Ss1.1-Tra1-TCH01D040002.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTCAAATTCTTATGTATTTTTGTGTTGTTTCTGCAAGTCAGAGTATCAGTTGAGCAAA AGGGACATCAAGCCAAGTGGGCTGTTTGGTTTCCTGTAAACACAATTGACTGGCTAAATA TTTCACTTATTAACTTGTACTATTATGATGTAGATTCAGCTATAGTTGGGATGAATGCTT CGGATTCAAGGATTCAGGATTCTGGATTGGGGTCCTTTTTTTTGTCTTCTCTAACAATCC AACTCCCGGTGAATCAGACGGCTCTTACTCATTCCATCTTTTCCTCTCTTCCTTCTATTC TTGATCTTCACCATATCCACCACAACCTTCCTGAAAGAGAAACCATCAAAAATTAAAGGA ATTGAATATAGACTGACACATCATAGAAGTTGTCAACTGGAATCAGAAAAATGGGAAGAA TATTGAAATTAGTAGATGATTGGAAAGATATGGAGACTGCATCCAAAAGCTTGCATTAAC TATTGCTGGATTTATTTGTTTTTGTGGGTCCCAACCAGGGATGATTTTGCCTCCTAAGGG ACATTTAACAATGTGTGGAGATATTTTTAGGTGTCACAACTTGAGGGTGGGTTACTGAAA TCTAGTGAATAGAGTCCAGGAATGCTGCTAAACGGCTTACGATGCATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTCAAATTCTTATGTATTTTTGTGTTGTTTCTGCAAGTCAGAGTATCAGTTGAGCAAA AGGGACATCAAGCCAAGTGGGCTGTTTGGTTTCCTGTAAACACAATTGACTGGCTAAATA TTTCACTTATTAACTTGTACTATTATGATGTAGATTCAGCTATAGTTGGGATGAATGCTT CGGATTCAAGGATTCAGGATTCTGGATTGGGGTCCTTTTTTTTGTCTTCTCTAACAATCC AACTCCCGGTGAATCAGACGGCTCTTACTCATTCCATCTTTTCCTCTCTTCCTTCTATTC TTGATCTTCACCATATCCACCACAACCTTCCTGAAAGAGAAACCATCAAAAATTAAAGGA ATTGAATATAGACTGACACATCATAGAAGTTGTCAACTGGAATCAGAAAAATGGGAAGAA TATTGAAATTAGTAGATGATTGGAAAGATATGGAGACTGCATCCAAAAGCTTGCATTAAC TATTGCTGGATTTATTTGTTTTTGTGGGTCCCAACCAGGGATGATTTTGCCTCCTAAGGG ACATTTAACAATGTGTGGAGATATTTTTAGGTGTCACAACTTGAGGGTGGGTTACTGAAA TCTAGTGAATAGAGTCCAGGAATGCTGCTAAACGGCTTACGATGCATA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 527-631, - strand, RNAz p=0.617911 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 527-631, - strand, RNAz p=0.617911 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-342, gnl|bosTau2|chr4 (55279755-55279414) | |
| 1-342, gnl|Hg17|chr7 (136160400-136160744) | |
| 503-648, gnl|bosTau2|chr16 (38497887-38497747) | |
| 503-648, gnl|canFam2|chr2 (85146320-85146167) | |
| 503-648, gnl|dasNov1|scaffold_9049 (43231-43102) | |
| 503-648, gnl|echTel1|scaffold_307850 (6353-6475) | |
| 503-648, gnl|hg17|chr1 (15301777-15301939) | |
| 503-648, gnl|Hg17|chr1 (15302014-15301852) | |
| 503-648, gnl|oryCun1|scaffold_151589 (12337-12491) | |
| 503-648, gnl|panTro1|chr1 (15446416-15446578) | |
| 503-648, gnl|rheMac2|chr1 (17855377-17855539) | |
| 503-648, gnl|rn3|chr5 (160944944-160944841) | |
| 505-646, gnl|bosTau2|chr14 (25405566-25405707) | |
| 505-646, gnl|canFam2|chr29 (31388214-31388546) | |
| 505-646, gnl|dasNov1|scaffold_62392 (4121-3801) | |
| 505-646, gnl|echTel1|scaffold_323927 (45524-45121) | |
| 505-646, gnl|hg17|chr8 (82231209-82231551) | |
| 505-646, gnl|Hg17|chr8 (82231258-82231400) | |
| 505-646, gnl|mm7|chr3 (9892277-9892619) | |
| 505-646, gnl|Mm7|chr3 (9892322-9892473) | |
| 505-646, gnl|oryCun1|scaffold_181536 (91376-91732) | |
| 505-646, gnl|panTro1|chr7 (84361519-84361861) | |
| 505-646, gnl|rheMac2|chr8 (83593357-83593699) | |
| 505-646, gnl|rn3|chr2 (93775262-93774931) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-342, gnl|bosTau2|chr4 (55279755-55279414) | |
| 1-342, gnl|Hg17|chr7 (136160400-136160744) | |
| 503-648, gnl|bosTau2|chr16 (38497887-38497747) | |
| 503-648, gnl|canFam2|chr2 (85146320-85146167) | |
| 503-648, gnl|dasNov1|scaffold_9049 (43231-43102) | |
| 503-648, gnl|echTel1|scaffold_307850 (6353-6475) | |
| 503-648, gnl|hg17|chr1 (15301777-15301939) | |
| 503-648, gnl|Hg17|chr1 (15302014-15301852) | |
| 503-648, gnl|oryCun1|scaffold_151589 (12337-12491) | |
| 503-648, gnl|panTro1|chr1 (15446416-15446578) | |
| 503-648, gnl|rheMac2|chr1 (17855377-17855539) | |
| 503-648, gnl|rn3|chr5 (160944944-160944841) | |
| 505-646, gnl|bosTau2|chr14 (25405566-25405707) | |
| 505-646, gnl|canFam2|chr29 (31388214-31388546) | |
| 505-646, gnl|dasNov1|scaffold_62392 (4121-3801) | |
| 505-646, gnl|echTel1|scaffold_323927 (45524-45121) | |
| 505-646, gnl|hg17|chr8 (82231209-82231551) | |
| 505-646, gnl|Hg17|chr8 (82231258-82231400) | |
| 505-646, gnl|mm7|chr3 (9892277-9892619) | |
| 505-646, gnl|Mm7|chr3 (9892322-9892473) | |
| 505-646, gnl|oryCun1|scaffold_181536 (91376-91732) | |
| 505-646, gnl|panTro1|chr7 (84361519-84361861) | |
| 505-646, gnl|rheMac2|chr8 (83593357-83593699) | |
| 505-646, gnl|rn3|chr2 (93775262-93774931) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.119646) |