Ss1.1-Tra1-TCH01D080050.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGCACAGCAGCCGGAGGAAGCACAGACGGCGGAGGCGGCGCAGCCGGACATTCAGCCG CTCATCTTCGCAGCACAGCAGCCGGAGAGCCAAGAGTGTAGAGGACGACGCTGAGGGCCA CCTCATCTACCACGTCGGGGACTGGCTACAAGAGCGATATGAAATCATAAGCACCTTGGG AGAGGGGACCTTCGGCCGAGTTGTGCAGTGTGTCGACCATCGCAGGGGTGGGGCCCGAGT TGCCCTGAAGATCATTAAAAATGTGGAAAAGTACAAGGAAGCAGCTCGACTTGAGATCAA TGTGCTGGAGAAAATCAACGAGAAGGATCCTGACAACAAGAACCTCTGTGTCCAGATGTT TGACTGGTTTGACTACCATGGCCACATGTGTATCTCCTTTGAGCTTCTGGGCCTTAGCAC CTTCGATTTCCTCAAAGACAACAACTACCTGCCCTACCCCATCCACCAAGTGCGCCACAT GGCCTTCCAGCTGTGCCAGGCCGTCAAGTTCCTCCATGATAACAAGCTGACACATACGGA CCTCAAGCCTGAAAACATTCTGTTTGTGAATTCAGACTACGAGCTCACCTACAACCTAGA GAAGAAGCGAGATGAGCGAAGCGTGAAGAGCACAGCTGTGCGGGTGGTAGACTTTGGCAG TGCCACCTTTGACCATGAACACCATAGCACCATCGTCTCTACCCGCCACTACCGAGCACC AGAGGTTATCCTCGAGTTGGGCTGGTCACAGCCTTGTGATGTGTGGAGCATAGGCTGCAT GAGCCACCTAACGCCAAGTTGTGGGACTCCAGTCGGGATATCAGTCGGTGACGATCAGGC CCTGGGCCCCCCTGCGTTTCTGACAGCAGTGGGTGTCCAGTCCAGGAGAGTAGTAATGAG TAAGGTAAGATTTCTTGGTTAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGCACAGCAGCCGGAGGAAGCACAGACGGCGGAGGCGGCGCAGCCGGACATTCAGCCG CTCATCTTCGCAGCACAGCAGCCGGAGAGCCAAGAGTGTAGAGGACGACGCTGAGGGCCA CCTCATCTACCACGTCGGGGACTGGCTACAAGAGCGATATGAAATCATAAGCACCTTGGG AGAGGGGACCTTCGGCCGAGTTGTGCAGTGTGTCGACCATCGCAGGGGTGGGGCCCGAGT TGCCCTGAAGATCATTAAAAATGTGGAAAAGTACAAGGAAGCAGCTCGACTTGAGATCAA TGTGCTGGAGAAAATCAACGAGAAGGATCCTGACAACAAGAACCTCTGTGTCCAGATGTT TGACTGGTTTGACTACCATGGCCACATGTGTATCTCCTTTGAGCTTCTGGGCCTTAGCAC CTTCGATTTCCTCAAAGACAACAACTACCTGCCCTACCCCATCCACCAAGTGCGCCACAT GGCCTTCCAGCTGTGCCAGGCCGTCAAGTTCCTCCATGATAACAAGCTGACACATACGGA CCTCAAGCCTGAAAACATTCTGTTTGTGAATTCAGACTACGAGCTCACCTACAACCTAGA GAAGAAGCGAGATGAGCGAAGCGTGAAGAGCACAGCTGTGCGGGTGGTAGACTTTGGCAG TGCCACCTTTGACCATGAACACCATAGCACCATCGTCTCTACCCGCCACTACCGAGCACC AGAGGTTATCCTCGAGTTGGGCTGGTCACAGCCTTGTGATGTGTGGAGCATAGGCTGCAT GAGCCACCTAACGCCAAGTTGTGGGACTCCAGTCGGGATATCAGTCGGTGACGATCAGGC CCTGGGCCCCCCTGCGTTTCTGACAGCAGTGGGTGTCCAGTCCAGGAGAGTAGTAATGAG TAAGGTAAGATTTCTTGGTTAGAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 106 entry(ies) | More info |
| Aligned organism(s): 106 entry(ies) | Help | Less info |
| 224-342, gnl|bosTau2|chr3 (10305129-10305247) | |
| 224-342, gnl|canFam2|chr7 (45262492-45262354) | |
| 224-342, gnl|canFam2|chr7 (45262470-45262361) | |
| 224-342, gnl|danRer3|chr19 (13968036-13968164) | |
| 224-342, gnl|danRer3|chr19 (13968048-13968160) | |
| 224-342, gnl|dasNov1|scaffold_155026 (357-495) | |
| 224-342, gnl|dasNov1|scaffold_15758 (5470-5583) | |
| 224-342, gnl|echTel1|scaffold_312049 (123904-123767) | |
| 224-342, gnl|echTel1|scaffold_312049 (123883-123774) | |
| 224-342, gnl|fr1|chrUn (156420956-156421083) | |
| 224-342, gnl|fr1|chrUn (156420967-156421079) | |
| 224-342, gnl|galGal2|chrE26C13 (26679-26822) | |
| 224-342, gnl|galGal2|chrE26C13 (26497-26565) | |
| 224-342, gnl|hg17|chr1 (152050859-152050997) | |
| 224-342, gnl|Hg17|chr1 (152050992-152050874) | |
| 224-342, gnl|hg17|chr7 (23398754-23398867) | |
| 224-342, gnl|loxAfr1|scaffold_23575 (10273-10133) | |
| 224-342, gnl|loxAfr1|scaffold_23575 (10241-10136) | |
| 224-342, gnl|mm7|chr3 (89296836-89296698) | |
| 224-342, gnl|mm7|chr3 (89296814-89296701) | |
| 224-342, gnl|Mm7|chr3 (89296701-89296819) | |
| 224-342, gnl|monDom2|scaffold_59 (2453337-2453199) | |
| 224-342, gnl|monDom2|scaffold_59 (2453315-2453202) | |
| 224-342, gnl|oryCun1|scaffold_199674 (120233-120371) | |
| 224-342, gnl|oryCun1|scaffold_199674 (120255-120368) | |
| 224-342, gnl|panTro1|chr1 (134042590-134042728) | |
| 224-342, gnl|panTro1|chr6 (24471797-24471890) | |
| 224-342, gnl|rheMac2|chr1 (133824097-133824235) | |
| 224-342, gnl|rheMac2|chr3 (102651830-102651717) | |
| 224-342, gnl|rn3|chr2 (181201427-181201299) | |
| 224-342, gnl|rn3|chr2 (181201415-181201306) | |
| 224-342, gnl|tetNig1|chr21_random (2453841-2453714) | |
| 224-342, gnl|tetNig1|chr21_random (2453830-2453718) | |
| 224-342, gnl|xenTro1|scaffold_1466 (104959-104832) | |
| 224-342, gnl|xenTro1|scaffold_1466 (104948-104836) | |
| 343-502, gnl|bosTau2|chr21 (22814635-22814794) | |
| 343-502, gnl|canFam2|chr30 (40714102-40713937) | |
| 343-502, gnl|canFam2|chr30 (40713916-40714112) | |
| 343-502, gnl|danRer3|chr14 (2932263-2932060) | |
| 343-502, gnl|danRer3|chr19 (13967924-13967744) | |
| 343-502, gnl|dasNov1|scaffold_15758 (4515-4680) | |
| 343-502, gnl|dasNov1|scaffold_15758 (4701-4505) | |
| 343-502, gnl|echTel1|scaffold_312287 (2296-2461) | |
| 343-502, gnl|echTel1|scaffold_312287 (2481-2287) | |
| 343-502, gnl|fr1|chrUn (289892799-289892642) | |
| 343-502, gnl|fr1|chrUn (156420886-156420696) | |
| 343-502, gnl|galGal2|chr10 (50305-50104) | |
| 343-502, gnl|hg17|chr1 (244426000-244426163) | |
| 343-502, gnl|hg17|chr15 (72705177-72705373) | |
| 343-502, gnl|Hg17|chr15 (72705196-72705355) | |
| 343-502, gnl|loxAfr1|scaffold_23575 (11247-11082) | |
| 343-502, gnl|loxAfr1|scaffold_23575 (11062-11257) | |
| 343-502, gnl|mm7|chr9 (57782169-57782334) | |
| 343-502, gnl|mm7|chr9 (57782355-57782159) | |
| 343-502, gnl|Mm7|chr9 (57782334-57782175) | |
| 343-502, gnl|monDom2|scaffold_41 (2939732-2939897) | |
| 343-502, gnl|monDom2|scaffold_41 (2939914-2939719) | |
| 343-502, gnl|oryCun1|scaffold_96358 (4518-4358) | |
| 343-502, gnl|oryCun1|scaffold_96358 (4341-4533) | |
| 343-502, gnl|panTro1|chr1 (228493307-228493470) | |
| 343-502, gnl|panTro1|chr16_random (21834915-21835111) | |
| 343-502, gnl|rheMac2|chr1 (209026606-209026445) | |
| 343-502, gnl|rheMac2|chr7 (53428241-53428437) | |
| 343-502, gnl|rn3|chr8 (61542053-61542218) | |
| 343-502, gnl|rn3|chr8 (61542239-61542043) | |
| 343-502, gnl|tetNig1|chr21_random (2454196-2454045) | |
| 343-502, gnl|tetNig1|chr21_random (2454009-2454214) | |
| 343-502, gnl|xenTro1|scaffold_295 (35767-35592) | |
| 603-732, gnl|bosTau2|chr3 (10307802-10307931) | |
| 603-732, gnl|canFam2|chr7 (45265603-45265487) | |
| 603-732, gnl|canFam2|chr7 (45265593-45265469) | |
| 603-732, gnl|danRer3|chr19 (13967267-13967382) | |
| 603-732, gnl|danRer3|chr19 (13967276-13967400) | |
| 603-732, gnl|dasNov1|scaffold_15758 (2964-3080) | |
| 603-732, gnl|dasNov1|scaffold_15758 (2974-3173) | |
| 603-732, gnl|echTel1|scaffold_312049 (126765-126649) | |
| 603-732, gnl|echTel1|scaffold_312049 (126758-126631) | |
| 603-732, gnl|fr1|chrUn (156419916-156420032) | |
| 603-732, gnl|fr1|chrUn (156419923-156420050) | |
| 603-732, gnl|galGal2|chrE26C13 (25431-25547) | |
| 603-732, gnl|galGal2|chrE26C13 (25438-25565) | |
| 603-732, gnl|hg17|chr1 (152047505-152047621) | |
| 603-732, gnl|Hg17|chr1 (152047640-152047511) | |
| 603-732, gnl|hg17|chr7 (23398361-23398488) | |
| 603-732, gnl|loxAfr1|scaffold_219546 (813-697) | |
| 603-732, gnl|loxAfr1|scaffold_23575 (12792-12684) | |
| 603-732, gnl|mm7|chr3 (89301490-89301374) | |
| 603-732, gnl|mm7|chr3 (89301483-89301356) | |
| 603-732, gnl|Mm7|chr3 (89301353-89301482) | |
| 603-732, gnl|monDom2|scaffold_59 (2456570-2456454) | |
| 603-732, gnl|monDom2|scaffold_59 (2456563-2456436) | |
| 603-732, gnl|oryCun1|scaffold_199674 (117816-117932) | |
| 603-732, gnl|oryCun1|scaffold_199674 (117823-117950) | |
| 603-732, gnl|panTro1|chr1 (134039296-134039412) | |
| 603-732, gnl|panTro1|chr6 (24471403-24471531) | |
| 603-732, gnl|rheMac2|chr1 (133821066-133821182) | |
| 603-732, gnl|rheMac2|chr3 (102652224-102652099) | |
| 603-732, gnl|rn3|chr2 (181205662-181205546) | |
| 603-732, gnl|rn3|chr2 (181205655-181205528) | |
| 603-732, gnl|tetNig1|chr21_random (2454710-2454594) | |
| 603-732, gnl|tetNig1|chr21_random (2454703-2454576) | |
| 603-732, gnl|xenTro1|scaffold_1466 (106486-106370) | |
| 603-732, gnl|xenTro1|scaffold_1466 (106479-106352) | |
| 780-894, gnl|bosTau2|chr3 (10309255-10309370) | |
| 780-894, gnl|Hg17|chr1 (152046130-152046019) | |
| 780-894, gnl|Mm7|chr3 (89302938-89303051) |
| Aligned organism(s): 106 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 224-342, gnl|bosTau2|chr3 (10305129-10305247) | |
| 224-342, gnl|canFam2|chr7 (45262492-45262354) | |
| 224-342, gnl|canFam2|chr7 (45262470-45262361) | |
| 224-342, gnl|danRer3|chr19 (13968036-13968164) | |
| 224-342, gnl|danRer3|chr19 (13968048-13968160) | |
| 224-342, gnl|dasNov1|scaffold_155026 (357-495) | |
| 224-342, gnl|dasNov1|scaffold_15758 (5470-5583) | |
| 224-342, gnl|echTel1|scaffold_312049 (123904-123767) | |
| 224-342, gnl|echTel1|scaffold_312049 (123883-123774) | |
| 224-342, gnl|fr1|chrUn (156420956-156421083) | |
| 224-342, gnl|fr1|chrUn (156420967-156421079) | |
| 224-342, gnl|galGal2|chrE26C13 (26679-26822) | |
| 224-342, gnl|galGal2|chrE26C13 (26497-26565) | |
| 224-342, gnl|hg17|chr1 (152050859-152050997) | |
| 224-342, gnl|Hg17|chr1 (152050992-152050874) | |
| 224-342, gnl|hg17|chr7 (23398754-23398867) | |
| 224-342, gnl|loxAfr1|scaffold_23575 (10273-10133) | |
| 224-342, gnl|loxAfr1|scaffold_23575 (10241-10136) | |
| 224-342, gnl|mm7|chr3 (89296836-89296698) | |
| 224-342, gnl|mm7|chr3 (89296814-89296701) | |
| 224-342, gnl|Mm7|chr3 (89296701-89296819) | |
| 224-342, gnl|monDom2|scaffold_59 (2453337-2453199) | |
| 224-342, gnl|monDom2|scaffold_59 (2453315-2453202) | |
| 224-342, gnl|oryCun1|scaffold_199674 (120233-120371) | |
| 224-342, gnl|oryCun1|scaffold_199674 (120255-120368) | |
| 224-342, gnl|panTro1|chr1 (134042590-134042728) | |
| 224-342, gnl|panTro1|chr6 (24471797-24471890) | |
| 224-342, gnl|rheMac2|chr1 (133824097-133824235) | |
| 224-342, gnl|rheMac2|chr3 (102651830-102651717) | |
| 224-342, gnl|rn3|chr2 (181201427-181201299) | |
| 224-342, gnl|rn3|chr2 (181201415-181201306) | |
| 224-342, gnl|tetNig1|chr21_random (2453841-2453714) | |
| 224-342, gnl|tetNig1|chr21_random (2453830-2453718) | |
| 224-342, gnl|xenTro1|scaffold_1466 (104959-104832) | |
| 224-342, gnl|xenTro1|scaffold_1466 (104948-104836) | |
| 343-502, gnl|bosTau2|chr21 (22814635-22814794) | |
| 343-502, gnl|canFam2|chr30 (40714102-40713937) | |
| 343-502, gnl|canFam2|chr30 (40713916-40714112) | |
| 343-502, gnl|danRer3|chr14 (2932263-2932060) | |
| 343-502, gnl|danRer3|chr19 (13967924-13967744) | |
| 343-502, gnl|dasNov1|scaffold_15758 (4515-4680) | |
| 343-502, gnl|dasNov1|scaffold_15758 (4701-4505) | |
| 343-502, gnl|echTel1|scaffold_312287 (2296-2461) | |
| 343-502, gnl|echTel1|scaffold_312287 (2481-2287) | |
| 343-502, gnl|fr1|chrUn (289892799-289892642) | |
| 343-502, gnl|fr1|chrUn (156420886-156420696) | |
| 343-502, gnl|galGal2|chr10 (50305-50104) | |
| 343-502, gnl|hg17|chr1 (244426000-244426163) | |
| 343-502, gnl|hg17|chr15 (72705177-72705373) | |
| 343-502, gnl|Hg17|chr15 (72705196-72705355) | |
| 343-502, gnl|loxAfr1|scaffold_23575 (11247-11082) | |
| 343-502, gnl|loxAfr1|scaffold_23575 (11062-11257) | |
| 343-502, gnl|mm7|chr9 (57782169-57782334) | |
| 343-502, gnl|mm7|chr9 (57782355-57782159) | |
| 343-502, gnl|Mm7|chr9 (57782334-57782175) | |
| 343-502, gnl|monDom2|scaffold_41 (2939732-2939897) | |
| 343-502, gnl|monDom2|scaffold_41 (2939914-2939719) | |
| 343-502, gnl|oryCun1|scaffold_96358 (4518-4358) | |
| 343-502, gnl|oryCun1|scaffold_96358 (4341-4533) | |
| 343-502, gnl|panTro1|chr1 (228493307-228493470) | |
| 343-502, gnl|panTro1|chr16_random (21834915-21835111) | |
| 343-502, gnl|rheMac2|chr1 (209026606-209026445) | |
| 343-502, gnl|rheMac2|chr7 (53428241-53428437) | |
| 343-502, gnl|rn3|chr8 (61542053-61542218) | |
| 343-502, gnl|rn3|chr8 (61542239-61542043) | |
| 343-502, gnl|tetNig1|chr21_random (2454196-2454045) | |
| 343-502, gnl|tetNig1|chr21_random (2454009-2454214) | |
| 343-502, gnl|xenTro1|scaffold_295 (35767-35592) | |
| 603-732, gnl|bosTau2|chr3 (10307802-10307931) | |
| 603-732, gnl|canFam2|chr7 (45265603-45265487) | |
| 603-732, gnl|canFam2|chr7 (45265593-45265469) | |
| 603-732, gnl|danRer3|chr19 (13967267-13967382) | |
| 603-732, gnl|danRer3|chr19 (13967276-13967400) | |
| 603-732, gnl|dasNov1|scaffold_15758 (2964-3080) | |
| 603-732, gnl|dasNov1|scaffold_15758 (2974-3173) | |
| 603-732, gnl|echTel1|scaffold_312049 (126765-126649) | |
| 603-732, gnl|echTel1|scaffold_312049 (126758-126631) | |
| 603-732, gnl|fr1|chrUn (156419916-156420032) | |
| 603-732, gnl|fr1|chrUn (156419923-156420050) | |
| 603-732, gnl|galGal2|chrE26C13 (25431-25547) | |
| 603-732, gnl|galGal2|chrE26C13 (25438-25565) | |
| 603-732, gnl|hg17|chr1 (152047505-152047621) | |
| 603-732, gnl|Hg17|chr1 (152047640-152047511) | |
| 603-732, gnl|hg17|chr7 (23398361-23398488) | |
| 603-732, gnl|loxAfr1|scaffold_219546 (813-697) | |
| 603-732, gnl|loxAfr1|scaffold_23575 (12792-12684) | |
| 603-732, gnl|mm7|chr3 (89301490-89301374) | |
| 603-732, gnl|mm7|chr3 (89301483-89301356) | |
| 603-732, gnl|Mm7|chr3 (89301353-89301482) | |
| 603-732, gnl|monDom2|scaffold_59 (2456570-2456454) | |
| 603-732, gnl|monDom2|scaffold_59 (2456563-2456436) | |
| 603-732, gnl|oryCun1|scaffold_199674 (117816-117932) | |
| 603-732, gnl|oryCun1|scaffold_199674 (117823-117950) | |
| 603-732, gnl|panTro1|chr1 (134039296-134039412) | |
| 603-732, gnl|panTro1|chr6 (24471403-24471531) | |
| 603-732, gnl|rheMac2|chr1 (133821066-133821182) | |
| 603-732, gnl|rheMac2|chr3 (102652224-102652099) | |
| 603-732, gnl|rn3|chr2 (181205662-181205546) | |
| 603-732, gnl|rn3|chr2 (181205655-181205528) | |
| 603-732, gnl|tetNig1|chr21_random (2454710-2454594) | |
| 603-732, gnl|tetNig1|chr21_random (2454703-2454576) | |
| 603-732, gnl|xenTro1|scaffold_1466 (106486-106370) | |
| 603-732, gnl|xenTro1|scaffold_1466 (106479-106352) | |
| 780-894, gnl|bosTau2|chr3 (10309255-10309370) | |
| 780-894, gnl|Hg17|chr1 (152046130-152046019) | |
| 780-894, gnl|Mm7|chr3 (89302938-89303051) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| mas (0.210305) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ova (0.129132) | |
| eru (0.120048) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ova (0.129132) | |
| eru (0.120048) | |
| cty (0.10408) |