Non-Coding RNA Search

Ss1.1-Tra1-TCH01D060066.5

Sequence:


               
               GAGGAATGCCTGTGTGTTGCCAGGCACCTGAGCTTTCTGGAGTCAAAAGAATAAGTCATA
GGGGCTGCCAAGTAGTTTGGAAAGTTCATGGTTACCACTGGAAAAACAGCAGACGGTGGT
GGTCAGCAGAGAGATTGTACTCTGAGAGCAGACTAATTCCAATAGAACTGGAGCTGAATG
AACTCTCCTGCTCCTGGGGAAATATGGGAACCTCAGACTCTCCTTGCAAGTCAAGCTTTC
AGATTCGAATTAATGGGCCATTGAAGAGCCGTGTGGGTAGAGTTCCACTGGAGAGGTAGA
CAGAACTCTGGAGCCTTCCTGGAATGGAGCTGTGTGACTATACAGAGACCTTATAACAGA
CACATGCTGTCCCCTGCCAGGGGTCACCTTGAGAGGCATGACAGCTATTCGACTGTGACT
GCCACTTCTCAGAACACCTCTCTTCTGAGCCTCTTTTACAGCATTCTCCAGACCCAGTGT
CTGAACCACTCTGGAAATTCTGCCTTATTATTTCTCACTCACACACATCTTGGAGCAGAT
AGGAAATTATGCAGCTTGCACATCCATCATTTCAAACCCAAATTCCTTTCTGCTGTTAAA
AAAGGTTAAATGCTGTCGTCAAAAAAAAAAAAGAGAAAAAGGAATTTTTTTTTTGATGGT
TGCACATTAAAAACAAAAAAGGAGAGTGGGGAGAAGAAAGTTATATTTCTTGAGGGCTGT
GCCAAGTTGATTGCATTAAAGCCCCATGTAACCCCACAACAGGAGGATGGTGTCACTAGA
GAAGCAATTTGAAGTGCAGCAAGGTCAAATTAGGTGCCTGAGATCATAGAGCTAGTTATA
TGAGAGCTAGAATAAACATCCTGTAGTTTCAGCTAATTATAATACATTTTCTCCAAAAGG
CAAGAATTTGTCCTATTTAGCATGTGCAAAGGCAAGAATTTGTTCTATTTCACATGCGCG
CGTGCACACACACACACTATTCCCTAGAGGGGTGGCAGTTCTCAAGAGTGTATTGAGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAATGCCTGTGTGTTGCCAGGCACCTGAGCTTTCTGGAGTCAAAAGAATAAGTCATA
GGGGCTGCCAAGTAGTTTGGAAAGTTCATGGTTACCACTGGAAAAACAGCAGACGGTGGT
GGTCAGCAGAGAGATTGTACTCTGAGAGCAGACTAATTCCAATAGAACTGGAGCTGAATG
AACTCTCCTGCTCCTGGGGAAATATGGGAACCTCAGACTCTCCTTGCAAGTCAAGCTTTC
AGATTCGAATTAATGGGCCATTGAAGAGCCGTGTGGGTAGAGTTCCACTGGAGAGGTAGA
CAGAACTCTGGAGCCTTCCTGGAATGGAGCTGTGTGACTATACAGAGACCTTATAACAGA
CACATGCTGTCCCCTGCCAGGGGTCACCTTGAGAGGCATGACAGCTATTCGACTGTGACT
GCCACTTCTCAGAACACCTCTCTTCTGAGCCTCTTTTACAGCATTCTCCAGACCCAGTGT
CTGAACCACTCTGGAAATTCTGCCTTATTATTTCTCACTCACACACATCTTGGAGCAGAT
AGGAAATTATGCAGCTTGCACATCCATCATTTCAAACCCAAATTCCTTTCTGCTGTTAAA
AAAGGTTAAATGCTGTCGTCAAAAAAAAAAAAGAGAAAAAGGAATTTTTTTTTTGATGGT
TGCACATTAAAAACAAAAAAGGAGAGTGGGGAGAAGAAAGTTATATTTCTTGAGGGCTGT
GCCAAGTTGATTGCATTAAAGCCCCATGTAACCCCACAACAGGAGGATGGTGTCACTAGA
GAAGCAATTTGAAGTGCAGCAAGGTCAAATTAGGTGCCTGAGATCATAGAGCTAGTTATA
TGAGAGCTAGAATAAACATCCTGTAGTTTCAGCTAATTATAATACATTTTCTCCAAAAGG
CAAGAATTTGTCCTATTTAGCATGTGCAAAGGCAAGAATTTGTTCTATTTCACATGCGCG
CGTGCACACACACACACTATTCCCTAGAGGGGTGGCAGTTCTCAAGAGTGTATTGAGGTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               320-507, - strand, RNAz p=0.993616
               

               
               736-845, - strand, RNAz p=0.870216

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               320-507, - strand, RNAz p=0.993616
               

               
               736-845, - strand, RNAz p=0.870216

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-923, gnl|bosTau2|chr22 (41689368-41690271)
               

               
               1-923, gnl|Hg17|chr3 (11277247-11278240)
               

               
               1-923, gnl|Mm7|chr6 (114642275-114643123)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-923, gnl|bosTau2|chr22 (41689368-41690271)
               

               
               1-923, gnl|Hg17|chr3 (11277247-11278240)
               

               
               1-923, gnl|Mm7|chr6 (114642275-114643123)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               hlv (0.417769)
               

               
               nco (0.161734)
               

               
               lin (0.145603)
               

               
               ste (0.135208)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.417769)
               

               
               nco (0.161734)
               

               
               lin (0.145603)
               

               
               ste (0.135208)

	320-507, - strand, RNAz p=0.993616
	736-845, - strand, RNAz p=0.870216

	1-923, gnl\|bosTau2\|chr22 (41689368-41690271)
	1-923, gnl\|Hg17\|chr3 (11277247-11278240)
	1-923, gnl\|Mm7\|chr6 (114642275-114643123)