Non-Coding RNA Search

Ss1.1-Tra1-TCH01D030081.5

Sequence:


               
               GGAGACTGCCTCGTGCTGAGAGGAAGGGGCGCGCCGCAGAGAGCGCTGGGCGAGGAGCGG
AGAATTTGCAGCAGAGAGGAAGCGTGTCGGGCGGCCTGATGACCCCCAGGACCTACTTTC
CAACTAGGACAGATGGAGAGATTTAGAAAAAAGTTCATTTGAAGTCCAATTAGATTTGTA
GAACAGTGTGACTCTGTTTTGATGTTTCCCGAGCCCACTGAGATGGAAACCGAATACCTG
AAGAAGTGCTTTGGAAATTGCCTGGTCCAGGCGCTGGCAGAGGTAGCAAAGGTTCAGCCC
AGTGACCCCATAGAGTACCTGGCTCACTGGCTTTATCATTATAGGAAAACGGCAAAAGCC
AAAGAAAAGGGCAGGCAGGAGAAGGTCCAGCTGCAGGAAGAATATGATACTAGCCTCAAA
GAAGCCAAAATAACAGAAATGCTGAAGCGAGAAGAGCGTGAGATTCAACAGGAGTGTGAA
AAGTGTCCCCAGCCACAGATATCTGTAGCAAGCTCCACAAAGAAAACCATATTCATGCAG
GAGAACACAAAACCCCTTGAGAAGGAAGCCTTAAAGCAGGAATCTCTACCAGGCACTTCC
AATATGATGCCAAGAATGCCTCAACAGATTCCTTCTTCAGAACCATCTGTCCAGATTGGC
CAGAATATTGAAACTCCACAAAAAATAAATTACCAGGCTTTTCAGCATGAAGTTGCTCCT
GAAATGTATCCTGGCTCCAAATCCCCTCCCTAGGCTGTAGAAGGTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGACTGCCTCGTGCTGAGAGGAAGGGGCGCGCCGCAGAGAGCGCTGGGCGAGGAGCGG
AGAATTTGCAGCAGAGAGGAAGCGTGTCGGGCGGCCTGATGACCCCCAGGACCTACTTTC
CAACTAGGACAGATGGAGAGATTTAGAAAAAAGTTCATTTGAAGTCCAATTAGATTTGTA
GAACAGTGTGACTCTGTTTTGATGTTTCCCGAGCCCACTGAGATGGAAACCGAATACCTG
AAGAAGTGCTTTGGAAATTGCCTGGTCCAGGCGCTGGCAGAGGTAGCAAAGGTTCAGCCC
AGTGACCCCATAGAGTACCTGGCTCACTGGCTTTATCATTATAGGAAAACGGCAAAAGCC
AAAGAAAAGGGCAGGCAGGAGAAGGTCCAGCTGCAGGAAGAATATGATACTAGCCTCAAA
GAAGCCAAAATAACAGAAATGCTGAAGCGAGAAGAGCGTGAGATTCAACAGGAGTGTGAA
AAGTGTCCCCAGCCACAGATATCTGTAGCAAGCTCCACAAAGAAAACCATATTCATGCAG
GAGAACACAAAACCCCTTGAGAAGGAAGCCTTAAAGCAGGAATCTCTACCAGGCACTTCC
AATATGATGCCAAGAATGCCTCAACAGATTCCTTCTTCAGAACCATCTGTCCAGATTGGC
CAGAATATTGAAACTCCACAAAAAATAAATTACCAGGCTTTTCAGCATGAAGTTGCTCCT
GAAATGTATCCTGGCTCCAAATCCCCTCCCTAGGCTGTAGAAGGTGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55959190|emb|CAI13704.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55959190|emb|CAI13704.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               491-683, - strand, RNAz p=0.700954
               

               
               491-593, - strand, RNAz p=0.642542
               

               
               633-746, - strand, RNAz p=0.851542

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               491-683, - strand, RNAz p=0.700954
               

               
               491-593, - strand, RNAz p=0.642542
               

               
               633-746, - strand, RNAz p=0.851542

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               187-382, gnl|bosTau2|chr15 (50331840-50331644)
               

               
               187-382, gnl|Hg17|chr10 (82112145-82112338)
               

               
               187-382, gnl|Mm7|chr14 (38489008-38488802)
               


               
               491-764, gnl|bosTau2|chr15 (50328037-50327758)
               

               
               491-764, gnl|canFam2|chr4 (32724059-32724263)
               

               
               491-764, gnl|dasNov1|scaffold_99400 (3260-3458)
               

               
               491-764, gnl|echTel1|scaffold_265683 (7363-7160)
               

               
               491-764, gnl|hg17|chr10 (82116408-82116614)
               

               
               491-764, gnl|Hg17|chr10 (82116422-82116698)
               

               
               491-764, gnl|loxAfr1|scaffold_63724 (213-9)
               

               
               491-764, gnl|mm7|chr14 (38475931-38475768)
               

               
               491-764, gnl|oryCun1|scaffold_212261 (43361-43543)
               

               
               491-764, gnl|panTro1|chr8 (83502555-83502761)
               

               
               491-764, gnl|rheMac2|chr9 (57032791-57032585)
               

               
               491-764, gnl|rn3|chr16 (17489675-17489512)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               187-382, gnl|bosTau2|chr15 (50331840-50331644)
               

               
               187-382, gnl|Hg17|chr10 (82112145-82112338)
               

               
               187-382, gnl|Mm7|chr14 (38489008-38488802)
               


               
               491-764, gnl|bosTau2|chr15 (50328037-50327758)
               

               
               491-764, gnl|canFam2|chr4 (32724059-32724263)
               

               
               491-764, gnl|dasNov1|scaffold_99400 (3260-3458)
               

               
               491-764, gnl|echTel1|scaffold_265683 (7363-7160)
               

               
               491-764, gnl|hg17|chr10 (82116408-82116614)
               

               
               491-764, gnl|Hg17|chr10 (82116422-82116698)
               

               
               491-764, gnl|loxAfr1|scaffold_63724 (213-9)
               

               
               491-764, gnl|mm7|chr14 (38475931-38475768)
               

               
               491-764, gnl|oryCun1|scaffold_212261 (43361-43543)
               

               
               491-764, gnl|panTro1|chr8 (83502555-83502761)
               

               
               491-764, gnl|rheMac2|chr9 (57032791-57032585)
               

               
               491-764, gnl|rn3|chr16 (17489675-17489512)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (0.207814)
               

               
               fhi (0.169578)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               fhi (0.169578)
               

               
               tra (0.123092)

	491-683, - strand, RNAz p=0.700954
	491-593, - strand, RNAz p=0.642542
	633-746, - strand, RNAz p=0.851542

	187-382, gnl\|bosTau2\|chr15 (50331840-50331644)
	187-382, gnl\|Hg17\|chr10 (82112145-82112338)
	187-382, gnl\|Mm7\|chr14 (38489008-38488802)

	491-764, gnl\|bosTau2\|chr15 (50328037-50327758)
	491-764, gnl\|canFam2\|chr4 (32724059-32724263)
	491-764, gnl\|dasNov1\|scaffold_99400 (3260-3458)
	491-764, gnl\|echTel1\|scaffold_265683 (7363-7160)
	491-764, gnl\|hg17\|chr10 (82116408-82116614)
	491-764, gnl\|Hg17\|chr10 (82116422-82116698)
	491-764, gnl\|loxAfr1\|scaffold_63724 (213-9)
	491-764, gnl\|mm7\|chr14 (38475931-38475768)
	491-764, gnl\|oryCun1\|scaffold_212261 (43361-43543)
	491-764, gnl\|panTro1\|chr8 (83502555-83502761)
	491-764, gnl\|rheMac2\|chr9 (57032791-57032585)
	491-764, gnl\|rn3\|chr16 (17489675-17489512)