Ss1.1-Tra1-TCH01D050002.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAATGGCCGCGGCCTAGCGGTGGCCCGTTGGAGGCGTCTCAGGCGCTCGGGCCCCTCGG CGTATCCTGGGCGCCGAGAAAGAAGCGCTCCTGGCTGCACGCGCCGGCCGTCCCGCAGCG CAGACCCCTGCGGCCATGGCACCCAGGCTGGCCCCCCTCGGTGGCCTGGCTGCCCGCTGC CTCTGGCTCCTGGGGGTGGCCCTTCTGATGGACGCGTCAGCCCGGCCTGCCAACCACTCG TCTGCTCGAGAGAGAGCGGGCCACAGGGAGGAAGAGGAGATCCTGCCCCCAGACCACCTG ACCGGGGTGAAGCTGGAGATGGACGGGCACCTCAACAAGGATTTCCACCAGGAGGTCTTC CTGGGCAAGGACACGGGCGGCTTCGAGGAGGACGCAGAGCCTCGGAGGAGCCGGCGGAAG CTGATGGTTATCTTCTCCAAGGTGGACCTGAACACGGACAGGAGGATCAGCGCCAAGGAG ATGCAGCGCTGGATCATGGAGAAGACGGCCGAGCACTTCCAGCAGGCCGTCGCCGAGAGC AAGATGCATTTCAGCGCCGTGGACCCCGATGGCGACGGCCGTGTGTCCTGGGATGAGTAC CGGGTGAAGTTTTTGGCGAGCAAAGGCCACGATGAGAGAGAAATCGCTGATAAGATAAAG AATAAGTGGGACCTGAACATCGATGAAGAGACACAGGAAGTCCTGGAGAACCTCAAAGAC CGCTGGTATCAGGCGGACAGTCCCCCCCCGGACCTGCTGCTGACCGAGAAGGAGTTCCTG TCCTTCCTGCACCCCGAGCACAGCCGTGGCATGCTCCAGTTCATGGCCAAGGAGATCATC CGGGACCTGGACCAGGATGGTGACAAGAGGCTCTCGCTGCCCGAGTTCATCTCTCTGCCC GCGGGCACCGTGGAGAACCAGCAAGGCCAGGACATTGACGACGGCTGGGTGAGGGACAGG AGGAGGGAGTTTGAGGAACTGATTGATGCCGACCACGACGGGATCGTGACCATGGCGGAG CTGGAGGACTACATGGACCCCATGAACGAGTTCAGTGCCCTCAACGAGGCCAAGCAGATG ATCGCCGTCGCCGACGAGAACCAGAACCACTACCTGGAGCCTGAGGAGGTGCTCAAGTAC AGCGAGTTCTTCACGGGCAGCAAGCTGGTGGACTACGCCCGCAGCGTGCACGAGGAGTTC TGACCCCACGCCGCCCCCGCAGCGTGTCGTCCCGCATCGTCGCTGCACCATGCTTCTGAG AACTGCAGCCCATCTGCGGAAGCCGCTGCCCCGTCGCCCGCGCTCACGCACCTCGGGGGG CACCGCAGCTCCTGCTGTTTCCTGGAAAACTGAAAGATGTTTGCATTGCTCTGCCGGCCG GGCTGCTCCGCCTGTGGGGGCGGCTGTGACCGCTGCCGGCCCCTCCGTGTTCGGCCTCCG AGAAAACGTGAACACCCGCGACGAGAATCTCATTAATGTACTTTAAAATACAGTTGCCTT TTTCTCCTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAATGGCCGCGGCCTAGCGGTGGCCCGTTGGAGGCGTCTCAGGCGCTCGGGCCCCTCGG CGTATCCTGGGCGCCGAGAAAGAAGCGCTCCTGGCTGCACGCGCCGGCCGTCCCGCAGCG CAGACCCCTGCGGCCATGGCACCCAGGCTGGCCCCCCTCGGTGGCCTGGCTGCCCGCTGC CTCTGGCTCCTGGGGGTGGCCCTTCTGATGGACGCGTCAGCCCGGCCTGCCAACCACTCG TCTGCTCGAGAGAGAGCGGGCCACAGGGAGGAAGAGGAGATCCTGCCCCCAGACCACCTG ACCGGGGTGAAGCTGGAGATGGACGGGCACCTCAACAAGGATTTCCACCAGGAGGTCTTC CTGGGCAAGGACACGGGCGGCTTCGAGGAGGACGCAGAGCCTCGGAGGAGCCGGCGGAAG CTGATGGTTATCTTCTCCAAGGTGGACCTGAACACGGACAGGAGGATCAGCGCCAAGGAG ATGCAGCGCTGGATCATGGAGAAGACGGCCGAGCACTTCCAGCAGGCCGTCGCCGAGAGC AAGATGCATTTCAGCGCCGTGGACCCCGATGGCGACGGCCGTGTGTCCTGGGATGAGTAC CGGGTGAAGTTTTTGGCGAGCAAAGGCCACGATGAGAGAGAAATCGCTGATAAGATAAAG AATAAGTGGGACCTGAACATCGATGAAGAGACACAGGAAGTCCTGGAGAACCTCAAAGAC CGCTGGTATCAGGCGGACAGTCCCCCCCCGGACCTGCTGCTGACCGAGAAGGAGTTCCTG TCCTTCCTGCACCCCGAGCACAGCCGTGGCATGCTCCAGTTCATGGCCAAGGAGATCATC CGGGACCTGGACCAGGATGGTGACAAGAGGCTCTCGCTGCCCGAGTTCATCTCTCTGCCC GCGGGCACCGTGGAGAACCAGCAAGGCCAGGACATTGACGACGGCTGGGTGAGGGACAGG AGGAGGGAGTTTGAGGAACTGATTGATGCCGACCACGACGGGATCGTGACCATGGCGGAG CTGGAGGACTACATGGACCCCATGAACGAGTTCAGTGCCCTCAACGAGGCCAAGCAGATG ATCGCCGTCGCCGACGAGAACCAGAACCACTACCTGGAGCCTGAGGAGGTGCTCAAGTAC AGCGAGTTCTTCACGGGCAGCAAGCTGGTGGACTACGCCCGCAGCGTGCACGAGGAGTTC TGACCCCACGCCGCCCCCGCAGCGTGTCGTCCCGCATCGTCGCTGCACCATGCTTCTGAG AACTGCAGCCCATCTGCGGAAGCCGCTGCCCCGTCGCCCGCGCTCACGCACCTCGGGGGG CACCGCAGCTCCTGCTGTTTCCTGGAAAACTGAAAGATGTTTGCATTGCTCTGCCGGCCG GGCTGCTCCGCCTGTGGGGGCGGCTGTGACCGCTGCCGGCCCCTCCGTGTTCGGCCTCCG AGAAAACGTGAACACCCGCGACGAGAATCTCATTAATGTACTTTAAAATACAGTTGCCTT TTTCTCCTAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 435-578, gnl|bosTau2|chr16 (37991904-37992047) | |
| 435-578, gnl|canFam2|chr5 (59414681-59414787) | |
| 435-578, gnl|danRer3|chr7 (25018235-25018341) | |
| 435-578, gnl|echTel1|scaffold_61438 (138-26) | |
| 435-578, gnl|fr1|chrUn (285803042-285802936) | |
| 435-578, gnl|galGal2|chr21 (2435996-2435890) | |
| 435-578, gnl|hg17|chr1 (1199133-1199239) | |
| 435-578, gnl|Hg17|chr1 (1199277-1199134) | |
| 435-578, gnl|mm7|chr4 (154989080-154988974) | |
| 435-578, gnl|Mm7|chr4 (154988930-154989077) | |
| 435-578, gnl|panTro1|chr1 (1085356-1085462) | |
| 435-578, gnl|rheMac2|chr1 (4297253-4297359) | |
| 435-578, gnl|rn3|chr5 (172853549-172853443) | |
| 435-578, gnl|xenTro1|scaffold_414 (992262-992156) | |
| 692-850, gnl|bosTau2|chr16 (37997589-37997747) | |
| 692-850, gnl|canFam2|chr5 (59410902-59411079) | |
| 692-850, gnl|danRer3|chr7 (25017714-25017892) | |
| 692-850, gnl|echTel1|scaffold_61438 (2408-2232) | |
| 692-850, gnl|fr1|chrUn (285803482-285803307) | |
| 692-850, gnl|galGal2|chr21 (2438826-2438660) | |
| 692-850, gnl|hg17|chr1 (1194070-1194248) | |
| 692-850, gnl|Hg17|chr1 (1194230-1194072) | |
| 692-850, gnl|mm7|chr4 (154998491-154998314) | |
| 692-850, gnl|Mm7|chr4 (154998329-154998487) | |
| 692-850, gnl|monDom2|scaffold_219 (548704-548884) | |
| 692-850, gnl|panTro1|chr1 (1079727-1079905) | |
| 692-850, gnl|rheMac2|chr1 (4292061-4292239) | |
| 692-850, gnl|rn3|chr5 (172862284-172862107) | |
| 692-850, gnl|xenTro1|scaffold_414 (993703-993540) | |
| 1022-1223, gnl|bosTau2|chr16 (37998842-37999043) | |
| 1022-1223, gnl|Hg17|chr1 (1192996-1192726) | |
| 1022-1223, gnl|Mm7|chr4 (154999311-154999494) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 435-578, gnl|bosTau2|chr16 (37991904-37992047) | |
| 435-578, gnl|canFam2|chr5 (59414681-59414787) | |
| 435-578, gnl|danRer3|chr7 (25018235-25018341) | |
| 435-578, gnl|echTel1|scaffold_61438 (138-26) | |
| 435-578, gnl|fr1|chrUn (285803042-285802936) | |
| 435-578, gnl|galGal2|chr21 (2435996-2435890) | |
| 435-578, gnl|hg17|chr1 (1199133-1199239) | |
| 435-578, gnl|Hg17|chr1 (1199277-1199134) | |
| 435-578, gnl|mm7|chr4 (154989080-154988974) | |
| 435-578, gnl|Mm7|chr4 (154988930-154989077) | |
| 435-578, gnl|panTro1|chr1 (1085356-1085462) | |
| 435-578, gnl|rheMac2|chr1 (4297253-4297359) | |
| 435-578, gnl|rn3|chr5 (172853549-172853443) | |
| 435-578, gnl|xenTro1|scaffold_414 (992262-992156) | |
| 692-850, gnl|bosTau2|chr16 (37997589-37997747) | |
| 692-850, gnl|canFam2|chr5 (59410902-59411079) | |
| 692-850, gnl|danRer3|chr7 (25017714-25017892) | |
| 692-850, gnl|echTel1|scaffold_61438 (2408-2232) | |
| 692-850, gnl|fr1|chrUn (285803482-285803307) | |
| 692-850, gnl|galGal2|chr21 (2438826-2438660) | |
| 692-850, gnl|hg17|chr1 (1194070-1194248) | |
| 692-850, gnl|Hg17|chr1 (1194230-1194072) | |
| 692-850, gnl|mm7|chr4 (154998491-154998314) | |
| 692-850, gnl|Mm7|chr4 (154998329-154998487) | |
| 692-850, gnl|monDom2|scaffold_219 (548704-548884) | |
| 692-850, gnl|panTro1|chr1 (1079727-1079905) | |
| 692-850, gnl|rheMac2|chr1 (4292061-4292239) | |
| 692-850, gnl|rn3|chr5 (172862284-172862107) | |
| 692-850, gnl|xenTro1|scaffold_414 (993703-993540) | |
| 1022-1223, gnl|bosTau2|chr16 (37998842-37999043) | |
| 1022-1223, gnl|Hg17|chr1 (1192996-1192726) | |
| 1022-1223, gnl|Mm7|chr4 (154999311-154999494) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| cov (0.925069) | |
| jca (0.45584) | |
| cag (0.453583) | |
| nmm (0.398406) | |
| col (0.390016) | |
| nje (0.33184) | |
| nco (0.323468) | |
| jej (0.296765) | |
| cga (0.279096) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ton (0.1755) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.925069) | |
| jca (0.45584) | |
| cag (0.453583) | |
| nmm (0.398406) | |
| col (0.390016) | |
| nje (0.33184) | |
| nco (0.323468) | |
| jej (0.296765) | |
| cga (0.279096) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ton (0.1755) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) |