Ss1.1-Tra1-TCH01D080039.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGCAGTTGCGCGGCTCAGACCAGGTCCGGAGGGTTCGTGGGTCGCTCTAGCTATCTCT ATTAGCTGTCTCCGCAAAGCAGGGCGTGCGCGGCGGTGATGAGCTGGGAGCTGTTTCTCT GGCTGCTGGCACTATGCGTGCTGCTCGCGCTCGTGGTGCAGCTCCTGCGCTTCCTGCGGG CAGATGGCGACCTGACCCTGCTGTGGGCCGAGTGGCAGGGGCGACGCCCAGAATGGGAGC TGACTGATATGGTGGTGTGGGTGACTGGAGCATCCAGTGGGATTGGCGAGGAGCTGGTTT ACCAGCTCTCTAAACTAGGAGTTTCTCTCGTGCTGTCAGCCAGAAGAGTGCAGGAGCTGG AAAGGGTGAAAAGAAGATGCCTTGAGAATGGCATTTTGAAAGGAAAAGATATACTAATTT TGCCCCTTGACCTGGCTAATAGAAGTTCGCATGAAGTGGCTACTAAAGCTGTTCTCCAGG AGTTTGGTAAAATCGACATTCTGGTCAACAATGGTGGAGTATCCCAGCGTTCTTTGTGTG TGGACACCAGCCTGGATGTCTACAAGGAGCTAATGGAAGTTAACTACTTAGGGACGGTGT CCTTGACAAAGTGTGTTCTGCCTCACATGATTGAGAAGAAGCAAGGAAAAATCATTACTG TGAATAGCTTCATGGGTATTATAGCTGCACCCCTTTCTGGTGGATATTGTGCCAGCAAAC ATGCTCTTCGGGGTTTTTTTAATACCCTCCGAACTGAACTTGCCACATACCCAGGTATAA CAGTTTCTAATGTTTGCCCAGGACCTGTAAAATCAAATATTGTGAAGAATGCCCTAACTG AAGAAGTCACAAAGACTCTAGGCAGTGATGCAGACCAATCCCACAAGATGGCAACCAGCC GCTGTGCACGGCTGATGTTAATTGCCATGGCCAATGATTTGAAAGAAGTTTGGATTGCGG AGCAGCCTTTTTTGTCAATGGCATATTTATGGCAATATATACCAACCTGGGCCTGGTGGC TGACCAGCAAAATAGGGAAGAAAAGGATTGAGAACTTTAAGAGTGGTGTGGATGCAGATT CCTCTTATTTTAAGATCTGGAAGAAAAAACATGACTGAAGGAGTATTTGCATTTTTCAAG CTACTGAACAAAGAAATGGAAAACATGAAAACAGTGATCTTTTAATGCACTGAAGACTAA CTTGTGATTTTACTTCTTAACAGATACAACTTTGCTTTCAACATGTAATAAGTAACAAAA GACCATCAGAGCCTTGCAATAAAGATATTAATACAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGCAGTTGCGCGGCTCAGACCAGGTCCGGAGGGTTCGTGGGTCGCTCTAGCTATCTCT ATTAGCTGTCTCCGCAAAGCAGGGCGTGCGCGGCGGTGATGAGCTGGGAGCTGTTTCTCT GGCTGCTGGCACTATGCGTGCTGCTCGCGCTCGTGGTGCAGCTCCTGCGCTTCCTGCGGG CAGATGGCGACCTGACCCTGCTGTGGGCCGAGTGGCAGGGGCGACGCCCAGAATGGGAGC TGACTGATATGGTGGTGTGGGTGACTGGAGCATCCAGTGGGATTGGCGAGGAGCTGGTTT ACCAGCTCTCTAAACTAGGAGTTTCTCTCGTGCTGTCAGCCAGAAGAGTGCAGGAGCTGG AAAGGGTGAAAAGAAGATGCCTTGAGAATGGCATTTTGAAAGGAAAAGATATACTAATTT TGCCCCTTGACCTGGCTAATAGAAGTTCGCATGAAGTGGCTACTAAAGCTGTTCTCCAGG AGTTTGGTAAAATCGACATTCTGGTCAACAATGGTGGAGTATCCCAGCGTTCTTTGTGTG TGGACACCAGCCTGGATGTCTACAAGGAGCTAATGGAAGTTAACTACTTAGGGACGGTGT CCTTGACAAAGTGTGTTCTGCCTCACATGATTGAGAAGAAGCAAGGAAAAATCATTACTG TGAATAGCTTCATGGGTATTATAGCTGCACCCCTTTCTGGTGGATATTGTGCCAGCAAAC ATGCTCTTCGGGGTTTTTTTAATACCCTCCGAACTGAACTTGCCACATACCCAGGTATAA CAGTTTCTAATGTTTGCCCAGGACCTGTAAAATCAAATATTGTGAAGAATGCCCTAACTG AAGAAGTCACAAAGACTCTAGGCAGTGATGCAGACCAATCCCACAAGATGGCAACCAGCC GCTGTGCACGGCTGATGTTAATTGCCATGGCCAATGATTTGAAAGAAGTTTGGATTGCGG AGCAGCCTTTTTTGTCAATGGCATATTTATGGCAATATATACCAACCTGGGCCTGGTGGC TGACCAGCAAAATAGGGAAGAAAAGGATTGAGAACTTTAAGAGTGGTGTGGATGCAGATT CCTCTTATTTTAAGATCTGGAAGAAAAAACATGACTGAAGGAGTATTTGCATTTTTCAAG CTACTGAACAAAGAAATGGAAAACATGAAAACAGTGATCTTTTAATGCACTGAAGACTAA CTTGTGATTTTACTTCTTAACAGATACAACTTTGCTTTCAACATGTAATAAGTAACAAAA GACCATCAGAGCCTTGCAATAAAGATATTAATACAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 230-349, - strand, RNAz p=0.736013 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 230-349, - strand, RNAz p=0.736013 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 230-384, gnl|bosTau2|chr10 (48994197-48994043) | |
| 230-384, gnl|Hg17|chr14 (59692625-59692471) | |
| 230-384, gnl|Mm7|chr12 (70610042-70609888) | |
| 483-732, gnl|bosTau2|chr10 (48991573-48991324) | |
| 483-732, gnl|canFam2|chr8 (38289350-38289631) | |
| 483-732, gnl|danRer3|chr13 (32589742-32590021) | |
| 483-732, gnl|dasNov1|scaffold_16795 (18811-18531) | |
| 483-732, gnl|echTel1|scaffold_287264 (1245-964) | |
| 483-732, gnl|fr1|chrUn (275286038-275286285) | |
| 483-732, gnl|galGal2|chr5 (51313875-51313616) | |
| 483-732, gnl|hg17|chr14 (59689405-59689685) | |
| 483-732, gnl|Hg17|chr14 (59689658-59689409) | |
| 483-732, gnl|loxAfr1|scaffold_21630 (36068-36348) | |
| 483-732, gnl|mm7|chr12 (70606839-70607112) | |
| 483-732, gnl|Mm7|chr12 (70607088-70606843) | |
| 483-732, gnl|monDom2|scaffold_8 (72605443-72605712) | |
| 483-732, gnl|oryCun1|scaffold_211354 (30534-30813) | |
| 483-732, gnl|rheMac2|chr7 (123169958-123170238) | |
| 483-732, gnl|rn3|chr6 (95060972-95061245) | |
| 483-732, gnl|tetNig1|chr10 (5556179-5556444) | |
| 483-732, gnl|xenTro1|scaffold_33 (424660-424382) | |
| 1037-1296, gnl|bosTau2|chr10 (48982839-48982581) | |
| 1037-1296, gnl|canFam2|chr8 (38281724-38281928) | |
| 1037-1296, gnl|dasNov1|scaffold_171547 (4484-4287) | |
| 1037-1296, gnl|echTel1|scaffold_287264 (7247-7059) | |
| 1037-1296, gnl|hg17|chr14 (59681217-59681447) | |
| 1037-1296, gnl|Hg17|chr14 (59681528-59681236) | |
| 1037-1296, gnl|loxAfr1|scaffold_21630 (27667-27965) | |
| 1037-1296, gnl|Mm7|chr12 (70601216-70600930) | |
| 1037-1296, gnl|oryCun1|scaffold_211354 (25209-25408) | |
| 1037-1296, gnl|panTro1|chr15 (59253919-59254149) | |
| 1037-1296, gnl|rheMac2|chr7 (123162187-123162412) | |
| 1037-1296, gnl|rn3|chr6 (95053239-95053451) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 230-384, gnl|bosTau2|chr10 (48994197-48994043) | |
| 230-384, gnl|Hg17|chr14 (59692625-59692471) | |
| 230-384, gnl|Mm7|chr12 (70610042-70609888) | |
| 483-732, gnl|bosTau2|chr10 (48991573-48991324) | |
| 483-732, gnl|canFam2|chr8 (38289350-38289631) | |
| 483-732, gnl|danRer3|chr13 (32589742-32590021) | |
| 483-732, gnl|dasNov1|scaffold_16795 (18811-18531) | |
| 483-732, gnl|echTel1|scaffold_287264 (1245-964) | |
| 483-732, gnl|fr1|chrUn (275286038-275286285) | |
| 483-732, gnl|galGal2|chr5 (51313875-51313616) | |
| 483-732, gnl|hg17|chr14 (59689405-59689685) | |
| 483-732, gnl|Hg17|chr14 (59689658-59689409) | |
| 483-732, gnl|loxAfr1|scaffold_21630 (36068-36348) | |
| 483-732, gnl|mm7|chr12 (70606839-70607112) | |
| 483-732, gnl|Mm7|chr12 (70607088-70606843) | |
| 483-732, gnl|monDom2|scaffold_8 (72605443-72605712) | |
| 483-732, gnl|oryCun1|scaffold_211354 (30534-30813) | |
| 483-732, gnl|rheMac2|chr7 (123169958-123170238) | |
| 483-732, gnl|rn3|chr6 (95060972-95061245) | |
| 483-732, gnl|tetNig1|chr10 (5556179-5556444) | |
| 483-732, gnl|xenTro1|scaffold_33 (424660-424382) | |
| 1037-1296, gnl|bosTau2|chr10 (48982839-48982581) | |
| 1037-1296, gnl|canFam2|chr8 (38281724-38281928) | |
| 1037-1296, gnl|dasNov1|scaffold_171547 (4484-4287) | |
| 1037-1296, gnl|echTel1|scaffold_287264 (7247-7059) | |
| 1037-1296, gnl|hg17|chr14 (59681217-59681447) | |
| 1037-1296, gnl|Hg17|chr14 (59681528-59681236) | |
| 1037-1296, gnl|loxAfr1|scaffold_21630 (27667-27965) | |
| 1037-1296, gnl|Mm7|chr12 (70601216-70600930) | |
| 1037-1296, gnl|oryCun1|scaffold_211354 (25209-25408) | |
| 1037-1296, gnl|panTro1|chr15 (59253919-59254149) | |
| 1037-1296, gnl|rheMac2|chr7 (123162187-123162412) | |
| 1037-1296, gnl|rn3|chr6 (95053239-95053451) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| mga (0.801025) | |
| kid (0.778412) | |
| spc (0.566829) | |
| lyg (0.532411) | |
| ski (0.440205) | |
| ssp (0.406559) | |
| sto (0.359648) | |
| vin (0.332557) | |
| isp (0.300752) | |
| fat (0.294855) | |
| cte (0.29274) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| cki (0.165235) | |
| fco (0.157208) | |
| cag (0.151194) | |
| csk (0.140746) | |
| cov (0.132153) | |
| ova (0.129132) | |
| ret (0.128733) | |
| bla (0.124347) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mga (0.801025) | |
| kid (0.778412) | |
| spc (0.566829) | |
| lyg (0.532411) | |
| ski (0.440205) | |
| ssp (0.406559) | |
| sto (0.359648) | |
| vin (0.332557) | |
| isp (0.300752) | |
| fat (0.294855) | |
| cte (0.29274) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| cki (0.165235) | |
| fco (0.157208) | |
| cag (0.151194) | |
| csk (0.140746) | |
| cov (0.132153) | |
| ova (0.129132) | |
| ret (0.128733) | |
| bla (0.124347) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cty (0.10408) |