTGGCAGG
AGTCATCTTCATTGACCGGAAGCGCACTGGGGATGCCATCAGTGTCATGTCCGAGGTTGC
TCAGACCCTGCTCACACAGGACGTGCGGGTCTGGGTTTTTCCTGAGGGCACGAGAAACCA
CAATGGCTCCATGCTGCCCTTCAAACGTGGCGCCTTCCACCTCGCAGTGCAGGCCCAGGT
TCCCATCGTCCCCATAGTCATGTCATCCTATCAAGACTTCTACTGCAAGAAGGAGCGCCG
CTTCACTTCGGGCCGATGTCAGGTGCGGGTGCTGCCCCCAGTGCCCACAGAAGGGCTGAC
CCCAGACGATGTCCCAGCTCTGGCCGACAGAGTCCGGCACTCGATGCTCACCGTCTTCCA
GGAAATCTCCACCGATGGCAGGGGTGGCGGCGACTACCTGAAGAAGCCCGGAGGGGTGGG
CGAGGCCCGGCTCTGAGCTCCCTTCCCATCTGCCCCCCCACCTTCTCCACACCCACTAGC
CCAGTGGGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGATCCTCTTCCTGGCTGTGCTCGCCATCCCCGTGTGCGCCGTGCGAGGACGCAACGT
CGAGAACATGAAGATCTTGCGTCTGATGCTGCTCCACATCAAATACCTGTACGGGATCCG
AGTGGAGGTGCGAGGGGCTCACCACTTCCCTCCCTCACAGCCCTATGTCGTCGTCTCCAA
CCACCAGAGCTCCCTCGACCTGCTTGGGATGATGGAGGTCCTGCCAGGCCGCTGTGTGCC
CATTGCCAAGCGTGAGCTCCTGTGGGCCGGCTCTGCCGGGCTGGCTTGCTGGCTGGCAGG
AGTCATCTTCATTGACCGGAAGCGCACTGGGGATGCCATCAGTGTCATGTCCGAGGTTGC
TCAGACCCTGCTCACACAGGACGTGCGGGTCTGGGTTTTTCCTGAGGGCACGAGAAACCA
CAATGGCTCCATGCTGCCCTTCAAACGTGGCGCCTTCCACCTCGCAGTGCAGGCCCAGGT
TCCCATCGTCCCCATAGTCATGTCATCCTATCAAGACTTCTACTGCAAGAAGGAGCGCCG
CTTCACTTCGGGCCGATGTCAGGTGCGGGTGCTGCCCCCAGTGCCCACAGAAGGGCTGAC
CCCAGACGATGTCCCAGCTCTGGCCGACAGAGTCCGGCACTCGATGCTCACCGTCTTCCA
GGAAATCTCCACCGATGGCAGGGGTGGCGGCGACTACCTGAAGAAGCCCGGAGGGGTGGG
CGAGGCCCGGCTCTGAGCTCCCTTCCCATCTGCCCCCCCACCTTCTCCACACCCACTAGC
CCAGTGGGCCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10441998|gb|AAG17276.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10441998|gb|AAG17276.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               206-324, + strand, RNAz p=0.943913

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               206-324, + strand, RNAz p=0.943913

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC090849, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC090849, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               206-385, gnl|bosTau2|chr23 (23700041-23700220)
               

               
               206-385, gnl|Hg17|chr6 (32246356-32246177)
               

               
               206-385, gnl|Mm7|chr17 (32696608-32696787)
               


               
               551-774, gnl|bosTau2|chr23 (23701138-23701360)
               

               
               551-774, gnl|Hg17|chr6 (32245204-32244998)
               

               
               551-774, gnl|Mm7|chr17 (32697659-32697875)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               206-385, gnl|bosTau2|chr23 (23700041-23700220)
               

               
               206-385, gnl|Hg17|chr6 (32246356-32246177)
               

               
               206-385, gnl|Mm7|chr17 (32696608-32696787)
               


               
               551-774, gnl|bosTau2|chr23 (23701138-23701360)
               

               
               551-774, gnl|Hg17|chr6 (32245204-32244998)
               

               
               551-774, gnl|Mm7|chr17 (32697659-32697875)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	206-385, gnl\|bosTau2\|chr23 (23700041-23700220)
	206-385, gnl\|Hg17\|chr6 (32246356-32246177)
	206-385, gnl\|Mm7\|chr17 (32696608-32696787)

	551-774, gnl\|bosTau2\|chr23 (23701138-23701360)
	551-774, gnl\|Hg17\|chr6 (32245204-32244998)
	551-774, gnl\|Mm7\|chr17 (32697659-32697875)