Ss1.1-Tra1-TCH01D080081.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGGCTCTAAACCCCTCCACATTCCCGCAGACCTTCAGACTGCCCGGAGCCCGCTCGCCT GCTGCCTGCCTGCCTGCCACTGAGGGTTCCCAGCACCATGAGGGCCTGGATCTTCTTCCT CCTTTGCCTGGCCGGGAAGGCCTTGGCAGCCCCTCAACAGGAAGCCCTGCCTGATGAGAC GGAGGTGGTGGAGGAAACCGTGGCCGAGGTACCTGTGGGCGCCAACCCTGTCCAGGTGGA AGTAGGAGAATTTGATGACGGTGCTGAGGAAGCCGAGGAGGAGGTGGTGGCTGAAAACCC CTGCCAGAACCACCACTGCAAACACGGCAAGGTGTGCGAGCTGGACGAGAACAACTCCCC CATGTGCGTGTGCCAGGACCCCACCAGCTGCCCTGCCCCCATCGGCGAGTTTGAGAAGGT ATGCAGCAATGACAACAAGACCTTTGACTCTTCCTGCCACTTCTTTGCCACCAAGTGCAC ACTGGAGGGCACCAAGAAGGGCCACAAGCTCCACCTGGACTACATCGGACCTTGCAAATA CATCCCCCCCTGCCTGGACTCCGAGCTGACTGAATTCCCCCTGCGCATGCGGGACTGGCT CAAGAACGTCCTGGTCACCTTGTACGAGAGGGATGAGAACAACAACCTTCTGACCGAGAA GCAGAAGCTGCGAGTGAAGAAGATCCACGAGAATGAGAAGCGCCTGGAGGCCGGAGACCA CCCCGTGGAGCTGCTGGCCCGGGACTTCGAGAAGAACTACAACATGTACATCTTCCCCGT GCACTGGCAGTTCGGGCAGCTGGACCAGCACCCCATTGATGGGTACCTGTCTCACACTGA GCTGGCCCCACTGCGTGCGCCCCTCATCCCCATGGAGCACTGCACCACCCGCTTCTTCCA GACCTGCGACCTGGACAATGACAAGTACATTGCCCTGGATGAGTGGGCCGGCTGCTTCGG CATCAAGGAGCAGGACATCGACAAGGATCTCGTGATCTAAGCCCCGCCTCCTCCCGCAGA ACCAGATTCCCTCTCTCTGCCCTTCCCCTCCTCCTGTTCTCCCCAATGTTTAAAATGTTT GGATGGTTTGTCGTTCTGCCTGGGGACAAGGTGCTAATATAGATTTCAATGAATACATTA ACGGTGCTAAACAGGGAAATTTTAACCCAAGTCATGACATTCTTAGCTGTAACTCAGCTC GCACGGCCTCTTGCTCACCCACTAAGGAGCCCATTTCTCTCTTGCCATTTGCAGCTCTTG CCCCTTGTCTTAGTGACGTGTGGGTGGAAACTGATCTGTTCAAGTCTGCCTTCAACGCAC GTTGCATCTCCGATTTTCATTCTTTTCTGTTTGAAACTAACACTCACAGAGAGAGATTTT GTGTTAATTACATGTCAGGGTATTGGCTGCCAGGGATTCATGCCTGAAGGTGGGCAAGGG AAGTCACAGACCCGTGACACTGGCAAGGCTCTTCCTGGGGCTAGAGGATGAGTGGCGGGA GAAAGTTCCAGAACCCACCAGCCAGAAGCCCAGATAACTGTCTGCCCAAGGCTGTGTGAT GGAAATACAGACGCTCTCGCCTAAACCCAGTTCCTCACCACTTCCCCTCACTTTTCAGTG CCATTTCTTCCCACATTTGGCTGTTTGTTCAAACTTCTCAGAGCCCAGAGCCATGGACCA TCAGTTCTCTGGAATCCACCACACCTCGGGGGGCGGGGTGGGGGCTGTGGATCACTACAT CCGACAGGGGTGCCCCCCGCAACTATCTTTGGGAGACGCAGAACTGGGAGGCCAAAATCA AGAGTGAGGCGCAGGAAGTTGTAAAATAGAAAAAGTGCAGTTGGTGAAGTGGTTTCGTTT GTGGGGGCTTTTGTTTTTTCTTTTTCCACATTTGGATACCTATTATGAGGGATCTTTCCT TTGCTTTCTAGCATGTTCCCCCACCCCCCCCCCTTTTCCCTCTATTAATCAAGAGAAACT TCAAAGTCAATGGGATGGTCGGATCTCACAGGCTGAGAACTCGTTCACCTCCAAGCATTT CATGAAAAAGCTGCTTCTTATTAATCATGCAAACTCTTGCCACGATGTGAAGGGTTTGAC AAATCTTTCAAAATAAAAAGTAATGACTTAGAAACTAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGGCTCTAAACCCCTCCACATTCCCGCAGACCTTCAGACTGCCCGGAGCCCGCTCGCCT GCTGCCTGCCTGCCTGCCACTGAGGGTTCCCAGCACCATGAGGGCCTGGATCTTCTTCCT CCTTTGCCTGGCCGGGAAGGCCTTGGCAGCCCCTCAACAGGAAGCCCTGCCTGATGAGAC GGAGGTGGTGGAGGAAACCGTGGCCGAGGTACCTGTGGGCGCCAACCCTGTCCAGGTGGA AGTAGGAGAATTTGATGACGGTGCTGAGGAAGCCGAGGAGGAGGTGGTGGCTGAAAACCC CTGCCAGAACCACCACTGCAAACACGGCAAGGTGTGCGAGCTGGACGAGAACAACTCCCC CATGTGCGTGTGCCAGGACCCCACCAGCTGCCCTGCCCCCATCGGCGAGTTTGAGAAGGT ATGCAGCAATGACAACAAGACCTTTGACTCTTCCTGCCACTTCTTTGCCACCAAGTGCAC ACTGGAGGGCACCAAGAAGGGCCACAAGCTCCACCTGGACTACATCGGACCTTGCAAATA CATCCCCCCCTGCCTGGACTCCGAGCTGACTGAATTCCCCCTGCGCATGCGGGACTGGCT CAAGAACGTCCTGGTCACCTTGTACGAGAGGGATGAGAACAACAACCTTCTGACCGAGAA GCAGAAGCTGCGAGTGAAGAAGATCCACGAGAATGAGAAGCGCCTGGAGGCCGGAGACCA CCCCGTGGAGCTGCTGGCCCGGGACTTCGAGAAGAACTACAACATGTACATCTTCCCCGT GCACTGGCAGTTCGGGCAGCTGGACCAGCACCCCATTGATGGGTACCTGTCTCACACTGA GCTGGCCCCACTGCGTGCGCCCCTCATCCCCATGGAGCACTGCACCACCCGCTTCTTCCA GACCTGCGACCTGGACAATGACAAGTACATTGCCCTGGATGAGTGGGCCGGCTGCTTCGG CATCAAGGAGCAGGACATCGACAAGGATCTCGTGATCTAAGCCCCGCCTCCTCCCGCAGA ACCAGATTCCCTCTCTCTGCCCTTCCCCTCCTCCTGTTCTCCCCAATGTTTAAAATGTTT GGATGGTTTGTCGTTCTGCCTGGGGACAAGGTGCTAATATAGATTTCAATGAATACATTA ACGGTGCTAAACAGGGAAATTTTAACCCAAGTCATGACATTCTTAGCTGTAACTCAGCTC GCACGGCCTCTTGCTCACCCACTAAGGAGCCCATTTCTCTCTTGCCATTTGCAGCTCTTG CCCCTTGTCTTAGTGACGTGTGGGTGGAAACTGATCTGTTCAAGTCTGCCTTCAACGCAC GTTGCATCTCCGATTTTCATTCTTTTCTGTTTGAAACTAACACTCACAGAGAGAGATTTT GTGTTAATTACATGTCAGGGTATTGGCTGCCAGGGATTCATGCCTGAAGGTGGGCAAGGG AAGTCACAGACCCGTGACACTGGCAAGGCTCTTCCTGGGGCTAGAGGATGAGTGGCGGGA GAAAGTTCCAGAACCCACCAGCCAGAAGCCCAGATAACTGTCTGCCCAAGGCTGTGTGAT GGAAATACAGACGCTCTCGCCTAAACCCAGTTCCTCACCACTTCCCCTCACTTTTCAGTG CCATTTCTTCCCACATTTGGCTGTTTGTTCAAACTTCTCAGAGCCCAGAGCCATGGACCA TCAGTTCTCTGGAATCCACCACACCTCGGGGGGCGGGGTGGGGGCTGTGGATCACTACAT CCGACAGGGGTGCCCCCCGCAACTATCTTTGGGAGACGCAGAACTGGGAGGCCAAAATCA AGAGTGAGGCGCAGGAAGTTGTAAAATAGAAAAAGTGCAGTTGGTGAAGTGGTTTCGTTT GTGGGGGCTTTTGTTTTTTCTTTTTCCACATTTGGATACCTATTATGAGGGATCTTTCCT TTGCTTTCTAGCATGTTCCCCCACCCCCCCCCCTTTTCCCTCTATTAATCAAGAGAAACT TCAAAGTCAATGGGATGGTCGGATCTCACAGGCTGAGAACTCGTTCACCTCCAAGCATTT CATGAAAAAGCTGCTTCTTATTAATCATGCAAACTCTTGCCACGATGTGAAGGGTTTGAC AAATCTTTCAAAATAAAAAGTAATGACTTAGAAACTAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 297-420, gnl|bosTau2|chr7 (43434282-43434159) | |
| 297-420, gnl|canFam2|chr4 (60876481-60876312) | |
| 297-420, gnl|danRer3|chr14 (25740655-25740798) | |
| 297-420, gnl|dasNov1|scaffold_7506 (56211-56044) | |
| 297-420, gnl|echTel1|scaffold_237194 (5537-5359) | |
| 297-420, gnl|fr1|chrUn (275346984-275347137) | |
| 297-420, gnl|galGal2|chr13 (11874439-11874256) | |
| 297-420, gnl|hg17|chr5 (151031298-151031479) | |
| 297-420, gnl|Hg17|chr5 (151031448-151031325) | |
| 297-420, gnl|mm7|chr11 (55361928-55362085) | |
| 297-420, gnl|Mm7|chr11 (55362058-55361935) | |
| 297-420, gnl|monDom2|scaffold_6 (54683321-54683138) | |
| 297-420, gnl|oryCun1|scaffold_186034 (159397-159553) | |
| 297-420, gnl|panTro1|chr4 (157981214-157981395) | |
| 297-420, gnl|rheMac2|chr6 (148108252-148108432) | |
| 297-420, gnl|rn3|chr10 (40830738-40830895) | |
| 297-420, gnl|tetNig1|chr1_random (4250542-4250389) | |
| 297-420, gnl|xenTro1|scaffold_848 (137560-137725) | |
| 674-825, gnl|bosTau2|chr7 (43429267-43429116) | |
| 674-825, gnl|canFam2|chr4 (60881514-60881358) | |
| 674-825, gnl|danRer3|chr14 (25737376-25737530) | |
| 674-825, gnl|dasNov1|scaffold_7506 (60310-60176) | |
| 674-825, gnl|echTel1|scaffold_237194 (8504-8347) | |
| 674-825, gnl|fr1|chrUn (275345972-275346128) | |
| 674-825, gnl|galGal2|chr13 (11875370-11875214) | |
| 674-825, gnl|hg17|chr5 (151026111-151026267) | |
| 674-825, gnl|Hg17|chr5 (151026263-151026112) | |
| 674-825, gnl|loxAfr1|scaffold_3836 (13952-14108) | |
| 674-825, gnl|mm7|chr11 (55355301-55355457) | |
| 674-825, gnl|Mm7|chr11 (55355453-55355302) | |
| 674-825, gnl|monDom2|scaffold_6 (54689293-54689137) | |
| 674-825, gnl|oryCun1|scaffold_186034 (155043-155199) | |
| 674-825, gnl|panTro1|chr4 (157976008-157976164) | |
| 674-825, gnl|rheMac2|chr6 (148102854-148103010) | |
| 674-825, gnl|rn3|chr10 (40827504-40827660) | |
| 674-825, gnl|tetNig1|chr1_random (4251470-4251314) | |
| 674-825, gnl|xenTro1|scaffold_848 (133275-133431) | |
| 972-1538, gnl|bosTau2|chr7 (43426656-43426080) | |
| 972-1538, gnl|Hg17|chr5 (151023353-151022789) | |
| 972-1538, gnl|Mm7|chr11 (55352370-55351821) | |
| 1549-2136, gnl|bosTau2|chr7 (43426038-43425449) | |
| 1549-2136, gnl|Hg17|chr5 (151022750-151022192) | |
| 1549-2136, gnl|Mm7|chr11 (55351779-55351259) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 297-420, gnl|bosTau2|chr7 (43434282-43434159) | |
| 297-420, gnl|canFam2|chr4 (60876481-60876312) | |
| 297-420, gnl|danRer3|chr14 (25740655-25740798) | |
| 297-420, gnl|dasNov1|scaffold_7506 (56211-56044) | |
| 297-420, gnl|echTel1|scaffold_237194 (5537-5359) | |
| 297-420, gnl|fr1|chrUn (275346984-275347137) | |
| 297-420, gnl|galGal2|chr13 (11874439-11874256) | |
| 297-420, gnl|hg17|chr5 (151031298-151031479) | |
| 297-420, gnl|Hg17|chr5 (151031448-151031325) | |
| 297-420, gnl|mm7|chr11 (55361928-55362085) | |
| 297-420, gnl|Mm7|chr11 (55362058-55361935) | |
| 297-420, gnl|monDom2|scaffold_6 (54683321-54683138) | |
| 297-420, gnl|oryCun1|scaffold_186034 (159397-159553) | |
| 297-420, gnl|panTro1|chr4 (157981214-157981395) | |
| 297-420, gnl|rheMac2|chr6 (148108252-148108432) | |
| 297-420, gnl|rn3|chr10 (40830738-40830895) | |
| 297-420, gnl|tetNig1|chr1_random (4250542-4250389) | |
| 297-420, gnl|xenTro1|scaffold_848 (137560-137725) | |
| 674-825, gnl|bosTau2|chr7 (43429267-43429116) | |
| 674-825, gnl|canFam2|chr4 (60881514-60881358) | |
| 674-825, gnl|danRer3|chr14 (25737376-25737530) | |
| 674-825, gnl|dasNov1|scaffold_7506 (60310-60176) | |
| 674-825, gnl|echTel1|scaffold_237194 (8504-8347) | |
| 674-825, gnl|fr1|chrUn (275345972-275346128) | |
| 674-825, gnl|galGal2|chr13 (11875370-11875214) | |
| 674-825, gnl|hg17|chr5 (151026111-151026267) | |
| 674-825, gnl|Hg17|chr5 (151026263-151026112) | |
| 674-825, gnl|loxAfr1|scaffold_3836 (13952-14108) | |
| 674-825, gnl|mm7|chr11 (55355301-55355457) | |
| 674-825, gnl|Mm7|chr11 (55355453-55355302) | |
| 674-825, gnl|monDom2|scaffold_6 (54689293-54689137) | |
| 674-825, gnl|oryCun1|scaffold_186034 (155043-155199) | |
| 674-825, gnl|panTro1|chr4 (157976008-157976164) | |
| 674-825, gnl|rheMac2|chr6 (148102854-148103010) | |
| 674-825, gnl|rn3|chr10 (40827504-40827660) | |
| 674-825, gnl|tetNig1|chr1_random (4251470-4251314) | |
| 674-825, gnl|xenTro1|scaffold_848 (133275-133431) | |
| 972-1538, gnl|bosTau2|chr7 (43426656-43426080) | |
| 972-1538, gnl|Hg17|chr5 (151023353-151022789) | |
| 972-1538, gnl|Mm7|chr11 (55352370-55351821) | |
| 1549-2136, gnl|bosTau2|chr7 (43426038-43425449) | |
| 1549-2136, gnl|Hg17|chr5 (151022750-151022192) | |
| 1549-2136, gnl|Mm7|chr11 (55351779-55351259) |
| Expressed library(ies): 58 entry(ies) | More info |
| Expressed library(ies): 58 entry(ies) | Help | Less info |
| amn (12.5313) | |
| nca (10.4024) | |
| jca (10.3704) | |
| eru (6.72269) | |
| nep (6.25345) | |
| eep (5.02513) | |
| csk (4.22238) | |
| med (4.18507) | |
| nlu (4.0253) | |
| elu (3.08285) | |
| eye (2.89855) | |
| nmm (2.65604) | |
| clu (2.27327) | |
| ese (2.15054) | |
| mas (2.10305) | |
| cga (1.95367) | |
| cly (1.93027) | |
| nms (1.92472) | |
| fbs (1.40277) | |
| eje (1.38367) | |
| fhi (1.35662) | |
| cov (1.32153) | |
| hyp (1.28553) | |
| ton (1.2285) | |
| nbm (1.1919) | |
| fce (1.08637) | |
| nco (0.970403) | |
| cty (0.936719) | |
| mcp (0.853242) | |
| fcc (0.791139) | |
| cag (0.755972) | |
| pty (0.713572) | |
| ute (0.663922) | |
| nje (0.66368) | |
| lnt (0.569233) | |
| fty (0.527519) | |
| csp (0.483559) | |
| ece (0.45861) | |
| fat (0.442282) | |
| ebs (0.354904) | |
| hlv (0.278513) | |
| cbr (0.255951) | |
| ecc (0.23007) | |
| jej (0.197844) | |
| aor (0.195274) | |
| ill (0.175593) | |
| duo (0.172801) | |
| cut (0.169924) | |
| mga (0.160205) | |
| cli (0.152812) | |
| ski (0.146735) | |
| liv (0.146284) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ret (0.128733) | |
| tra (0.123092) | |
| ldo (0.0970026) |
| Expressed library(ies): 58 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (12.5313) | |
| nca (10.4024) | |
| jca (10.3704) | |
| eru (6.72269) | |
| nep (6.25345) | |
| eep (5.02513) | |
| csk (4.22238) | |
| med (4.18507) | |
| nlu (4.0253) | |
| elu (3.08285) | |
| eye (2.89855) | |
| nmm (2.65604) | |
| clu (2.27327) | |
| ese (2.15054) | |
| mas (2.10305) | |
| cga (1.95367) | |
| cly (1.93027) | |
| nms (1.92472) | |
| fbs (1.40277) | |
| eje (1.38367) | |
| fhi (1.35662) | |
| cov (1.32153) | |
| hyp (1.28553) | |
| ton (1.2285) | |
| nbm (1.1919) | |
| fce (1.08637) | |
| nco (0.970403) | |
| cty (0.936719) | |
| mcp (0.853242) | |
| fcc (0.791139) | |
| cag (0.755972) | |
| pty (0.713572) | |
| ute (0.663922) | |
| nje (0.66368) | |
| lnt (0.569233) | |
| fty (0.527519) | |
| csp (0.483559) | |
| ece (0.45861) | |
| fat (0.442282) | |
| ebs (0.354904) | |
| hlv (0.278513) | |
| cbr (0.255951) | |
| ecc (0.23007) | |
| jej (0.197844) | |
| aor (0.195274) | |
| ill (0.175593) | |
| duo (0.172801) | |
| cut (0.169924) | |
| mga (0.160205) | |
| cli (0.152812) | |
| ski (0.146735) | |
| liv (0.146284) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ret (0.128733) | |
| tra (0.123092) | |
| ldo (0.0970026) |