Ss1.1-Tra1-TCH01D030005.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCCGGAGCGGTCGCCGCCCGTCAGGCCGCCGCGCGTCGTCGTCCCGCGGCGAGGCGCA GCGTTTCTCCCGGCGGCGCGGCGGCTTCCGAGAGTGGGCCGCCGGGCACAGGTTTCTAAA AGGCAGAAAGATGGAGGAATCAGTAACCCAAATGCAGCCGATGCACGAGACGCAGCTCGC CAATTCCGAAGGTGGATACGTGTGGCAGGTCACTGACATGAATCGGCTGCACCGCTTCTT ATGTTTTGGTTCCGAAGGTGGGACGTATTATATCCAAGAACAGAGGCTGGGCCTCCAGAA CGCTGAAGCTTTACTTCGACTGATTGAAGACGGCAGGGGATGTGAAGTGATACAGGAAAT AAAGTCATTTAGTCAGGAGGGCAGAAACGCAAAGCAGGAGCCCACGCTCTTTGCACTCGC CATCTGCTCCCAGTGCTCCGACACCAGCACCAAGCAAGCCGCCTTCAAAGCTGTTCCCGA AGTTTGTCGCATCCCCACACATCTCTTTACCTTCATCCAGTTTAAGAAAGATCTCAAGGA AAGCATGCATTGCGGCATGTGGGGTCGTGCCCTCCGCAAGGCCGTGGCCGACTGGTACAA CGAAAAAGGAGGCATGGCCCTCGCCCTGGCAGTTACAAAATACAAACAGAGAAATGGCTG GTCTCACAAAGATCTCTTAAGATTGTCGCACCTCAAGCCTTCCAGTGAAGGACTTGCTAT TGTCACCAAATACATCACCAAGGGCTGGAAAGAGGTCCATGACACATACAAAGAAAAAGC CCTCTCCGTGGAGACGGAAAGGTTACTCAAGTACCTGGAGGCTGTGGAGAAAGTGAAACG CACCAGAGACGAACTGGAAGTCATCCATCTGATAGAAGAGCACAGGCTGGTTCGGGAGCA TCTCCTGACAAATCACCTCAAGTCCAAAGAGGTATGGAAAGCTTTGTTACAAGAAATGCC TCTTACAGCGTTACTAAGAAACCTTGGAAAAATGACCGCGAATTCAGTGCTTGAACCAGG AAACTCAGAAGTTTCTTTAGTATGTGAAAAACTGTGTAATGAGAAGCTGTTAAAAAAGGC TCGGATACATCCATTTCATGTGTTAGTTGCATTAGAAACTTATAAAACAGGTCACGGGCT CAGAGGAAAACTGAAGTGGCGCCCTGATGAAGAAATTTTGCAAGCTTTGGATGCTGCTTT TTACAAAACATTTAAGATGGTTGAGCCAACGGGAAAGCGTTTCCTGCTGGCAGTTGATGT CAGCGGGTCTATGGAGCAAAGGGTTTTGGGCAGCATCCTCAGCGCTAGCACAGTGGCTGC AGCCATGTGCATGGTGGTCACACGAACAGAAAGCGACTCTTACATAGTTGCTTTTTCAGA TGAAATGGTACCCTGTCCACTGACTACAGATATGACCTTACAGCAGGTTCTAATGGCTAT GAGTCAGATCCCAGCAGGGGAAACAGATTGTTCTCTTCCAATGATCTGGGCTCAGAAGAC AAACACAGCTGCTGACGTCTTCATTGTGTTCACTGATAATGAGACCTTTGCTGGAAGTGT CCACCCTGCTGCCGCTCTGAGGGAGTATCGAAAGAAAATGGGTATTCCGGCTAAACTGAT TGTTTGCGGAATGGCATCCAATGGTTTCACCATTGCCGACCCAGATGACAGAGGCATGTT GGATATGTGTGGCTTTGACACAGGCGCCCTGGATGTCATTCGAAACTTCACGTTAGATGT GATCTAACCACCAGCACCAGCACCATCCAAGAGGTCCGCTGCCAGCAGTGATCGCGCTAA AAAAAAATACGCAGCTACTTCCCAGCTGATCTTAATCCAACAGACAGAGTAAGGCAATGG TATAGAGTGGGAAAATGGAAAGTTTACCTTACCAAAAAAAAAAGAAAGGAAGGGAAGTAC GATGAGCCCAAAGTTCTTTCTGTTTCTCCTAAACTAGCTCTTGGGAAATAGCTTCAGAAT ACACTGTAGCCCCTCTATCTAATAGAGAACTCGTTAATAGACACTGTACAATAGTTTTGC TTTGGTGAATAATCACATTTGTACTTAAAAGAAACGAGAGCCAAAAGTGTAAGTAGTTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCCGGAGCGGTCGCCGCCCGTCAGGCCGCCGCGCGTCGTCGTCCCGCGGCGAGGCGCA GCGTTTCTCCCGGCGGCGCGGCGGCTTCCGAGAGTGGGCCGCCGGGCACAGGTTTCTAAA AGGCAGAAAGATGGAGGAATCAGTAACCCAAATGCAGCCGATGCACGAGACGCAGCTCGC CAATTCCGAAGGTGGATACGTGTGGCAGGTCACTGACATGAATCGGCTGCACCGCTTCTT ATGTTTTGGTTCCGAAGGTGGGACGTATTATATCCAAGAACAGAGGCTGGGCCTCCAGAA CGCTGAAGCTTTACTTCGACTGATTGAAGACGGCAGGGGATGTGAAGTGATACAGGAAAT AAAGTCATTTAGTCAGGAGGGCAGAAACGCAAAGCAGGAGCCCACGCTCTTTGCACTCGC CATCTGCTCCCAGTGCTCCGACACCAGCACCAAGCAAGCCGCCTTCAAAGCTGTTCCCGA AGTTTGTCGCATCCCCACACATCTCTTTACCTTCATCCAGTTTAAGAAAGATCTCAAGGA AAGCATGCATTGCGGCATGTGGGGTCGTGCCCTCCGCAAGGCCGTGGCCGACTGGTACAA CGAAAAAGGAGGCATGGCCCTCGCCCTGGCAGTTACAAAATACAAACAGAGAAATGGCTG GTCTCACAAAGATCTCTTAAGATTGTCGCACCTCAAGCCTTCCAGTGAAGGACTTGCTAT TGTCACCAAATACATCACCAAGGGCTGGAAAGAGGTCCATGACACATACAAAGAAAAAGC CCTCTCCGTGGAGACGGAAAGGTTACTCAAGTACCTGGAGGCTGTGGAGAAAGTGAAACG CACCAGAGACGAACTGGAAGTCATCCATCTGATAGAAGAGCACAGGCTGGTTCGGGAGCA TCTCCTGACAAATCACCTCAAGTCCAAAGAGGTATGGAAAGCTTTGTTACAAGAAATGCC TCTTACAGCGTTACTAAGAAACCTTGGAAAAATGACCGCGAATTCAGTGCTTGAACCAGG AAACTCAGAAGTTTCTTTAGTATGTGAAAAACTGTGTAATGAGAAGCTGTTAAAAAAGGC TCGGATACATCCATTTCATGTGTTAGTTGCATTAGAAACTTATAAAACAGGTCACGGGCT CAGAGGAAAACTGAAGTGGCGCCCTGATGAAGAAATTTTGCAAGCTTTGGATGCTGCTTT TTACAAAACATTTAAGATGGTTGAGCCAACGGGAAAGCGTTTCCTGCTGGCAGTTGATGT CAGCGGGTCTATGGAGCAAAGGGTTTTGGGCAGCATCCTCAGCGCTAGCACAGTGGCTGC AGCCATGTGCATGGTGGTCACACGAACAGAAAGCGACTCTTACATAGTTGCTTTTTCAGA TGAAATGGTACCCTGTCCACTGACTACAGATATGACCTTACAGCAGGTTCTAATGGCTAT GAGTCAGATCCCAGCAGGGGAAACAGATTGTTCTCTTCCAATGATCTGGGCTCAGAAGAC AAACACAGCTGCTGACGTCTTCATTGTGTTCACTGATAATGAGACCTTTGCTGGAAGTGT CCACCCTGCTGCCGCTCTGAGGGAGTATCGAAAGAAAATGGGTATTCCGGCTAAACTGAT TGTTTGCGGAATGGCATCCAATGGTTTCACCATTGCCGACCCAGATGACAGAGGCATGTT GGATATGTGTGGCTTTGACACAGGCGCCCTGGATGTCATTCGAAACTTCACGTTAGATGT GATCTAACCACCAGCACCAGCACCATCCAAGAGGTCCGCTGCCAGCAGTGATCGCGCTAA AAAAAAATACGCAGCTACTTCCCAGCTGATCTTAATCCAACAGACAGAGTAAGGCAATGG TATAGAGTGGGAAAATGGAAAGTTTACCTTACCAAAAAAAAAAGAAAGGAAGGGAAGTAC GATGAGCCCAAAGTTCTTTCTGTTTCTCCTAAACTAGCTCTTGGGAAATAGCTTCAGAAT ACACTGTAGCCCCTCTATCTAATAGAGAACTCGTTAATAGACACTGTACAATAGTTTTGC TTTGGTGAATAATCACATTTGTACTTAAAAGAAACGAGAGCCAAAAGTGTAAGTAGTTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 267-386, + strand, RNAz p=0.558687 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 267-386, + strand, RNAz p=0.558687 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 110-711, gnl|bosTau2|chr16 (4754858-4754257) | |
| 110-711, gnl|Hg17|chr1 (189769819-189770422) | |
| 110-711, gnl|Mm7|chr1 (143697309-143696706) | |
| 927-1079, gnl|bosTau2|chr16 (4751189-4751037) | |
| 927-1079, gnl|canFam2|chr38 (8988835-8988651) | |
| 927-1079, gnl|danRer3|chr2 (4557821-4557988) | |
| 927-1079, gnl|echTel1|scaffold_315564 (58445-58264) | |
| 927-1079, gnl|fr1|chrUn (98316802-98316631) | |
| 927-1079, gnl|galGal2|chr8 (3442736-3442565) | |
| 927-1079, gnl|hg17|chr1 (189777264-189777446) | |
| 927-1079, gnl|Hg17|chr1 (189777283-189777435) | |
| 927-1079, gnl|loxAfr1|scaffold_2572 (48302-48120) | |
| 927-1079, gnl|mm7|chr1 (143692249-143692045) | |
| 927-1079, gnl|Mm7|chr1 (143692206-143692054) | |
| 927-1079, gnl|monDom2|scaffold_16 (50208360-50208542) | |
| 927-1079, gnl|oryCun1|scaffold_152578 (8202-8386) | |
| 927-1079, gnl|panTro1|chr1 (172354118-172354300) | |
| 927-1079, gnl|rn3|chr13 (57608491-57608289) | |
| 927-1079, gnl|tetNig1|chr15 (3340639-3340468) | |
| 927-1079, gnl|xenTro1|scaffold_349 (714352-714541) | |
| 1333-1447, gnl|bosTau2|chr16 (4745870-4745756) | |
| 1333-1447, gnl|canFam2|chr38 (8984337-8984214) | |
| 1333-1447, gnl|dasNov1|scaffold_17905 (15474-15597) | |
| 1333-1447, gnl|echTel1|scaffold_315564 (55442-55319) | |
| 1333-1447, gnl|galGal2|chr8 (3440310-3440187) | |
| 1333-1447, gnl|hg17|chr1 (189782967-189783090) | |
| 1333-1447, gnl|Hg17|chr1 (189782972-189783086) | |
| 1333-1447, gnl|mm7|chr1 (143686756-143686632) | |
| 1333-1447, gnl|Mm7|chr1 (143686748-143686634) | |
| 1333-1447, gnl|monDom2|scaffold_16 (50219654-50219777) | |
| 1333-1447, gnl|panTro1|chr1 (172359807-172359930) | |
| 1333-1447, gnl|rheMac2|chr1 (177518799-177518676) | |
| 1333-1447, gnl|rn3|chr13 (57603265-57603141) | |
| 1333-1447, gnl|xenTro1|scaffold_349 (718737-718860) | |
| 1593-2097, gnl|bosTau2|chr16 (4743636-4743134) | |
| 1593-2097, gnl|Hg17|chr1 (189785364-189785847) | |
| 1593-2097, gnl|Mm7|chr1 (143684177-143683693) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 110-711, gnl|bosTau2|chr16 (4754858-4754257) | |
| 110-711, gnl|Hg17|chr1 (189769819-189770422) | |
| 110-711, gnl|Mm7|chr1 (143697309-143696706) | |
| 927-1079, gnl|bosTau2|chr16 (4751189-4751037) | |
| 927-1079, gnl|canFam2|chr38 (8988835-8988651) | |
| 927-1079, gnl|danRer3|chr2 (4557821-4557988) | |
| 927-1079, gnl|echTel1|scaffold_315564 (58445-58264) | |
| 927-1079, gnl|fr1|chrUn (98316802-98316631) | |
| 927-1079, gnl|galGal2|chr8 (3442736-3442565) | |
| 927-1079, gnl|hg17|chr1 (189777264-189777446) | |
| 927-1079, gnl|Hg17|chr1 (189777283-189777435) | |
| 927-1079, gnl|loxAfr1|scaffold_2572 (48302-48120) | |
| 927-1079, gnl|mm7|chr1 (143692249-143692045) | |
| 927-1079, gnl|Mm7|chr1 (143692206-143692054) | |
| 927-1079, gnl|monDom2|scaffold_16 (50208360-50208542) | |
| 927-1079, gnl|oryCun1|scaffold_152578 (8202-8386) | |
| 927-1079, gnl|panTro1|chr1 (172354118-172354300) | |
| 927-1079, gnl|rn3|chr13 (57608491-57608289) | |
| 927-1079, gnl|tetNig1|chr15 (3340639-3340468) | |
| 927-1079, gnl|xenTro1|scaffold_349 (714352-714541) | |
| 1333-1447, gnl|bosTau2|chr16 (4745870-4745756) | |
| 1333-1447, gnl|canFam2|chr38 (8984337-8984214) | |
| 1333-1447, gnl|dasNov1|scaffold_17905 (15474-15597) | |
| 1333-1447, gnl|echTel1|scaffold_315564 (55442-55319) | |
| 1333-1447, gnl|galGal2|chr8 (3440310-3440187) | |
| 1333-1447, gnl|hg17|chr1 (189782967-189783090) | |
| 1333-1447, gnl|Hg17|chr1 (189782972-189783086) | |
| 1333-1447, gnl|mm7|chr1 (143686756-143686632) | |
| 1333-1447, gnl|Mm7|chr1 (143686748-143686634) | |
| 1333-1447, gnl|monDom2|scaffold_16 (50219654-50219777) | |
| 1333-1447, gnl|panTro1|chr1 (172359807-172359930) | |
| 1333-1447, gnl|rheMac2|chr1 (177518799-177518676) | |
| 1333-1447, gnl|rn3|chr13 (57603265-57603141) | |
| 1333-1447, gnl|xenTro1|scaffold_349 (718737-718860) | |
| 1593-2097, gnl|bosTau2|chr16 (4743636-4743134) | |
| 1593-2097, gnl|Hg17|chr1 (189785364-189785847) | |
| 1593-2097, gnl|Mm7|chr1 (143684177-143683693) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| pro (0.512033) | |
| tes (0.415628) | |
| mgp (0.230681) | |
| aor (0.195274) | |
| lin (0.145603) | |
| ova (0.129132) | |
| sug (0.127291) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| tes (0.415628) | |
| mgp (0.230681) | |
| aor (0.195274) | |
| lin (0.145603) | |
| ova (0.129132) | |
| sug (0.127291) | |
| cty (0.10408) | |
| eje (0.0988338) |