Non-Coding RNA Search

Ss1.1-Tra1-TCH01D040023.5

Sequence:


               
               GTGTGGCCATGTTGGTAGCAGGCTTGCTCCAGGCTCCAGCCTCTCTCTGACTGTGAGAGT
TTGCCCACCAGCCTACCACTCTCAGTGCCTCCTTTGCAGAGCCTGTCACTTCCCTCTCCC
CCTTGGAAGCCCATTCTGTTCCCCAAGTGCCTCCTTCCCAACTGTGGGGGATTAAAAGGA
GCCCCACTGCTGCTACCTGGGGGATGGGGGCACCTGGGCCAAAGCAAAGGGCAGGGCTTC
GCGGGGAGAGCACAGTCAGAATTCCAGCGTCAGCCCTAGCTCCACTCTTGTTTGTTACTG
CCAGTTGCCTCTCCAGGCTCTGCTGTTCCCTCCTTTGCAGCTGCATGAAGGTGCCATCTA
GTGTTTGGTACAAGTATGGGCAGCCTAGGAATGACTCCTCCTCTCCCTTTATCCTCTAAG
AGGAAGTGGGAAGAAAGGAGCTGCTGTATTGAGGGAGGATGCCCCGGCTGCTCAACTCTC
TCCCCTTCTGCTGAGCTTCTGCACAGCTCGCCCTGGAACTTAGCCATACTGTGTGACCTG
CCTCTGAACCCTGAGTGCCTGGGGCATTGGCCTTCTCACTGGTAGCCTTGCTCAGTCCAG
TCTGTCCCTGCTTCTTTTCACAGCATTACCGTTTTAGTCTGGGCCCCACTGAATCTCAAG
ACTGTGGAACTGGGTGGCTGCTTTCCCAGAGGTCTGAGCCAGACTCCTCTTCTCAGTCAT
GGTACCTCTTCACCACCACACACGGGGTGGAACCCAAGCCCTCTCCCTCCACAGCTGCTT
TCAGTGGGTAGGAAGGAGCCAGGGCCCAGCTTTAGCCTTAGCTGGACTTCAGGGCCCCTG
TCAGCAAGGAGGGTTTGGCCCTCAGTTCTTCCCAGTACCCTTGGGCTGGGCTGTCTTCTT
TTTGCATGTGCCACCTCCAGTGGGAAACCAAGCCCAAAGAGACCACTCTGGGCCACATAA
TCCATGCTTTGTGCACCCTCTTCTTCTGTCCCCAGTGCTCCTAGCACAAGGCAGTGGAAA
GCCCAATCCCTATGGCCTCAGAATTCCTACCACTTTCCCAAGTGCCTCTGGGGGCCTGAA
GCCTTGGGGATTTATTTCCTCTCTTGGCCAGGATGGGCCTGGTCCTGAGGGTAGGAAGTG
GAAGTTTGGAGACTTGGGCCTTTACACCATGGACTGTGGATGGAGAATGTGCAGTTATTT
ATTTCGTGTACTCAGTTTGTAATGTATCCTCTGTACTCAATAAACAGGCTGCCTTCCCCC
AGGAAGGCTGCCCATTCATTTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTGGCCATGTTGGTAGCAGGCTTGCTCCAGGCTCCAGCCTCTCTCTGACTGTGAGAGT
TTGCCCACCAGCCTACCACTCTCAGTGCCTCCTTTGCAGAGCCTGTCACTTCCCTCTCCC
CCTTGGAAGCCCATTCTGTTCCCCAAGTGCCTCCTTCCCAACTGTGGGGGATTAAAAGGA
GCCCCACTGCTGCTACCTGGGGGATGGGGGCACCTGGGCCAAAGCAAAGGGCAGGGCTTC
GCGGGGAGAGCACAGTCAGAATTCCAGCGTCAGCCCTAGCTCCACTCTTGTTTGTTACTG
CCAGTTGCCTCTCCAGGCTCTGCTGTTCCCTCCTTTGCAGCTGCATGAAGGTGCCATCTA
GTGTTTGGTACAAGTATGGGCAGCCTAGGAATGACTCCTCCTCTCCCTTTATCCTCTAAG
AGGAAGTGGGAAGAAAGGAGCTGCTGTATTGAGGGAGGATGCCCCGGCTGCTCAACTCTC
TCCCCTTCTGCTGAGCTTCTGCACAGCTCGCCCTGGAACTTAGCCATACTGTGTGACCTG
CCTCTGAACCCTGAGTGCCTGGGGCATTGGCCTTCTCACTGGTAGCCTTGCTCAGTCCAG
TCTGTCCCTGCTTCTTTTCACAGCATTACCGTTTTAGTCTGGGCCCCACTGAATCTCAAG
ACTGTGGAACTGGGTGGCTGCTTTCCCAGAGGTCTGAGCCAGACTCCTCTTCTCAGTCAT
GGTACCTCTTCACCACCACACACGGGGTGGAACCCAAGCCCTCTCCCTCCACAGCTGCTT
TCAGTGGGTAGGAAGGAGCCAGGGCCCAGCTTTAGCCTTAGCTGGACTTCAGGGCCCCTG
TCAGCAAGGAGGGTTTGGCCCTCAGTTCTTCCCAGTACCCTTGGGCTGGGCTGTCTTCTT
TTTGCATGTGCCACCTCCAGTGGGAAACCAAGCCCAAAGAGACCACTCTGGGCCACATAA
TCCATGCTTTGTGCACCCTCTTCTTCTGTCCCCAGTGCTCCTAGCACAAGGCAGTGGAAA
GCCCAATCCCTATGGCCTCAGAATTCCTACCACTTTCCCAAGTGCCTCTGGGGGCCTGAA
GCCTTGGGGATTTATTTCCTCTCTTGGCCAGGATGGGCCTGGTCCTGAGGGTAGGAAGTG
GAAGTTTGGAGACTTGGGCCTTTACACCATGGACTGTGGATGGAGAATGTGCAGTTATTT
ATTTCGTGTACTCAGTTTGTAATGTATCCTCTGTACTCAATAAACAGGCTGCCTTCCCCC
AGGAAGGCTGCCCATTCATTTTGA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               116-228, - strand, RNAz p=0.920941
               

               
               743-887, - strand, RNAz p=0.97428
               

               
               928-1163, - strand, RNAz p=0.999489

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-228, - strand, RNAz p=0.920941
               

               
               743-887, - strand, RNAz p=0.97428
               

               
               928-1163, - strand, RNAz p=0.999489

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               129-252, + strand, RNAmicro p=0.999893

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               129-252, + strand, RNAmicro p=0.999893

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1284, gnl|bosTau2|chr18 (14945755-14944484)
               

               
               1-1284, gnl|Hg17|chr16 (66519716-66521080)
               

               
               1-1284, gnl|Mm7|chr8 (104529400-104530657)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1284, gnl|bosTau2|chr18 (14945755-14944484)
               

               
               1-1284, gnl|Hg17|chr16 (66519716-66521080)
               

               
               1-1284, gnl|Mm7|chr8 (104529400-104530657)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cov (0.396458)
               

               
               eru (0.240096)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               eru (0.240096)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	116-228, - strand, RNAz p=0.920941
	743-887, - strand, RNAz p=0.97428
	928-1163, - strand, RNAz p=0.999489

	1-1284, gnl\|bosTau2\|chr18 (14945755-14944484)
	1-1284, gnl\|Hg17\|chr16 (66519716-66521080)
	1-1284, gnl\|Mm7\|chr8 (104529400-104530657)

	cov (0.396458)
	eru (0.240096)
	fli (0.202881)
	fcc (0.197785)
	nco (0.161734)
	cli (0.152812)
	nmm (0.132802)
	ute (0.132784)
	pgl (0.118483)
	ebs (0.118301)