Ss1.1-Tra1-TCH01D060039.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCTTCAGCTTGGCTACTCGGTAGGCGCTTTGCGAGCTGGAGGCCGCAGATGGCGGCTT CAGCTTGGCTACGCCTGATTACCCTTGCGAGCTGGACGCTGTTGCCGGTGGATGATGTGA TCAATGGTCTCAGTGAGGAGCAGAAGCAGCTTCGTCAGACCATGACTAAGTTCCTTCAGG AGCACCTAGCCCCCCAGGCCCAGGTTCGTCAGACCATGACTAAGTTCCTTCAGGAGCACC TAGCCCCCCAGGCCCAGGAGATCGACCAAAGCAACGAGTTCAAGAACCTGCGAGAGTTTT GGAAGCAGCTAGGGAACCTGGGGGTCTTGGGCATCACAGCCCCTGTTCAGTACGGCGGCA CTGGCCTGGGCTACCTGGAGCACGTGGTGGTGATGGAGGAGATATCCCGAGCCTCTGGAG CAGTGGGCCTCAGTTACGGTGCCCACTCCAACCTCTGCCTCAACCAAATTGTGCGGAATG GAAACGAGGCCCAGAAGGAGAAGTACCTCCCCAAGGTGAGGAACCGGGAATGAAGGAACA TACTGATATCATGGTGCAGCCACCAGCCATGAAGCTCCTCCCACTGGGAGGGCAGGCCAG ACAAAAAGGGAGATTACTATGTCCTGAATGGCAACAAATTCTGGATCACCAATGGCCCTG ATGCTGATGTCCTTGTTGTCTATGCCAAGACAGATCTGGCTGCTGTGCCACCTTCTCGGG GCATCACAGCCTTCATTGTGGAGAAGGGTATGCCAGGCTTCAGCACCTCCAAGAAGCTGG ACAAGCTGGGGATGAGAGGCTCTAATACCTGTGAGCTGATCTTTGAAGACTGCAAGGTTC CTGCTGTCAACATCCTGGGCCAACTAAGTAAGGGCGTCTACGTGCTGATGAGTGGGCTGG ACCTGGAGCGGCTGGTGCTGGCTGGTGGGCCCCTCGGGCTCATGCAGGCTGTCCTTGACC ACACCATTCCCTACCTGCACATGAGGGAAGCCTTTGGCCAGAAGATCGGCCACTTCCAGT TGATGCAGGGAAAGATGGCAGACATGTACACCCGCCTCATGGCCTGTCGGCAGTATGTCT ACAATGTCGCCAAGGCCTGTGATGAGGGCCACTGTACCCCCAAGGACTGTGCTGGCGTGG TTCTTTACAGTGCCGAGTGTGCCACAAAGGTAGCCCTGGACGGCATCCAGTGTTTGGGTG GCAATGGCTACATCAACGACTTTCCCATGGGCCGATTTCTGCGAGATGCCAAGCTGTATG AGATTGGGGCTGGCACCAGTGAGGTGAGGCGGCTGATCATCGGGAGAGCCTTCAACACAG ACTTCCACTAACCCCAAGATCCTTTGCTTCCTTCCCCGGCACCTCAAGGCCTTTCTCTGG AAGGAGAGATGGGGCAGCTCCTGCCAACCCAGGAAAAACATGCAGTGGCTTCAAATGGAC TTCTCAGGAAGCACGCTGGCTTTTCTGGGGCTCCTTGGATGGCTATGTGCCCTTGCCCTC TCTGAGCCTGATGCCCTCACCTCCCAGGGCAGGTACCTTTATCTCGGGTGTACCTCCGCC AGGGAACCCTGTGCTCAAGCACACCAGAAGCATTGCCACTCTCTATGAATTTGAACTTGA TAGGCTCTTTTCTTTCTGGGGAAAGGTACCCCCCCAAACCTAGCCTTTGTTTCTGCCAGT TTCCAGAGGCATCAGCTCCAGCAGCTTGTGAGTGGGCACTGCCTCTGCAGCAGTCCCTCC TCAATCCTTTTTTTTTTTTTTTTTGCTACCCCACAGTGCATGGAGTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCTTCAGCTTGGCTACTCGGTAGGCGCTTTGCGAGCTGGAGGCCGCAGATGGCGGCTT CAGCTTGGCTACGCCTGATTACCCTTGCGAGCTGGACGCTGTTGCCGGTGGATGATGTGA TCAATGGTCTCAGTGAGGAGCAGAAGCAGCTTCGTCAGACCATGACTAAGTTCCTTCAGG AGCACCTAGCCCCCCAGGCCCAGGTTCGTCAGACCATGACTAAGTTCCTTCAGGAGCACC TAGCCCCCCAGGCCCAGGAGATCGACCAAAGCAACGAGTTCAAGAACCTGCGAGAGTTTT GGAAGCAGCTAGGGAACCTGGGGGTCTTGGGCATCACAGCCCCTGTTCAGTACGGCGGCA CTGGCCTGGGCTACCTGGAGCACGTGGTGGTGATGGAGGAGATATCCCGAGCCTCTGGAG CAGTGGGCCTCAGTTACGGTGCCCACTCCAACCTCTGCCTCAACCAAATTGTGCGGAATG GAAACGAGGCCCAGAAGGAGAAGTACCTCCCCAAGGTGAGGAACCGGGAATGAAGGAACA TACTGATATCATGGTGCAGCCACCAGCCATGAAGCTCCTCCCACTGGGAGGGCAGGCCAG ACAAAAAGGGAGATTACTATGTCCTGAATGGCAACAAATTCTGGATCACCAATGGCCCTG ATGCTGATGTCCTTGTTGTCTATGCCAAGACAGATCTGGCTGCTGTGCCACCTTCTCGGG GCATCACAGCCTTCATTGTGGAGAAGGGTATGCCAGGCTTCAGCACCTCCAAGAAGCTGG ACAAGCTGGGGATGAGAGGCTCTAATACCTGTGAGCTGATCTTTGAAGACTGCAAGGTTC CTGCTGTCAACATCCTGGGCCAACTAAGTAAGGGCGTCTACGTGCTGATGAGTGGGCTGG ACCTGGAGCGGCTGGTGCTGGCTGGTGGGCCCCTCGGGCTCATGCAGGCTGTCCTTGACC ACACCATTCCCTACCTGCACATGAGGGAAGCCTTTGGCCAGAAGATCGGCCACTTCCAGT TGATGCAGGGAAAGATGGCAGACATGTACACCCGCCTCATGGCCTGTCGGCAGTATGTCT ACAATGTCGCCAAGGCCTGTGATGAGGGCCACTGTACCCCCAAGGACTGTGCTGGCGTGG TTCTTTACAGTGCCGAGTGTGCCACAAAGGTAGCCCTGGACGGCATCCAGTGTTTGGGTG GCAATGGCTACATCAACGACTTTCCCATGGGCCGATTTCTGCGAGATGCCAAGCTGTATG AGATTGGGGCTGGCACCAGTGAGGTGAGGCGGCTGATCATCGGGAGAGCCTTCAACACAG ACTTCCACTAACCCCAAGATCCTTTGCTTCCTTCCCCGGCACCTCAAGGCCTTTCTCTGG AAGGAGAGATGGGGCAGCTCCTGCCAACCCAGGAAAAACATGCAGTGGCTTCAAATGGAC TTCTCAGGAAGCACGCTGGCTTTTCTGGGGCTCCTTGGATGGCTATGTGCCCTTGCCCTC TCTGAGCCTGATGCCCTCACCTCCCAGGGCAGGTACCTTTATCTCGGGTGTACCTCCGCC AGGGAACCCTGTGCTCAAGCACACCAGAAGCATTGCCACTCTCTATGAATTTGAACTTGA TAGGCTCTTTTCTTTCTGGGGAAAGGTACCCCCCCAAACCTAGCCTTTGTTTCTGCCAGT TTCCAGAGGCATCAGCTCCAGCAGCTTGTGAGTGGGCACTGCCTCTGCAGCAGTCCCTCC TCAATCCTTTTTTTTTTTTTTTTTGCTACCCCACAGTGCATGGAGTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 416-535, - strand, RNAz p=0.732528 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 416-535, - strand, RNAz p=0.732528 |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 1-149, gnl|bosTau2|chr10 (23793668-23793816) | |
| 1-149, gnl|Hg17|chr15 (38485325-38485464) | |
| 1-149, gnl|Mm7|chr2 (118602874-118603016) | |
| 337-543, gnl|bosTau2|chr10 (23797297-23797503) | |
| 337-543, gnl|Hg17|chr15 (38490110-38490335) | |
| 337-543, gnl|Mm7|chr2 (118612218-118612424) | |
| 609-747, gnl|bosTau2|chr10 (23798997-23799135) | |
| 609-747, gnl|canFam2|chr30 (10577840-10577987) | |
| 609-747, gnl|danRer3|chr17 (32775189-32775330) | |
| 609-747, gnl|dasNov1|scaffold_39185 (3654-3801) | |
| 609-747, gnl|fr1|chrUn (274282953-274282813) | |
| 609-747, gnl|galGal2|chr5 (2664768-2664621) | |
| 609-747, gnl|hg17|chr15 (38491041-38491188) | |
| 609-747, gnl|Hg17|chr15 (38491045-38491183) | |
| 609-747, gnl|loxAfr1|scaffold_19131 (32296-32443) | |
| 609-747, gnl|mm7|chr2 (118614012-118614159) | |
| 609-747, gnl|Mm7|chr2 (118614016-118614154) | |
| 609-747, gnl|monDom2|scaffold_12 (1920099-1919952) | |
| 609-747, gnl|oryCun1|scaffold_214159 (85389-85241) | |
| 609-747, gnl|panTro1|chr16 (38375191-38375338) | |
| 609-747, gnl|rheMac2|chr7 (18752896-18753043) | |
| 609-747, gnl|rn3|chr3 (105283593-105283741) | |
| 609-747, gnl|tetNig1|chr10 (5799198-5799060) | |
| 609-747, gnl|xenTro1|scaffold_933 (403420-403273) | |
| 1017-1136, gnl|bosTau2|chr10 (23802773-23802892) | |
| 1017-1136, gnl|canFam2|chr30 (10582112-10582237) | |
| 1017-1136, gnl|danRer3|chr17 (32777743-32777874) | |
| 1017-1136, gnl|dasNov1|scaffold_39185 (7829-7952) | |
| 1017-1136, gnl|echTel1|scaffold_224025 (949-824) | |
| 1017-1136, gnl|fr1|chrUn (274282202-274282079) | |
| 1017-1136, gnl|galGal2|chr5 (2660140-2660028) | |
| 1017-1136, gnl|hg17|chr15 (38495558-38495683) | |
| 1017-1136, gnl|Hg17|chr15 (38495566-38495685) | |
| 1017-1136, gnl|mm7|chr2 (118618500-118618624) | |
| 1017-1136, gnl|Mm7|chr2 (118618507-118618626) | |
| 1017-1136, gnl|monDom2|scaffold_12 (1912827-1912702) | |
| 1017-1136, gnl|oryCun1|scaffold_214159 (81817-81692) | |
| 1017-1136, gnl|panTro1|chr16 (38379706-38379831) | |
| 1017-1136, gnl|rheMac2|chr7 (18757356-18757481) | |
| 1017-1136, gnl|rn3|chr3 (105288025-105288151) | |
| 1017-1136, gnl|tetNig1|chr10 (5798481-5798359) | |
| 1017-1136, gnl|xenTro1|scaffold_933 (400964-400847) | |
| 1197-1714, gnl|bosTau2|chr10 (23803701-23804233) | |
| 1197-1714, gnl|Hg17|chr15 (38497620-38498225) | |
| 1197-1714, gnl|Mm7|chr2 (118621301-118621873) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-149, gnl|bosTau2|chr10 (23793668-23793816) | |
| 1-149, gnl|Hg17|chr15 (38485325-38485464) | |
| 1-149, gnl|Mm7|chr2 (118602874-118603016) | |
| 337-543, gnl|bosTau2|chr10 (23797297-23797503) | |
| 337-543, gnl|Hg17|chr15 (38490110-38490335) | |
| 337-543, gnl|Mm7|chr2 (118612218-118612424) | |
| 609-747, gnl|bosTau2|chr10 (23798997-23799135) | |
| 609-747, gnl|canFam2|chr30 (10577840-10577987) | |
| 609-747, gnl|danRer3|chr17 (32775189-32775330) | |
| 609-747, gnl|dasNov1|scaffold_39185 (3654-3801) | |
| 609-747, gnl|fr1|chrUn (274282953-274282813) | |
| 609-747, gnl|galGal2|chr5 (2664768-2664621) | |
| 609-747, gnl|hg17|chr15 (38491041-38491188) | |
| 609-747, gnl|Hg17|chr15 (38491045-38491183) | |
| 609-747, gnl|loxAfr1|scaffold_19131 (32296-32443) | |
| 609-747, gnl|mm7|chr2 (118614012-118614159) | |
| 609-747, gnl|Mm7|chr2 (118614016-118614154) | |
| 609-747, gnl|monDom2|scaffold_12 (1920099-1919952) | |
| 609-747, gnl|oryCun1|scaffold_214159 (85389-85241) | |
| 609-747, gnl|panTro1|chr16 (38375191-38375338) | |
| 609-747, gnl|rheMac2|chr7 (18752896-18753043) | |
| 609-747, gnl|rn3|chr3 (105283593-105283741) | |
| 609-747, gnl|tetNig1|chr10 (5799198-5799060) | |
| 609-747, gnl|xenTro1|scaffold_933 (403420-403273) | |
| 1017-1136, gnl|bosTau2|chr10 (23802773-23802892) | |
| 1017-1136, gnl|canFam2|chr30 (10582112-10582237) | |
| 1017-1136, gnl|danRer3|chr17 (32777743-32777874) | |
| 1017-1136, gnl|dasNov1|scaffold_39185 (7829-7952) | |
| 1017-1136, gnl|echTel1|scaffold_224025 (949-824) | |
| 1017-1136, gnl|fr1|chrUn (274282202-274282079) | |
| 1017-1136, gnl|galGal2|chr5 (2660140-2660028) | |
| 1017-1136, gnl|hg17|chr15 (38495558-38495683) | |
| 1017-1136, gnl|Hg17|chr15 (38495566-38495685) | |
| 1017-1136, gnl|mm7|chr2 (118618500-118618624) | |
| 1017-1136, gnl|Mm7|chr2 (118618507-118618626) | |
| 1017-1136, gnl|monDom2|scaffold_12 (1912827-1912702) | |
| 1017-1136, gnl|oryCun1|scaffold_214159 (81817-81692) | |
| 1017-1136, gnl|panTro1|chr16 (38379706-38379831) | |
| 1017-1136, gnl|rheMac2|chr7 (18757356-18757481) | |
| 1017-1136, gnl|rn3|chr3 (105288025-105288151) | |
| 1017-1136, gnl|tetNig1|chr10 (5798481-5798359) | |
| 1017-1136, gnl|xenTro1|scaffold_933 (400964-400847) | |
| 1197-1714, gnl|bosTau2|chr10 (23803701-23804233) | |
| 1197-1714, gnl|Hg17|chr15 (38497620-38498225) | |
| 1197-1714, gnl|Mm7|chr2 (118621301-118621873) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cov (0.396458) | |
| fbs (0.350693) | |
| mas (0.210305) | |
| nep (0.183925) | |
| ill (0.175593) | |
| cli (0.152812) | |
| pty (0.142714) | |
| cly (0.120642) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| fbs (0.350693) | |
| mas (0.210305) | |
| nep (0.183925) | |
| ill (0.175593) | |
| cli (0.152812) | |
| pty (0.142714) | |
| cly (0.120642) |