Ss1.1-Tra1-TCH01D080043.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTGGCGGAGAAGAGTCTTTATTGTGCAGGCCAGTCCAGG CCCAGCCTACAGCAGGTCGTAGAAGTAGTCCAGGCCCTGGCCCAGCTCCCAGATGGACAG CCCGACGCCCAACTCCCTGGCCAGCTCAAGCCGCACCTGCAAGGACTTCAGCGTCGGGTA GAAGACGATGTGCCTCCCACCGCGGTTCTTCTTGTACTCGAAGACGTGCTCTGCGGCTTG GCTGTCCCACGTGATCCGGGGCCTGTGGTCCTTCAGCGTCTGGATGTACCTGGCCCCAAT GATGGGCTCGCGGGCATCCTTGGAGGCTGCGTAGTCCATGCCGTAGAAGTTGAGCCCCAG CAGGATCTTGCTCCGCCACCGGGACTTGGGGTCCAGGACCTGGACACAGGCCCGCACCCA GGACAGCGGTGCGTTGGGGCCAGGCTGCTGCGCCGTGGAGTAGTCGTAGGTCATGAGGCT GAAGCCGTCCAGCAGGGGCGCCAGCTGCTCAAACTCCTTGTGCGTGAACACGCCCAGCTT GTTGGTCCCGGGGGCGACGGCGGGGGGGATGACCAGGATGGCCAGCAGCCGGGCCTGGTG CAGCGCCTCGACCACGTGGGTGAGCATGTGAATGAGGCCCACGTGCTTCTGGATCAGCAG CTGGTTCCAGACCTCCACCACGAAGCCGTCGAAGCGCTGGCTCTTGGCCACCTGGACCAC AGTCCTGCTCAGCTCCTCTATCTCGTCCTCACTGTCCAGGACGTTCCGGAAGTCCTCGTA CGTCCAGTCCTCAAACCGGAGCCGGGGCACTATGCGGAGGCCCTTGGTCTGCTTCCTGAC TGCTCGCATCCACCCTTGGTCCACGTCGTCGAGGCCTGTGACCTCGAACATCTCGCGGCC ATGCCGCCTCAGCTGCAGCCACACGGGCGCCACGTGGGTGAACTTGCCCGCAAAGATCTT GGCGATGTCGTAGCCGTGGCTGTTCCATGGAGTGACGTAGCCCAGGACGTCCCCGGCAAA GTGTTTCCTGAGGGCCTTCGCGGAGCAGTAGCTGCGATGCTCAAGAACCACGTCCTCGGC TCTGAGGTCTGTCACCACCAGACCCCGCTCCTGGACGGGCACGCCCGCAACCTGAGTCTT CTCCGGCAGTGTCTTGGAGGCAGCCTTTTTGGCATCGGACTTCGACAGGGTGCCGTGAGC AGAGCCGCAAGCCAGAGCGAGCCAGAGCGCGCCGAGGAGGCTTCGCATGGTGCGGGCCTG TCACGGCAGGGTCCAAGCTCGGGGTCCGGGGGGCTTCATGTCCCGGAGGCCGACCGGAAC AAACTCGCGCGGGCCGGAAGACGCCTCACGGCCGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTGGCGGAGAAGAGTCTTTATTGTGCAGGCCAGTCCAGG CCCAGCCTACAGCAGGTCGTAGAAGTAGTCCAGGCCCTGGCCCAGCTCCCAGATGGACAG CCCGACGCCCAACTCCCTGGCCAGCTCAAGCCGCACCTGCAAGGACTTCAGCGTCGGGTA GAAGACGATGTGCCTCCCACCGCGGTTCTTCTTGTACTCGAAGACGTGCTCTGCGGCTTG GCTGTCCCACGTGATCCGGGGCCTGTGGTCCTTCAGCGTCTGGATGTACCTGGCCCCAAT GATGGGCTCGCGGGCATCCTTGGAGGCTGCGTAGTCCATGCCGTAGAAGTTGAGCCCCAG CAGGATCTTGCTCCGCCACCGGGACTTGGGGTCCAGGACCTGGACACAGGCCCGCACCCA GGACAGCGGTGCGTTGGGGCCAGGCTGCTGCGCCGTGGAGTAGTCGTAGGTCATGAGGCT GAAGCCGTCCAGCAGGGGCGCCAGCTGCTCAAACTCCTTGTGCGTGAACACGCCCAGCTT GTTGGTCCCGGGGGCGACGGCGGGGGGGATGACCAGGATGGCCAGCAGCCGGGCCTGGTG CAGCGCCTCGACCACGTGGGTGAGCATGTGAATGAGGCCCACGTGCTTCTGGATCAGCAG CTGGTTCCAGACCTCCACCACGAAGCCGTCGAAGCGCTGGCTCTTGGCCACCTGGACCAC AGTCCTGCTCAGCTCCTCTATCTCGTCCTCACTGTCCAGGACGTTCCGGAAGTCCTCGTA CGTCCAGTCCTCAAACCGGAGCCGGGGCACTATGCGGAGGCCCTTGGTCTGCTTCCTGAC TGCTCGCATCCACCCTTGGTCCACGTCGTCGAGGCCTGTGACCTCGAACATCTCGCGGCC ATGCCGCCTCAGCTGCAGCCACACGGGCGCCACGTGGGTGAACTTGCCCGCAAAGATCTT GGCGATGTCGTAGCCGTGGCTGTTCCATGGAGTGACGTAGCCCAGGACGTCCCCGGCAAA GTGTTTCCTGAGGGCCTTCGCGGAGCAGTAGCTGCGATGCTCAAGAACCACGTCCTCGGC TCTGAGGTCTGTCACCACCAGACCCCGCTCCTGGACGGGCACGCCCGCAACCTGAGTCTT CTCCGGCAGTGTCTTGGAGGCAGCCTTTTTGGCATCGGACTTCGACAGGGTGCCGTGAGC AGAGCCGCAAGCCAGAGCGAGCCAGAGCGCGCCGAGGAGGCTTCGCATGGTGCGGGCCTG TCACGGCAGGGTCCAAGCTCGGGGTCCGGGGGGCTTCATGTCCCGGAGGCCGACCGGAAC AAACTCGCGCGGGCCGGAAGACGCCTCACGGCCGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 989-1095, - strand, RNAz p=0.871525 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 989-1095, - strand, RNAz p=0.871525 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 57-167, gnl|bosTau2|chr18 (54551182-54551072) | |
| 57-167, gnl|canFam2|chr18 (48266794-48266930) | |
| 57-167, gnl|dasNov1|scaffold_243814 (468-592) | |
| 57-167, gnl|echTel1|scaffold_92427 (692-538) | |
| 57-167, gnl|hg17|chr11 (859803-859947) | |
| 57-167, gnl|Hg17|chr11 (859848-859958) | |
| 57-167, gnl|mm7|chr7 (137913261-137913401) | |
| 57-167, gnl|Mm7|chr7 (137913303-137913412) | |
| 57-167, gnl|monDom2|scaffold_363 (54600-54739) | |
| 57-167, gnl|panTro1|chr9 (936885-937029) | |
| 57-167, gnl|rheMac2|chr14 (681378-681522) | |
| 57-167, gnl|rn3|chr1 (201837190-201837330) | |
| 57-167, gnl|tetNig1|chr13 (10815119-10815009) | |
| 288-464, gnl|bosTau2|chr18 (54545860-54545683) | |
| 288-464, gnl|Hg17|chr11 (873146-873323) | |
| 288-464, gnl|Mm7|chr7 (137930996-137931173) | |
| 703-811, gnl|bosTau2|chr18 (54539181-54539073) | |
| 703-811, gnl|canFam2|chr18 (48284000-48284110) | |
| 703-811, gnl|hg17|chr11 (890003-890113) | |
| 703-811, gnl|Hg17|chr11 (890004-890112) | |
| 703-811, gnl|mm7|chr7 (137944862-137944972) | |
| 703-811, gnl|Mm7|chr7 (137944863-137944971) | |
| 703-811, gnl|panTro1|chr9 (968097-968207) | |
| 703-811, gnl|rheMac2|chr14 (711439-711549) | |
| 703-811, gnl|rn3|chr1 (201860365-201860475) | |
| 703-811, gnl|tetNig1|chr13 (10813820-10813710) | |
| 854-987, gnl|bosTau2|chr18 (54537737-54537604) | |
| 854-987, gnl|canFam2|chr18 (48285330-48285500) | |
| 854-987, gnl|echTel1|scaffold_135767 (87-255) | |
| 854-987, gnl|hg17|chr11 (892169-892340) | |
| 854-987, gnl|Hg17|chr11 (892197-892330) | |
| 854-987, gnl|mm7|chr7 (137946804-137946975) | |
| 854-987, gnl|Mm7|chr7 (137946832-137946965) | |
| 854-987, gnl|panTro1|chr9 (970258-970429) | |
| 854-987, gnl|rheMac2|chr14 (713556-713727) | |
| 854-987, gnl|rn3|chr1 (201862526-201862697) | |
| 854-987, gnl|tetNig1|chr13 (10813530-10813387) | |
| 989-1139, gnl|bosTau2|chr18 (54537350-54537200) | |
| 989-1139, gnl|canFam2|chr18 (48285737-48285911) | |
| 989-1139, gnl|echTel1|scaffold_135767 (426-602) | |
| 989-1139, gnl|hg17|chr11 (892951-893127) | |
| 989-1139, gnl|Hg17|chr11 (892963-893113) | |
| 989-1139, gnl|mm7|chr7 (137947403-137947578) | |
| 989-1139, gnl|Mm7|chr7 (137947415-137947565) | |
| 989-1139, gnl|panTro1|chr9 (971245-971421) | |
| 989-1139, gnl|rheMac2|chr14 (714343-714519) | |
| 989-1139, gnl|rn3|chr1 (201863129-201863305) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 57-167, gnl|bosTau2|chr18 (54551182-54551072) | |
| 57-167, gnl|canFam2|chr18 (48266794-48266930) | |
| 57-167, gnl|dasNov1|scaffold_243814 (468-592) | |
| 57-167, gnl|echTel1|scaffold_92427 (692-538) | |
| 57-167, gnl|hg17|chr11 (859803-859947) | |
| 57-167, gnl|Hg17|chr11 (859848-859958) | |
| 57-167, gnl|mm7|chr7 (137913261-137913401) | |
| 57-167, gnl|Mm7|chr7 (137913303-137913412) | |
| 57-167, gnl|monDom2|scaffold_363 (54600-54739) | |
| 57-167, gnl|panTro1|chr9 (936885-937029) | |
| 57-167, gnl|rheMac2|chr14 (681378-681522) | |
| 57-167, gnl|rn3|chr1 (201837190-201837330) | |
| 57-167, gnl|tetNig1|chr13 (10815119-10815009) | |
| 288-464, gnl|bosTau2|chr18 (54545860-54545683) | |
| 288-464, gnl|Hg17|chr11 (873146-873323) | |
| 288-464, gnl|Mm7|chr7 (137930996-137931173) | |
| 703-811, gnl|bosTau2|chr18 (54539181-54539073) | |
| 703-811, gnl|canFam2|chr18 (48284000-48284110) | |
| 703-811, gnl|hg17|chr11 (890003-890113) | |
| 703-811, gnl|Hg17|chr11 (890004-890112) | |
| 703-811, gnl|mm7|chr7 (137944862-137944972) | |
| 703-811, gnl|Mm7|chr7 (137944863-137944971) | |
| 703-811, gnl|panTro1|chr9 (968097-968207) | |
| 703-811, gnl|rheMac2|chr14 (711439-711549) | |
| 703-811, gnl|rn3|chr1 (201860365-201860475) | |
| 703-811, gnl|tetNig1|chr13 (10813820-10813710) | |
| 854-987, gnl|bosTau2|chr18 (54537737-54537604) | |
| 854-987, gnl|canFam2|chr18 (48285330-48285500) | |
| 854-987, gnl|echTel1|scaffold_135767 (87-255) | |
| 854-987, gnl|hg17|chr11 (892169-892340) | |
| 854-987, gnl|Hg17|chr11 (892197-892330) | |
| 854-987, gnl|mm7|chr7 (137946804-137946975) | |
| 854-987, gnl|Mm7|chr7 (137946832-137946965) | |
| 854-987, gnl|panTro1|chr9 (970258-970429) | |
| 854-987, gnl|rheMac2|chr14 (713556-713727) | |
| 854-987, gnl|rn3|chr1 (201862526-201862697) | |
| 854-987, gnl|tetNig1|chr13 (10813530-10813387) | |
| 989-1139, gnl|bosTau2|chr18 (54537350-54537200) | |
| 989-1139, gnl|canFam2|chr18 (48285737-48285911) | |
| 989-1139, gnl|echTel1|scaffold_135767 (426-602) | |
| 989-1139, gnl|hg17|chr11 (892951-893127) | |
| 989-1139, gnl|Hg17|chr11 (892963-893113) | |
| 989-1139, gnl|mm7|chr7 (137947403-137947578) | |
| 989-1139, gnl|Mm7|chr7 (137947415-137947565) | |
| 989-1139, gnl|panTro1|chr9 (971245-971421) | |
| 989-1139, gnl|rheMac2|chr14 (714343-714519) | |
| 989-1139, gnl|rn3|chr1 (201863129-201863305) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| pty (0.570858) | |
| cov (0.528611) | |
| nep (0.36785) | |
| mcp (0.341297) | |
| cty (0.31224) | |
| eje (0.296501) | |
| ute (0.265569) | |
| ece (0.229305) | |
| nms (0.213858) | |
| col (0.195008) | |
| csp (0.161186) | |
| eli (0.151814) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.570858) | |
| cov (0.528611) | |
| nep (0.36785) | |
| mcp (0.341297) | |
| cty (0.31224) | |
| eje (0.296501) | |
| ute (0.265569) | |
| ece (0.229305) | |
| nms (0.213858) | |
| col (0.195008) | |
| csp (0.161186) | |
| eli (0.151814) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) |