Non-Coding RNA Search

Ss1.1-Tra1-TCH01D080006.5

Sequence:


               
               TTCCACCCGCCGCGAGCATGGTGGCGCTGAAGGGCATCCCCGCGCTGCTGTCCCCGGAGC
TGCTCTACGCCCTGGCGCGAATGGGGCACGGAGATGAGATCGTCCTTGCAGATGTGAACT
TCCCCACGTCCTCCGTCTGCAAGTGTGGCCCGGAGGAGATCCGCGCTGACGGCCTGGGCA
TCCCTCAGCTGCTGGAGGCCGTGCTGACACTGCTACCACTGGACACGTACGTGGAGAGCC
CGGCTGCGGTCATGGAGCTGGTGCCCAGTGACAGGGAGAGGGGCCTGCAGACCCCAGTGT
GGACAAGCTACCAGTCCATCCTGCTCCAGGCTGGCTGCACGAGCTCCCTGACGGCGATAG
AGAGGTTTGAGTTTTACGAAAGGGCCAAAAAGGCTTTTGCTGTTGTGGCAACTGGGGAGA
CGGCCCTCTACGGAAACCTCATCCTCAAGAAGGGGGTGCTGGCGCCCGGCGCCCTGTCCC
AGGCCTGTTGACCGTCTGCCCGGAGAGGAGTCTGGACCCTGGGCCTGACAGCACCACCAG
CAGGCAGGTCCAGCGTCCAGATGAACCGGCCTTGCTCTGCCTGTCAGCACGGGAACCTCA
CCCAGCCAGGGGCTCCGGGGCCAGTGGGTTTGCTGACTGGGCTGGGGTTGTCCCAGTTTA
TGAAAACAAGGGACGAGCACAGTGACTTGCCAGCGTTCAGTCCAAAGGTTTCAACAGCAG
CTCACCCTAACTCCCCAAGGCCTGTGGGGGCGGGTGACGGAGGCCACTCCGGCCCCCACA
GAGAGGGCCCCACCCACTCTGCACGGATCCCGCCTGCCGCAAGCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCACCCGCCGCGAGCATGGTGGCGCTGAAGGGCATCCCCGCGCTGCTGTCCCCGGAGC
TGCTCTACGCCCTGGCGCGAATGGGGCACGGAGATGAGATCGTCCTTGCAGATGTGAACT
TCCCCACGTCCTCCGTCTGCAAGTGTGGCCCGGAGGAGATCCGCGCTGACGGCCTGGGCA
TCCCTCAGCTGCTGGAGGCCGTGCTGACACTGCTACCACTGGACACGTACGTGGAGAGCC
CGGCTGCGGTCATGGAGCTGGTGCCCAGTGACAGGGAGAGGGGCCTGCAGACCCCAGTGT
GGACAAGCTACCAGTCCATCCTGCTCCAGGCTGGCTGCACGAGCTCCCTGACGGCGATAG
AGAGGTTTGAGTTTTACGAAAGGGCCAAAAAGGCTTTTGCTGTTGTGGCAACTGGGGAGA
CGGCCCTCTACGGAAACCTCATCCTCAAGAAGGGGGTGCTGGCGCCCGGCGCCCTGTCCC
AGGCCTGTTGACCGTCTGCCCGGAGAGGAGTCTGGACCCTGGGCCTGACAGCACCACCAG
CAGGCAGGTCCAGCGTCCAGATGAACCGGCCTTGCTCTGCCTGTCAGCACGGGAACCTCA
CCCAGCCAGGGGCTCCGGGGCCAGTGGGTTTGCTGACTGGGCTGGGGTTGTCCCAGTTTA
TGAAAACAAGGGACGAGCACAGTGACTTGCCAGCGTTCAGTCCAAAGGTTTCAACAGCAG
CTCACCCTAACTCCCCAAGGCCTGTGGGGGCGGGTGACGGAGGCCACTCCGGCCCCCACA
GAGAGGGCCCCACCCACTCTGCACGGATCCCGCCTGCCGCAAGCTCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38348262|ref|NP_940874.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38348262|ref|NP_940874.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               415-800, gnl|bosTau2|chr26 (34967016-34967411)
               

               
               415-800, gnl|Hg17|chr10 (135057822-135057461)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               415-800, gnl|bosTau2|chr26 (34967016-34967411)
               

               
               415-800, gnl|Hg17|chr10 (135057822-135057461)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ill (0.175593)
               

               
               nje (0.16592)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               nmm (0.132802)

	415-800, gnl\|bosTau2\|chr26 (34967016-34967411)
	415-800, gnl\|Hg17\|chr10 (135057822-135057461)