Ss1.1-Tra1-TCH01D030096.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAAATAGTTACCAGAATGCACGGGATCTTCTAAACACTGGAGGCCTACAGAAAATTATG ACCATAAGTGCTGGTGACAGCTATTCCACCAACAAAGCAAGTAAAGCTGCCTCTGTTCTC CTATATTCTCTATGGACGCACACAGAGCTCCATAATGCCTATAAGAAGGCTCAATTTAAG AAGACAGATTTTGTCAACAGCCGGACGGCCAAAGCCTACCACTCCCTGAAAGACTGAAGA ACATGAATGAAAAAGTGCTCTCAGAAACATGAACTTCATCATTCTCAGTCCCAAAAAGCC CCAAAGGAAAACACCTATTTTTCTACTGCCCAGCCCAAGAAACCTTAAAAACGCATGCCC TGTTTCTATCCTTTTCTATTTCCATAGCCCCCAGGATCCAGAAAACACATAAGCAGAATG TAATTTTTTTTAGTCTTCCAGAAGACTTCTGCAAGTTTGCCACCAGTAGATACTGGCAAC AGGCTCGATTTTGCCCTCTACAAATAGTGGTCTTTTTGATCAGGGCTGACGGGGCATGGC CTCCTAGAATCAAAATGTGAATTACTGTGGAATGGACATTAACAGAATGAATAAGGAAGG AAGCTCTTATATTACTAGGATTTTAAAAGTTTGATTTTCATTTGTGTTCCTTTTCTGGTT TCCATATTTTGTCACTCACATGCATGATGCTTCACCATTGAGCCATGAGTATATTGTTCT GCAGTGCTGAAACAGAATGGAAACAACAAGAAATATTTATGGAGTTATCCAGAAAAAAAA TTTAATGGCAGAATTCCTTGTTTGTTTACTTTGTGCTTGTTTTTATACTCTTGAATTTTT TTTCTCTGATTTTCAATGAACTTAAGAAATTTAGATCACAGAGCATGCATGACTGTAATC AAAAGAAATTGAAAAGAAGTAATTGGAGTTTCTGCTGTGGCAGAATGGAATTGGGAGCAT CTCTGCAGCATGAGGACACAGGTTGGATCCCCAGTCCAGCAAAATGGGTTAAAGGATCTG GTGTTGCCACCTCAGCTGTGGCTCAGATCTGATCCCTGCCCTGGGAATTCCCTATGCCTC AGGGGAGCCAAAAAAGTAAAAATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAAATAGTTACCAGAATGCACGGGATCTTCTAAACACTGGAGGCCTACAGAAAATTATG ACCATAAGTGCTGGTGACAGCTATTCCACCAACAAAGCAAGTAAAGCTGCCTCTGTTCTC CTATATTCTCTATGGACGCACACAGAGCTCCATAATGCCTATAAGAAGGCTCAATTTAAG AAGACAGATTTTGTCAACAGCCGGACGGCCAAAGCCTACCACTCCCTGAAAGACTGAAGA ACATGAATGAAAAAGTGCTCTCAGAAACATGAACTTCATCATTCTCAGTCCCAAAAAGCC CCAAAGGAAAACACCTATTTTTCTACTGCCCAGCCCAAGAAACCTTAAAAACGCATGCCC TGTTTCTATCCTTTTCTATTTCCATAGCCCCCAGGATCCAGAAAACACATAAGCAGAATG TAATTTTTTTTAGTCTTCCAGAAGACTTCTGCAAGTTTGCCACCAGTAGATACTGGCAAC AGGCTCGATTTTGCCCTCTACAAATAGTGGTCTTTTTGATCAGGGCTGACGGGGCATGGC CTCCTAGAATCAAAATGTGAATTACTGTGGAATGGACATTAACAGAATGAATAAGGAAGG AAGCTCTTATATTACTAGGATTTTAAAAGTTTGATTTTCATTTGTGTTCCTTTTCTGGTT TCCATATTTTGTCACTCACATGCATGATGCTTCACCATTGAGCCATGAGTATATTGTTCT GCAGTGCTGAAACAGAATGGAAACAACAAGAAATATTTATGGAGTTATCCAGAAAAAAAA TTTAATGGCAGAATTCCTTGTTTGTTTACTTTGTGCTTGTTTTTATACTCTTGAATTTTT TTTCTCTGATTTTCAATGAACTTAAGAAATTTAGATCACAGAGCATGCATGACTGTAATC AAAAGAAATTGAAAAGAAGTAATTGGAGTTTCTGCTGTGGCAGAATGGAATTGGGAGCAT CTCTGCAGCATGAGGACACAGGTTGGATCCCCAGTCCAGCAAAATGGGTTAAAGGATCTG GTGTTGCCACCTCAGCTGTGGCTCAGATCTGATCCCTGCCCTGGGAATTCCCTATGCCTC AGGGGAGCCAAAAAAGTAAAAATG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 643-762, - strand, RNAz p=0.575121 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 643-762, - strand, RNAz p=0.575121 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-105, gnl|bosTau2|chr13 (30819437-30819542) | |
| 1-105, gnl|canFam2|chr27 (19116986-19116905) | |
| 1-105, gnl|canFam2|chr27 (19116789-19116979) | |
| 1-105, gnl|dasNov1|scaffold_178516 (4515-4586) | |
| 1-105, gnl|dasNov1|scaffold_178516 (4693-4512) | |
| 1-105, gnl|echTel1|scaffold_306509 (252-170) | |
| 1-105, gnl|echTel1|scaffold_306509 (54-244) | |
| 1-105, gnl|fr1|chrUn (138393139-138393338) | |
| 1-105, gnl|galGal2|chr1 (55534020-55533939) | |
| 1-105, gnl|galGal2|chr1 (55533823-55534010) | |
| 1-105, gnl|hg17|chr12 (32840304-32840385) | |
| 1-105, gnl|hg17|chr12 (6459291-6459481) | |
| 1-105, gnl|Hg17|chr12 (32840389-32840284) | |
| 1-105, gnl|loxAfr1|scaffold_3474 (54547-54630) | |
| 1-105, gnl|loxAfr1|scaffold_3474 (54746-54554) | |
| 1-105, gnl|mm7|chr16 (15812072-15811991) | |
| 1-105, gnl|mm7|chr16 (15811875-15812065) | |
| 1-105, gnl|Mm7|chr16 (15811985-15812091) | |
| 1-105, gnl|monDom2|scaffold_130 (1406269-1406350) | |
| 1-105, gnl|monDom2|scaffold_130 (1406466-1406279) | |
| 1-105, gnl|oryCun1|scaffold_194827 (31577-31496) | |
| 1-105, gnl|oryCun1|scaffold_194827 (31380-31570) | |
| 1-105, gnl|panTro1|chr10 (6993517-6993707) | |
| 1-105, gnl|panTro1|chrUn_random (34211213-34211132) | |
| 1-105, gnl|rheMac2|chr11 (32895129-32895210) | |
| 1-105, gnl|rheMac2|chr11 (32895326-32895136) | |
| 1-105, gnl|rn3|chr11 (86617240-86617159) | |
| 1-105, gnl|rn3|chr11 (86617043-86617233) | |
| 166-267, gnl|bosTau2|chr13 (30822219-30822316) | |
| 166-267, gnl|Hg17|chr12 (32836696-32836602) | |
| 166-267, gnl|Mm7|chr16 (15815523-15815622) | |
| 292-407, gnl|bosTau2|chr13 (30822321-30822435) | |
| 292-407, gnl|Hg17|chr12 (32836598-32836485) | |
| 292-407, gnl|Mm7|chr16 (15815672-15815783) | |
| 437-923, gnl|bosTau2|chr13 (30822425-30822898) | |
| 437-923, gnl|Hg17|chr12 (32836495-32835984) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-105, gnl|bosTau2|chr13 (30819437-30819542) | |
| 1-105, gnl|canFam2|chr27 (19116986-19116905) | |
| 1-105, gnl|canFam2|chr27 (19116789-19116979) | |
| 1-105, gnl|dasNov1|scaffold_178516 (4515-4586) | |
| 1-105, gnl|dasNov1|scaffold_178516 (4693-4512) | |
| 1-105, gnl|echTel1|scaffold_306509 (252-170) | |
| 1-105, gnl|echTel1|scaffold_306509 (54-244) | |
| 1-105, gnl|fr1|chrUn (138393139-138393338) | |
| 1-105, gnl|galGal2|chr1 (55534020-55533939) | |
| 1-105, gnl|galGal2|chr1 (55533823-55534010) | |
| 1-105, gnl|hg17|chr12 (32840304-32840385) | |
| 1-105, gnl|hg17|chr12 (6459291-6459481) | |
| 1-105, gnl|Hg17|chr12 (32840389-32840284) | |
| 1-105, gnl|loxAfr1|scaffold_3474 (54547-54630) | |
| 1-105, gnl|loxAfr1|scaffold_3474 (54746-54554) | |
| 1-105, gnl|mm7|chr16 (15812072-15811991) | |
| 1-105, gnl|mm7|chr16 (15811875-15812065) | |
| 1-105, gnl|Mm7|chr16 (15811985-15812091) | |
| 1-105, gnl|monDom2|scaffold_130 (1406269-1406350) | |
| 1-105, gnl|monDom2|scaffold_130 (1406466-1406279) | |
| 1-105, gnl|oryCun1|scaffold_194827 (31577-31496) | |
| 1-105, gnl|oryCun1|scaffold_194827 (31380-31570) | |
| 1-105, gnl|panTro1|chr10 (6993517-6993707) | |
| 1-105, gnl|panTro1|chrUn_random (34211213-34211132) | |
| 1-105, gnl|rheMac2|chr11 (32895129-32895210) | |
| 1-105, gnl|rheMac2|chr11 (32895326-32895136) | |
| 1-105, gnl|rn3|chr11 (86617240-86617159) | |
| 1-105, gnl|rn3|chr11 (86617043-86617233) | |
| 166-267, gnl|bosTau2|chr13 (30822219-30822316) | |
| 166-267, gnl|Hg17|chr12 (32836696-32836602) | |
| 166-267, gnl|Mm7|chr16 (15815523-15815622) | |
| 292-407, gnl|bosTau2|chr13 (30822321-30822435) | |
| 292-407, gnl|Hg17|chr12 (32836598-32836485) | |
| 292-407, gnl|Mm7|chr16 (15815672-15815783) | |
| 437-923, gnl|bosTau2|chr13 (30822425-30822898) | |
| 437-923, gnl|Hg17|chr12 (32836495-32835984) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.145603) |