Non-Coding RNA Search

Ss1.1-Tra1-TCH01D040102.5.5

Sequence:


               
               TCTCTCGACTCCGCTGCTGCTCTCAATACTTCTCCCTACTCACCTCGACTCTTAGCTTGT
CGGGGACGGTAACCAGGACTCGGTGTCTACTCCTGTTGCCTGCGCTTGCTGACCGGTAAC
CACCATGCGTGAGTGCATCTCCATCCACGTTGGCCAAGCTGGTGTCCAGATCGGCAATGC
CTGCTGGGAGCTCTACTGCCTGGAACACGGCATCCAGCCCGATGGCCAGATGCCGAGTGA
CAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCAGTGAGACAGGCGCTGG
CAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACAGTCATTGATGAAGTTCG
CACTGGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAGGAAGATGC
TGCCAATAACTATGCCCGAGGTCACTACACCATTGGCAAGGAGATCATTGACCTCGTCTT
GGACCGAATTCGGAAACTGGCTGACCAGTGCACAGGTCTTCAGGGCTTCTTGGTTTTCCA
CAGCTTTGGCGGGGGAACGGGTTCTGGGTTCACCTCCCTGCTGATGGAACGTCTCTCTGT
CGATTATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCAC
AGCTGTAGTTGAGCCCTACAACTCCATCCTCACCACCCACACCACCCTGGAGCACTCTGA
TTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTCGTAGAAACCTCGATAT
TGAACGCCCAACCTACACTAATCTGAACCGCCTTATTAGCCAAATTGTGTCCTCCATCAC
TGCTTCCCTGAGGTTTGATGGGGCCCTGAACGTTGATCTGACAGAATTCCAGACCAACCT
GGTGCCCTACCCCCGCATCCATTTCCCTCTGGCCACATACGCCCCTGTCATCTCTGCTGA
GAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACTAATGCTTGCTTTGAGCCAGC
CAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCCTGCTGCCTGTTGTA
CCGTGGTGACGTGGTTCCCAAAGACGTCAATGCTGCCATTGCCACCATCAAGACCAAGCG
CAGCATCCAGTTTGTGGACTGGTGCCCCACTGGCTTCAAGGTTGGCATTAATTACCAGCC
CCCCACTGTGGTCCCTGGTGGAGACCTGGCCAAAGTACAGCGGGCAGTGTGCATGCTGAG
CAACACCACAGCCATCGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTA
TGCCAAGCGTGCCTTTGTTCACTGGTACGTGGGTGAGGGCATGGAGGAAGGAGAGTTTTC
TGAGGCCCGTGAGGACATGGCTGCCCTTGAGAAGGATTACGAGGAGGTTGGTGTGGATTC
TGTTGAAGGAGAGGGAGAGGAAGAAGGCGAGGAATACTAATTACCATTCCTTTAAGCCCT
GCAGCATGTCATACGCAGAACTTCAGCTTCAGCATAAGCTGACAGGAGTAAAAGCTTTCT
GATTAGATTGTCTTCACTTTCAACTGTGATCATGTATTTTCCATGTGTACCTGTAAGTTT
TTTTCTGTCATGTCTCAAAAAGTAATTCATTTCTCTGGGTTTGAATAAAGTATTCCCTGT
CTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCTCGACTCCGCTGCTGCTCTCAATACTTCTCCCTACTCACCTCGACTCTTAGCTTGT
CGGGGACGGTAACCAGGACTCGGTGTCTACTCCTGTTGCCTGCGCTTGCTGACCGGTAAC
CACCATGCGTGAGTGCATCTCCATCCACGTTGGCCAAGCTGGTGTCCAGATCGGCAATGC
CTGCTGGGAGCTCTACTGCCTGGAACACGGCATCCAGCCCGATGGCCAGATGCCGAGTGA
CAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCAGTGAGACAGGCGCTGG
CAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACAGTCATTGATGAAGTTCG
CACTGGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAGGAAGATGC
TGCCAATAACTATGCCCGAGGTCACTACACCATTGGCAAGGAGATCATTGACCTCGTCTT
GGACCGAATTCGGAAACTGGCTGACCAGTGCACAGGTCTTCAGGGCTTCTTGGTTTTCCA
CAGCTTTGGCGGGGGAACGGGTTCTGGGTTCACCTCCCTGCTGATGGAACGTCTCTCTGT
CGATTATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCAC
AGCTGTAGTTGAGCCCTACAACTCCATCCTCACCACCCACACCACCCTGGAGCACTCTGA
TTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTCGTAGAAACCTCGATAT
TGAACGCCCAACCTACACTAATCTGAACCGCCTTATTAGCCAAATTGTGTCCTCCATCAC
TGCTTCCCTGAGGTTTGATGGGGCCCTGAACGTTGATCTGACAGAATTCCAGACCAACCT
GGTGCCCTACCCCCGCATCCATTTCCCTCTGGCCACATACGCCCCTGTCATCTCTGCTGA
GAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACTAATGCTTGCTTTGAGCCAGC
CAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCCTGCTGCCTGTTGTA
CCGTGGTGACGTGGTTCCCAAAGACGTCAATGCTGCCATTGCCACCATCAAGACCAAGCG
CAGCATCCAGTTTGTGGACTGGTGCCCCACTGGCTTCAAGGTTGGCATTAATTACCAGCC
CCCCACTGTGGTCCCTGGTGGAGACCTGGCCAAAGTACAGCGGGCAGTGTGCATGCTGAG
CAACACCACAGCCATCGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTA
TGCCAAGCGTGCCTTTGTTCACTGGTACGTGGGTGAGGGCATGGAGGAAGGAGAGTTTTC
TGAGGCCCGTGAGGACATGGCTGCCCTTGAGAAGGATTACGAGGAGGTTGGTGTGGATTC
TGTTGAAGGAGAGGGAGAGGAAGAAGGCGAGGAATACTAATTACCATTCCTTTAAGCCCT
GCAGCATGTCATACGCAGAACTTCAGCTTCAGCATAAGCTGACAGGAGTAAAAGCTTTCT
GATTAGATTGTCTTCACTTTCAACTGTGATCATGTATTTTCCATGTGTACCTGTAAGTTT
TTTTCTGTCATGTCTCAAAAAGTAATTCATTTCTCTGGGTTTGAATAAAGTATTCCCTGT
CTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               TBAK_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               TBAK_HUMAN

Predicted RNA structure(s): 9 entry(ies)

More info

Predicted RNA structure(s): 9 entry(ies)

Help | Less info


               
               152-1321, - strand, RNAz p=0.990293
               

               
               154-313, - strand, RNAz p=0.983272
               

               
               350-481, - strand, RNAz p=0.9398
               

               
               512-631, - strand, RNAz p=0.526704
               

               
               523-642, - strand, RNAz p=0.593237
               

               
               672-791, - strand, RNAz p=0.925332
               

               
               683-842, - strand, RNAz p=0.989468
               

               
               872-1223, - strand, RNAz p=0.998556
               

               
               883-1042, - strand, RNAz p=0.998143

Predicted RNA structure(s): 9 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-1321, - strand, RNAz p=0.990293
               

               
               154-313, - strand, RNAz p=0.983272
               

               
               350-481, - strand, RNAz p=0.9398
               

               
               512-631, - strand, RNAz p=0.526704
               

               
               523-642, - strand, RNAz p=0.593237
               

               
               672-791, - strand, RNAz p=0.925332
               

               
               683-842, - strand, RNAz p=0.989468
               

               
               872-1223, - strand, RNAz p=0.998556
               

               
               883-1042, - strand, RNAz p=0.998143

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               37-1640, gnl|bosTau2|chr7 (293082-291508)
               

               
               37-1640, gnl|Hg17|chr11 (89655386-89656969)
               

               
               37-1640, gnl|Mm7|chr9 (31838329-31836749)
               


               
               125-1480, gnl|bosTau2|chr10 (46593786-46592440)
               

               
               125-1480, gnl|Hg17|chr12 (47869029-47865060)
               

               
               125-1480, gnl|Mm7|chr15 (98938714-98935293)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-1640, gnl|bosTau2|chr7 (293082-291508)
               

               
               37-1640, gnl|Hg17|chr11 (89655386-89656969)
               

               
               37-1640, gnl|Mm7|chr9 (31838329-31836749)
               


               
               125-1480, gnl|bosTau2|chr10 (46593786-46592440)
               

               
               125-1480, gnl|Hg17|chr12 (47869029-47865060)
               

               
               125-1480, gnl|Mm7|chr15 (98938714-98935293)

Expressed library(ies): 91 entry(ies)

More info

Expressed library(ies): 91 entry(ies)

Help | Less info


               
               ece (23.6184)
               

               
               ecc (21.7416)
               

               
               ebs (17.0354)
               

               
               fcc (7.91139)
               

               
               fbs (7.1892)
               

               
               cje (6.93985)
               

               
               nlu (6.90052)
               

               
               eep (5.76051)
               

               
               cov (5.55042)
               

               
               eye (5.28559)
               

               
               eru (5.04202)
               

               
               hyp (4.42794)
               

               
               cut (4.41801)
               

               
               fhi (4.40902)
               

               
               cbe (4.30622)
               

               
               ese (4.30108)
               

               
               sto (4.13595)
               

               
               che (4.08942)
               

               
               spc (4.08117)
               

               
               fty (4.04431)
               

               
               fce (3.53069)
               

               
               ova (3.48657)
               

               
               elu (3.46821)
               

               
               bla (3.23303)
               

               
               ill (3.16067)
               

               
               cag (2.87269)
               

               
               csk (2.81492)
               

               
               nco (2.74947)
               

               
               cly (2.53348)
               

               
               spl (2.29095)
               

               
               cty (2.28976)
               

               
               csp (2.25661)
               

               
               nbm (2.18514)
               

               
               nmm (2.12483)
               

               
               cmu (2.05033)
               

               
               jca (1.93732)
               

               
               nca (1.91623)
               

               
               pgl (1.89573)
               

               
               cst (1.82047)
               

               
               cki (1.81758)
               

               
               mcp (1.70648)
               

               
               eje (1.68017)
               

               
               nje (1.6592)
               

               
               nep (1.65532)
               

               
               med (1.62753)
               

               
               aor (1.56219)
               

               
               eli (1.36633)
               

               
               lnt (1.28077)
               

               
               amn (1.25313)
               

               
               sme (1.22175)
               

               
               ssp (1.21968)
               

               
               ski (1.17388)
               

               
               col (1.17005)
               

               
               sug (1.14562)
               

               
               ute (1.06228)
               

               
               rec (1.03842)
               

               
               jej (0.989218)
               

               
               hlv (0.974795)
               

               
               fat (0.884564)
               

               
               fli (0.811524)
               

               
               fco (0.78604)
               

               
               cbr (0.767853)
               

               
               liv (0.731422)
               

               
               clu (0.717875)
               

               
               pty (0.713572)
               

               
               duo (0.691204)
               

               
               mas (0.630915)
               

               
               tra (0.61546)
               

               
               hea (0.613497)
               

               
               gul (0.532765)
               

               
               ton (0.526501)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               thg (0.507164)
               

               
               tbr (0.462535)
               

               
               nms (0.427716)
               

               
               ste (0.405625)
               

               
               mgm (0.360685)
               

               
               mga (0.32041)
               

               
               cli (0.305623)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               pla (0.133672)
               

               
               ldo (0.0970026)

Expressed library(ies): 91 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (23.6184)
               

               
               ecc (21.7416)
               

               
               ebs (17.0354)
               

               
               fcc (7.91139)
               

               
               fbs (7.1892)
               

               
               cje (6.93985)
               

               
               nlu (6.90052)
               

               
               eep (5.76051)
               

               
               cov (5.55042)
               

               
               eye (5.28559)
               

               
               eru (5.04202)
               

               
               hyp (4.42794)
               

               
               cut (4.41801)
               

               
               fhi (4.40902)
               

               
               cbe (4.30622)
               

               
               ese (4.30108)
               

               
               sto (4.13595)
               

               
               che (4.08942)
               

               
               spc (4.08117)
               

               
               fty (4.04431)
               

               
               fce (3.53069)
               

               
               ova (3.48657)
               

               
               elu (3.46821)
               

               
               bla (3.23303)
               

               
               ill (3.16067)
               

               
               cag (2.87269)
               

               
               csk (2.81492)
               

               
               nco (2.74947)
               

               
               cly (2.53348)
               

               
               spl (2.29095)
               

               
               cty (2.28976)
               

               
               csp (2.25661)
               

               
               nbm (2.18514)
               

               
               nmm (2.12483)
               

               
               cmu (2.05033)
               

               
               jca (1.93732)
               

               
               nca (1.91623)
               

               
               pgl (1.89573)
               

               
               cst (1.82047)
               

               
               cki (1.81758)
               

               
               mcp (1.70648)
               

               
               eje (1.68017)
               

               
               nje (1.6592)
               

               
               nep (1.65532)
               

               
               med (1.62753)
               

               
               aor (1.56219)
               

               
               eli (1.36633)
               

               
               lnt (1.28077)
               

               
               amn (1.25313)
               

               
               sme (1.22175)
               

               
               ssp (1.21968)
               

               
               ski (1.17388)
               

               
               col (1.17005)
               

               
               sug (1.14562)
               

               
               ute (1.06228)
               

               
               rec (1.03842)
               

               
               jej (0.989218)
               

               
               hlv (0.974795)
               

               
               fat (0.884564)
               

               
               fli (0.811524)
               

               
               fco (0.78604)
               

               
               cbr (0.767853)
               

               
               liv (0.731422)
               

               
               clu (0.717875)
               

               
               pty (0.713572)
               

               
               duo (0.691204)
               

               
               mas (0.630915)
               

               
               tra (0.61546)
               

               
               hea (0.613497)
               

               
               gul (0.532765)
               

               
               ton (0.526501)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               thg (0.507164)
               

               
               tbr (0.462535)
               

               
               nms (0.427716)
               

               
               ste (0.405625)
               

               
               mgm (0.360685)
               

               
               mga (0.32041)
               

               
               cli (0.305623)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               pla (0.133672)
               

               
               ldo (0.0970026)

	152-1321, - strand, RNAz p=0.990293
	154-313, - strand, RNAz p=0.983272
	350-481, - strand, RNAz p=0.9398
	512-631, - strand, RNAz p=0.526704
	523-642, - strand, RNAz p=0.593237
	672-791, - strand, RNAz p=0.925332
	683-842, - strand, RNAz p=0.989468
	872-1223, - strand, RNAz p=0.998556
	883-1042, - strand, RNAz p=0.998143

	37-1640, gnl\|bosTau2\|chr7 (293082-291508)
	37-1640, gnl\|Hg17\|chr11 (89655386-89656969)
	37-1640, gnl\|Mm7\|chr9 (31838329-31836749)

	125-1480, gnl\|bosTau2\|chr10 (46593786-46592440)
	125-1480, gnl\|Hg17\|chr12 (47869029-47865060)
	125-1480, gnl\|Mm7\|chr15 (98938714-98935293)

	ece (23.6184)
	ecc (21.7416)
	ebs (17.0354)
	fcc (7.91139)
	fbs (7.1892)
	cje (6.93985)
	nlu (6.90052)
	eep (5.76051)
	cov (5.55042)
	eye (5.28559)
	eru (5.04202)
	hyp (4.42794)
	cut (4.41801)
	fhi (4.40902)
	cbe (4.30622)
	ese (4.30108)
	sto (4.13595)
	che (4.08942)
	spc (4.08117)
	fty (4.04431)
	fce (3.53069)
	ova (3.48657)
	elu (3.46821)
	bla (3.23303)
	ill (3.16067)
	cag (2.87269)
	csk (2.81492)
	nco (2.74947)
	cly (2.53348)
	spl (2.29095)
	cty (2.28976)
	csp (2.25661)
	nbm (2.18514)
	nmm (2.12483)
	cmu (2.05033)
	jca (1.93732)
	nca (1.91623)
	pgl (1.89573)
	cst (1.82047)
	cki (1.81758)
	mcp (1.70648)
	eje (1.68017)
	nje (1.6592)
	nep (1.65532)
	med (1.62753)
	aor (1.56219)
	eli (1.36633)
	lnt (1.28077)
	amn (1.25313)
	sme (1.22175)
	ssp (1.21968)
	ski (1.17388)
	col (1.17005)
	sug (1.14562)
	ute (1.06228)
	rec (1.03842)
	jej (0.989218)
	hlv (0.974795)
	fat (0.884564)
	fli (0.811524)
	fco (0.78604)
	cbr (0.767853)
	liv (0.731422)
	clu (0.717875)
	pty (0.713572)
	duo (0.691204)
	mas (0.630915)
	tra (0.61546)
	hea (0.613497)
	gul (0.532765)
	ton (0.526501)
	sin (0.524843)
	pro (0.512033)
	thg (0.507164)
	tbr (0.462535)
	nms (0.427716)
	ste (0.405625)
	mgm (0.360685)
	mga (0.32041)
	cli (0.305623)
	cte (0.29274)
	lin (0.291206)
	kid (0.259471)
	ret (0.257467)
	pan (0.23596)
	mgp (0.230681)
	cbl (0.229595)
	tes (0.207814)
	sag (0.182715)
	pla (0.133672)
	ldo (0.0970026)