Ss1.1-Tra1-TCH01D070067.5
|
TACCGTGCCCTAGGCCCCACCACCCGGGAACACCACGGGCGGTCGATCTCAGGCTCCGCC
CACTCCGCCACGAGAACCCGCGCTGCTTGTTGAGCATCGGCCCCTCCCCCGAAGCCCGCC
GGTGGGGCTTGTCTCGTCCGTCGGCCTTAGGCCCGTGCCCAGGCCCGCCATGGAGGGGGA
TGTCCCCGTCGCCGCAGCAGCCCACTACCAGCCGGCCAGCCCCCCGCGGGACGCCTGCGT
CTACAACAGCTGCTACTGTGAAGAAAATATTTGGAAGCTCTGTGAATACATCAAAAACCA
CGACCAATATCCATTAGAAGAGTGTTACGCTGTCTTCATATCTAATGAGAGGAAGATGAT
TCCTATCTGGAAACAACAGGCAAGACCTGGAGATGGACCTGTGATCTGGGATTACCATGT
TGTCTTGCTTCATGTGTCGAGTGGAGGACAGAGCTTCATTTATGACCTTGACACTGTCCT
GCCATTTCCCTGCCCCTTTGATACGTATGTGGAAGATGCCTTTAAGTCTGATGAGGACAT
TCATCCGCAGTTTAGAAGGAAATTCCGAGTGATCCGTGCAGATTCGTATTTGAAGAACTT
TGCTTCTGACCGATCTCACATGAAGGATTCCAGCGGGAACTGGAGAGAACCTCCTCCGTC
CTATCCCTGCATCGAGACTGGAGATTCCAAAATGAACCTGAATGATTTTATCAGTATGGA
TCCTGAGGTGGGATGGGGAGCCGTCTACTCCCTGTCTGAATTTGTACATCGGTTTGGCAG
TCAGAACTACTAAACTTGACCTGTGGATGTAGTCCTGTGGAGAAATGCTAGGACCCGAAC
AGATCCACCCCTTCATCTGGGACAGCGAACATTATGGTACATTTGGTTTGGAATTATGTT
TTCCGTTTTATTTCAGTTGAGTTGAAACATAAGTGAACAAAGTAATAAATAGAACCAATT
TTTTTTTTTGATATGTCAGGTTGAAACTTGATGTAGTGTGTATTTGCTCAGTTATTCCTA
CAGCTCAGTTGTTAAAACATGTGAAGACTTAAGCCAATAATTGTTTTTGTTATGATAGAT
GTGTGGATTTCATGTCTGTTTTGGATGTTTCATTTCTCTCCAGCTACACTGTAAGCTCCT
TGAGGGCAGGGCTGTGGCCCATTTCTCTGTGAATCTCTAATGCCCATAACGTGTGCCATA
AAATGTTTGCTAGTGATTGTGCTCCTGCTTGAAGAGGGCTGACATAGTGAGCTGAATCAG
CAATAAGTATTAGTGTTTTGGACCATTATGTTCTTAAAAAAGATTGCAGCCCTCTCAGGC
TTAAGTGTTATTTGGCCTCTTTATATACGTTTTTAAATAAAACTGACTTAAAATTAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TACCGTGCCCTAGGCCCCACCACCCGGGAACACCACGGGCGGTCGATCTCAGGCTCCGCC
CACTCCGCCACGAGAACCCGCGCTGCTTGTTGAGCATCGGCCCCTCCCCCGAAGCCCGCC
GGTGGGGCTTGTCTCGTCCGTCGGCCTTAGGCCCGTGCCCAGGCCCGCCATGGAGGGGGA
TGTCCCCGTCGCCGCAGCAGCCCACTACCAGCCGGCCAGCCCCCCGCGGGACGCCTGCGT
CTACAACAGCTGCTACTGTGAAGAAAATATTTGGAAGCTCTGTGAATACATCAAAAACCA
CGACCAATATCCATTAGAAGAGTGTTACGCTGTCTTCATATCTAATGAGAGGAAGATGAT
TCCTATCTGGAAACAACAGGCAAGACCTGGAGATGGACCTGTGATCTGGGATTACCATGT
TGTCTTGCTTCATGTGTCGAGTGGAGGACAGAGCTTCATTTATGACCTTGACACTGTCCT
GCCATTTCCCTGCCCCTTTGATACGTATGTGGAAGATGCCTTTAAGTCTGATGAGGACAT
TCATCCGCAGTTTAGAAGGAAATTCCGAGTGATCCGTGCAGATTCGTATTTGAAGAACTT
TGCTTCTGACCGATCTCACATGAAGGATTCCAGCGGGAACTGGAGAGAACCTCCTCCGTC
CTATCCCTGCATCGAGACTGGAGATTCCAAAATGAACCTGAATGATTTTATCAGTATGGA
TCCTGAGGTGGGATGGGGAGCCGTCTACTCCCTGTCTGAATTTGTACATCGGTTTGGCAG
TCAGAACTACTAAACTTGACCTGTGGATGTAGTCCTGTGGAGAAATGCTAGGACCCGAAC
AGATCCACCCCTTCATCTGGGACAGCGAACATTATGGTACATTTGGTTTGGAATTATGTT
TTCCGTTTTATTTCAGTTGAGTTGAAACATAAGTGAACAAAGTAATAAATAGAACCAATT
TTTTTTTTTGATATGTCAGGTTGAAACTTGATGTAGTGTGTATTTGCTCAGTTATTCCTA
CAGCTCAGTTGTTAAAACATGTGAAGACTTAAGCCAATAATTGTTTTTGTTATGATAGAT
GTGTGGATTTCATGTCTGTTTTGGATGTTTCATTTCTCTCCAGCTACACTGTAAGCTCCT
TGAGGGCAGGGCTGTGGCCCATTTCTCTGTGAATCTCTAATGCCCATAACGTGTGCCATA
AAATGTTTGCTAGTGATTGTGCTCCTGCTTGAAGAGGGCTGACATAGTGAGCTGAATCAG
CAATAAGTATTAGTGTTTTGGACCATTATGTTCTTAAAAAAGATTGCAGCCCTCTCAGGC
TTAAGTGTTATTTGGCCTCTTTATATACGTTTTTAAATAAAACTGACTTAAAATTAAAAA
AAAAAAAAAAAA
|
|
gi|7022103|dbj|BAA91488.1| |
Protein identifier
|
gi|7022103|dbj|BAA91488.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
2-258, gnl|bosTau2|chr14 (7767883-7767631) |
|
2-258, gnl|Mm7|chr15 (58206699-58206917) |
| |
|
405-559, gnl|bosTau2|chr14 (7757378-7757224) |
|
405-559, gnl|canFam2|chr13 (24789267-24789370) |
|
405-559, gnl|danRer3|chr19 (67681536-67681639) |
|
405-559, gnl|echTel1|scaffold_251322 (4620-4527) |
|
405-559, gnl|fr1|chrUn (39601829-39601927) |
|
405-559, gnl|hg17|chr8 (124517863-124517966) |
|
405-559, gnl|Hg17|chr8 (124517869-124518023) |
|
405-559, gnl|loxAfr1|scaffold_34805 (3852-3955) |
|
405-559, gnl|mm7|chr15 (58217922-58218025) |
|
405-559, gnl|Mm7|chr15 (58217928-58218082) |
|
405-559, gnl|monDom2|scaffold_3 (31322917-31322814) |
|
405-559, gnl|oryCun1|scaffold_204139 (41030-41132) |
|
405-559, gnl|panTro1|chr7 (127240256-127240359) |
|
405-559, gnl|rheMac2|chr8 (126019799-126019902) |
|
405-559, gnl|rn3|chr7 (94909067-94909170) |
| |
|
682-1377, gnl|bosTau2|chr14 (7750277-7749605) |
|
682-1377, gnl|Hg17|chr8 (124522725-124523443) |
|
682-1377, gnl|Mm7|chr15 (58223236-58223990) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-258, gnl|bosTau2|chr14 (7767883-7767631) |
|
2-258, gnl|Mm7|chr15 (58206699-58206917) |
| |
|
405-559, gnl|bosTau2|chr14 (7757378-7757224) |
|
405-559, gnl|canFam2|chr13 (24789267-24789370) |
|
405-559, gnl|danRer3|chr19 (67681536-67681639) |
|
405-559, gnl|echTel1|scaffold_251322 (4620-4527) |
|
405-559, gnl|fr1|chrUn (39601829-39601927) |
|
405-559, gnl|hg17|chr8 (124517863-124517966) |
|
405-559, gnl|Hg17|chr8 (124517869-124518023) |
|
405-559, gnl|loxAfr1|scaffold_34805 (3852-3955) |
|
405-559, gnl|mm7|chr15 (58217922-58218025) |
|
405-559, gnl|Mm7|chr15 (58217928-58218082) |
|
405-559, gnl|monDom2|scaffold_3 (31322917-31322814) |
|
405-559, gnl|oryCun1|scaffold_204139 (41030-41132) |
|
405-559, gnl|panTro1|chr7 (127240256-127240359) |
|
405-559, gnl|rheMac2|chr8 (126019799-126019902) |
|
405-559, gnl|rn3|chr7 (94909067-94909170) |
| |
|
682-1377, gnl|bosTau2|chr14 (7750277-7749605) |
|
682-1377, gnl|Hg17|chr8 (124522725-124523443) |
|
682-1377, gnl|Mm7|chr15 (58223236-58223990) |
|
fbs (0.350693) |
|
cag (0.302389) |
|
cte (0.29274) |
|
bla (0.248694) |
|
eru (0.240096) |
|
ece (0.229305) |
|
nms (0.213858) |
|
fcc (0.197785) |
|
duo (0.172801) |
|
eye (0.170503) |
|
fco (0.157208) |
|
ski (0.146735) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
pla (0.133672) |
|
ova (0.129132) |
|
thg (0.126791) |
|
cly (0.120642) |
|
pgl (0.118483) |
|
ecc (0.115035) |
|
spc (0.113366) |
|
eje (0.0988338) |
|
fbs (0.350693) |
|
cag (0.302389) |
|
cte (0.29274) |
|
bla (0.248694) |
|
eru (0.240096) |
|
ece (0.229305) |
|
nms (0.213858) |
|
fcc (0.197785) |
|
duo (0.172801) |
|
eye (0.170503) |
|
fco (0.157208) |
|
ski (0.146735) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
pla (0.133672) |
|
ova (0.129132) |
|
thg (0.126791) |
|
cly (0.120642) |
|
pgl (0.118483) |
|
ecc (0.115035) |
|
spc (0.113366) |
|
eje (0.0988338) |
