Non-Coding RNA Search

Ss1.1-Tra1-TCH01D030090.5

Sequence:


               
               TATTCACCCTCAGTGGTAATGGGCCAGATGGAGCCTTGATGGAATCTGAGCCCCAGGAAG
GCAGGATCCCTGATGCTATCCTGCTAGGGCATGGAGGGGTCTGTCAGTGCTATGGCCCTC
AGGAATCTTCAGACTCATCTCCCTCCTCGAAGTCAGGCTCTGGCTCCAGTTCAGGGTCTG
GTTCTGGTTCTGCCTCTGGTTCTGGATCCATTTGGGGTTCCAACTTCGGCTCGGCCTCTT
CAGAGGCCTCAGCTTCCAGCTGTGGCTCGGGTTCTTCAGGAGTTCCGGATTGTGCTGCCT
CGGAGTCCTCAGGACTCTGGGTCTCGTCGCAATCTGAAGCTCTAGGCAGCCAGGGGCATG
CGATCCCTGAGCCAGCTGGCTCAGGACTCCAGTGGCCTGGGCACGGGGGGTCGTAACTTC
GTTCCCGGTAGCCGGTGCCCACGTGCTGCCAGTCCCAGGCGGGGTCGGGCGCGTGCACGG
TTCGCTGGGCGCAGTTCAACAGTTCACGGCAGGCGGCCTCGCCCTTGCTTTGCACCAGCA
GCAGCAGGCGACGTACCCTGCGCTCGGCATCAGGCAGTGCGTCCAACGCCTCGTACTCTG
GTCCGGTGAGCACGCCCCGTGCCAGCAGCGCATCCAGCAGCAGCCCTGAGTCTGCCTGTA
GCGTCTCTACCAGACGTTTCCGCTCCCGGTCGATCGTCTCTGACGGCCTCTCCTGCGCGT
TGCCCATGGTGGGGGCTCCTCCGGGAGCGGCTCGAGCTGTCGGGGCGCGGATTTTGCCCA
ATCTCAGTTTCTCTGCCCTCCCCCAGAGAGGGGTAGGGGTGGAGCTCCCGGTCCGTGCGC
TGCCGGCGGCCCCACTCTCCGATCGAGCCTCGGTGGGGCAGGAGATGACGAGGCAGAAAG
GGCCGGCGGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTCACCCTCAGTGGTAATGGGCCAGATGGAGCCTTGATGGAATCTGAGCCCCAGGAAG
GCAGGATCCCTGATGCTATCCTGCTAGGGCATGGAGGGGTCTGTCAGTGCTATGGCCCTC
AGGAATCTTCAGACTCATCTCCCTCCTCGAAGTCAGGCTCTGGCTCCAGTTCAGGGTCTG
GTTCTGGTTCTGCCTCTGGTTCTGGATCCATTTGGGGTTCCAACTTCGGCTCGGCCTCTT
CAGAGGCCTCAGCTTCCAGCTGTGGCTCGGGTTCTTCAGGAGTTCCGGATTGTGCTGCCT
CGGAGTCCTCAGGACTCTGGGTCTCGTCGCAATCTGAAGCTCTAGGCAGCCAGGGGCATG
CGATCCCTGAGCCAGCTGGCTCAGGACTCCAGTGGCCTGGGCACGGGGGGTCGTAACTTC
GTTCCCGGTAGCCGGTGCCCACGTGCTGCCAGTCCCAGGCGGGGTCGGGCGCGTGCACGG
TTCGCTGGGCGCAGTTCAACAGTTCACGGCAGGCGGCCTCGCCCTTGCTTTGCACCAGCA
GCAGCAGGCGACGTACCCTGCGCTCGGCATCAGGCAGTGCGTCCAACGCCTCGTACTCTG
GTCCGGTGAGCACGCCCCGTGCCAGCAGCGCATCCAGCAGCAGCCCTGAGTCTGCCTGTA
GCGTCTCTACCAGACGTTTCCGCTCCCGGTCGATCGTCTCTGACGGCCTCTCCTGCGCGT
TGCCCATGGTGGGGGCTCCTCCGGGAGCGGCTCGAGCTGTCGGGGCGCGGATTTTGCCCA
ATCTCAGTTTCTCTGCCCTCCCCCAGAGAGGGGTAGGGGTGGAGCTCCCGGTCCGTGCGC
TGCCGGCGGCCCCACTCTCCGATCGAGCCTCGGTGGGGCAGGAGATGACGAGGCAGAAAG
GGCCGGCGGGAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61811407|ref|XP_593859.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61811407|ref|XP_593859.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-128, gnl|bosTau2|chr18 (28359153-28359027)
               

               
               1-128, gnl|Hg17|chr16 (65766575-65766449)
               

               
               1-128, gnl|Mm7|chr8 (103878648-103878532)
               


               
               432-770, gnl|bosTau2|chr18 (28358465-28358124)
               

               
               432-770, gnl|Hg17|chr16 (65765869-65765530)
               

               
               432-770, gnl|Mm7|chr8 (103877910-103877577)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-128, gnl|bosTau2|chr18 (28359153-28359027)
               

               
               1-128, gnl|Hg17|chr16 (65766575-65766449)
               

               
               1-128, gnl|Mm7|chr8 (103878648-103878532)
               


               
               432-770, gnl|bosTau2|chr18 (28358465-28358124)
               

               
               432-770, gnl|Hg17|chr16 (65765869-65765530)
               

               
               432-770, gnl|Mm7|chr8 (103877910-103877577)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               sme (0.305437)
               

               
               hyp (0.142837)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               hyp (0.142837)
               

               
               ldo (0.0970026)

	1-128, gnl\|bosTau2\|chr18 (28359153-28359027)
	1-128, gnl\|Hg17\|chr16 (65766575-65766449)
	1-128, gnl\|Mm7\|chr8 (103878648-103878532)

	432-770, gnl\|bosTau2\|chr18 (28358465-28358124)
	432-770, gnl\|Hg17\|chr16 (65765869-65765530)
	432-770, gnl\|Mm7\|chr8 (103877910-103877577)