Ss1.1-Tra1-TCH01D050043.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGATCACTACCAGCTACGACTACGATGCACCCATCTCTGAAGCAGGGGACCCCACACCTA AGTTTTTTGCTATCCGAAATGTCATCAGCAAGTTCCAGGAAATTCCCTTGGGACCTTTAC CTCCCCCCAGCCCCAAGATGATGCTTGGACCTCTGACCCTACAATTGGATGGGGATTTGC TGGCTTTCCTAGATTTCCTGTGCCCACAAGGGCCCATCCATTCAATCTTGCCAATGACCT TTGAGGCTGTCAACCAGGACCGTGGCTTTATGTTGTACCGGACCCATCTGACCCATACTG TTTCTGAGCCAACACAGTTCTGGGTGCCAAACAATGGAGTCCATGACCGTGCCTACGTCA TGGTGGATGGGGTGTTTCAAGGTGTTTTGGAAAGAAACATGGAACACAACCTATTTTTGA TGGGGAAAAGGGGAGCCAAACTGGATGTTTTGCTGGAGAACATGGGGAGGCTCAGTTTCG GGTCTAACAGCAGTGACTTCAAGGGCCTATTAGAGCCGCCCATTCTGGGGCAAACAATCC TTACCCCGTGGCTGATGTTCCCTCTGAAAGTGGATAATCTTGTAAAGTGGTGGTTTCCCA TCCAGTTGCTAAAAACCCCCCATCCTCAAATTCCCTCTGGCCCCACCTTCTACTCTACGA CCTTTCCAGTTTTCGACTCAGGCGGGGACACATTCCTCTATCTACCTGGATGGACCAAGG GCCAAGTCTGGATCAATGGGTTTAACTTGGGCCGCTACTGGACAAAGCGGGGCCCACAGC AGACCCTCTACGTGCCAAGACCCCTGCTCTTTCCTAGGGGAGCCCTCAACAAAATCACAG TGCTGGAGCTAGAAAATGTGCCTCCTCAGCCCCAAATCCAGTTCCTGGATAGGCCTATCC TCAATAGCACTCTGCATAAGACATACATCTATTCCCTCTCAACTGATATACAAGGTGACT CTGAACCAATGGAGTTGAGTGGGCACTGAAAGAAAGGTAACCCTTGGACCTGGGACACGG AGCGGGCAGGATCCCTGGTGCTATGCTAGCCACAGTGACCACAAGGAACCAAAGGCCACA GGCCTGAGTCTAAGTACAAGGGCAGCTTCCTTGCCAAACTTTATTGTGATTAAAGTTCCG GAGACAGTACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGATCACTACCAGCTACGACTACGATGCACCCATCTCTGAAGCAGGGGACCCCACACCTA AGTTTTTTGCTATCCGAAATGTCATCAGCAAGTTCCAGGAAATTCCCTTGGGACCTTTAC CTCCCCCCAGCCCCAAGATGATGCTTGGACCTCTGACCCTACAATTGGATGGGGATTTGC TGGCTTTCCTAGATTTCCTGTGCCCACAAGGGCCCATCCATTCAATCTTGCCAATGACCT TTGAGGCTGTCAACCAGGACCGTGGCTTTATGTTGTACCGGACCCATCTGACCCATACTG TTTCTGAGCCAACACAGTTCTGGGTGCCAAACAATGGAGTCCATGACCGTGCCTACGTCA TGGTGGATGGGGTGTTTCAAGGTGTTTTGGAAAGAAACATGGAACACAACCTATTTTTGA TGGGGAAAAGGGGAGCCAAACTGGATGTTTTGCTGGAGAACATGGGGAGGCTCAGTTTCG GGTCTAACAGCAGTGACTTCAAGGGCCTATTAGAGCCGCCCATTCTGGGGCAAACAATCC TTACCCCGTGGCTGATGTTCCCTCTGAAAGTGGATAATCTTGTAAAGTGGTGGTTTCCCA TCCAGTTGCTAAAAACCCCCCATCCTCAAATTCCCTCTGGCCCCACCTTCTACTCTACGA CCTTTCCAGTTTTCGACTCAGGCGGGGACACATTCCTCTATCTACCTGGATGGACCAAGG GCCAAGTCTGGATCAATGGGTTTAACTTGGGCCGCTACTGGACAAAGCGGGGCCCACAGC AGACCCTCTACGTGCCAAGACCCCTGCTCTTTCCTAGGGGAGCCCTCAACAAAATCACAG TGCTGGAGCTAGAAAATGTGCCTCCTCAGCCCCAAATCCAGTTCCTGGATAGGCCTATCC TCAATAGCACTCTGCATAAGACATACATCTATTCCCTCTCAACTGATATACAAGGTGACT CTGAACCAATGGAGTTGAGTGGGCACTGAAAGAAAGGTAACCCTTGGACCTGGGACACGG AGCGGGCAGGATCCCTGGTGCTATGCTAGCCACAGTGACCACAAGGAACCAAAGGCCACA GGCCTGAGTCTAAGTACAAGGGCAGCTTCCTTGCCAAACTTTATTGTGATTAAAGTTCCG GAGACAGTACCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 371-504, gnl|bosTau2|chr2 (65179439-65179306) | |
| 371-504, gnl|canFam2|chr37 (28784797-28784952) | |
| 371-504, gnl|danRer3|chr9 (13965842-13965998) | |
| 371-504, gnl|dasNov1|scaffold_7517 (40616-40771) | |
| 371-504, gnl|echTel1|scaffold_308242 (118971-119127) | |
| 371-504, gnl|fr1|chrUn (26037389-26037246) | |
| 371-504, gnl|galGal2|chr7 (23005318-23005172) | |
| 371-504, gnl|hg17|chr2 (219928037-219928193) | |
| 371-504, gnl|Hg17|chr2 (219928185-219928052) | |
| 371-504, gnl|loxAfr1|scaffold_145 (83314-83469) | |
| 371-504, gnl|mm7|chr1 (75423566-75423722) | |
| 371-504, gnl|Mm7|chr1 (75423714-75423581) | |
| 371-504, gnl|monDom2|scaffold_39 (1320188-1320032) | |
| 371-504, gnl|oryCun1|scaffold_198528 (110983-111135) | |
| 371-504, gnl|panTro1|chr13 (110090964-110091121) | |
| 371-504, gnl|rheMac2|chr12 (83091917-83092073) | |
| 371-504, gnl|rn3|chr9 (74629351-74629507) | |
| 371-504, gnl|tetNig1|chr2 (12526464-12526324) | |
| 371-504, gnl|xenTro1|scaffold_31 (3027085-3026940) | |
| 715-1152, gnl|bosTau2|chr2 (65178705-65178282) | |
| 715-1152, gnl|Hg17|chr2 (219927579-219926833) | |
| 715-1152, gnl|Mm7|chr1 (75423014-75422593) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 371-504, gnl|bosTau2|chr2 (65179439-65179306) | |
| 371-504, gnl|canFam2|chr37 (28784797-28784952) | |
| 371-504, gnl|danRer3|chr9 (13965842-13965998) | |
| 371-504, gnl|dasNov1|scaffold_7517 (40616-40771) | |
| 371-504, gnl|echTel1|scaffold_308242 (118971-119127) | |
| 371-504, gnl|fr1|chrUn (26037389-26037246) | |
| 371-504, gnl|galGal2|chr7 (23005318-23005172) | |
| 371-504, gnl|hg17|chr2 (219928037-219928193) | |
| 371-504, gnl|Hg17|chr2 (219928185-219928052) | |
| 371-504, gnl|loxAfr1|scaffold_145 (83314-83469) | |
| 371-504, gnl|mm7|chr1 (75423566-75423722) | |
| 371-504, gnl|Mm7|chr1 (75423714-75423581) | |
| 371-504, gnl|monDom2|scaffold_39 (1320188-1320032) | |
| 371-504, gnl|oryCun1|scaffold_198528 (110983-111135) | |
| 371-504, gnl|panTro1|chr13 (110090964-110091121) | |
| 371-504, gnl|rheMac2|chr12 (83091917-83092073) | |
| 371-504, gnl|rn3|chr9 (74629351-74629507) | |
| 371-504, gnl|tetNig1|chr2 (12526464-12526324) | |
| 371-504, gnl|xenTro1|scaffold_31 (3027085-3026940) | |
| 715-1152, gnl|bosTau2|chr2 (65178705-65178282) | |
| 715-1152, gnl|Hg17|chr2 (219927579-219926833) | |
| 715-1152, gnl|Mm7|chr1 (75423014-75422593) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fli (0.202881) | |
| cli (0.152812) | |
| ute (0.132784) | |
| pgl (0.118483) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) | |
| cli (0.152812) | |
| ute (0.132784) | |
| pgl (0.118483) | |
| cty (0.10408) |