Non-Coding RNA Search

Ss1.1-Tra1-TCH01D080103.5

Sequence:


               
               GGGAACGCCAGCCTGTGCCCAACGCTTGCCCCCACAAGGCCAGCACTAACAGGACAGCCC
TTTTTGTTGTCATTTAACATCTTTCTTCCTGCCTTTAAAATGGGGAGGAAGGTTCCATAA
GCTACATGTTCCCTAGTTAAGCTCTTTCCTATTGTGTTTATACAGTTTTGTTTGTTATAC
TCTTTGCACCTTAAACCCCCACAACTACCCCCACAACCACCACCTTCCCAACATGGCTGG
AGTGGGAAGAGGCCTGAGCCCAGTGGGGGCCTGGGGCGGGGGGAACTGGCCTCATCAGCC
CAAGGGCTGAGGGGGTTGGAATGCCTCTGACCTCCTTGTGAGGCCCAGGGTGCTGGGGCA
GGGGACAGGGGACATTTTAATCATCAATAAACGAAGCACTTTATTCTGTACAGATGTGGG
CAGGCCCAAGGAGCCCGAGTGATTTGAGAATTTAGAATCCAAGCCACACAACCCAGATTG
TTCTCTGGGCCCTGAGGGGGCAATGCCCTGGCCTGGTTGAGTTTGGGGCTACAGCAGGAA
CAGTGCAAGCCAGAGCCTATGGACGCACCCTCCTGCGTCCTCTGGGGAGAAAAAGTGGGC
TCTTCCCCAAGAGAGGAAAGCTCCCTGTCTGGCTCCCAGCTCTGCGGCTCCCTTACCCCA
AGGCTGGGGGTTCCGGCCTCTTCTGGGTTCAGGGCTGTACCTCTCAGGCTCCTGCTTTGC
GGTAGCTCTTTCCCTTTCCTGCACCCCTTGATTGCTGGGCTTCCATGACGTCCTCAGGGT
CTCCCCTCCCTGTTTCCCCCTCCCCCTTGCTATTTCTAACCTCTGGTCCCAGTGCCTGGC
AGCTCTTCAGAGCTGGCCCCTGTTTTCCTAAGAAAGGTTTGATCTTCCCAAACTGTAGGC
TGTANGCTGGGACTCCCATGGGTTTCCCACCCCCTGTCACTGACACCAGGGTCTCCTTTA
GGGGCTGGTGGCCCTGTCAACCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAACGCCAGCCTGTGCCCAACGCTTGCCCCCACAAGGCCAGCACTAACAGGACAGCCC
TTTTTGTTGTCATTTAACATCTTTCTTCCTGCCTTTAAAATGGGGAGGAAGGTTCCATAA
GCTACATGTTCCCTAGTTAAGCTCTTTCCTATTGTGTTTATACAGTTTTGTTTGTTATAC
TCTTTGCACCTTAAACCCCCACAACTACCCCCACAACCACCACCTTCCCAACATGGCTGG
AGTGGGAAGAGGCCTGAGCCCAGTGGGGGCCTGGGGCGGGGGGAACTGGCCTCATCAGCC
CAAGGGCTGAGGGGGTTGGAATGCCTCTGACCTCCTTGTGAGGCCCAGGGTGCTGGGGCA
GGGGACAGGGGACATTTTAATCATCAATAAACGAAGCACTTTATTCTGTACAGATGTGGG
CAGGCCCAAGGAGCCCGAGTGATTTGAGAATTTAGAATCCAAGCCACACAACCCAGATTG
TTCTCTGGGCCCTGAGGGGGCAATGCCCTGGCCTGGTTGAGTTTGGGGCTACAGCAGGAA
CAGTGCAAGCCAGAGCCTATGGACGCACCCTCCTGCGTCCTCTGGGGAGAAAAAGTGGGC
TCTTCCCCAAGAGAGGAAAGCTCCCTGTCTGGCTCCCAGCTCTGCGGCTCCCTTACCCCA
AGGCTGGGGGTTCCGGCCTCTTCTGGGTTCAGGGCTGTACCTCTCAGGCTCCTGCTTTGC
GGTAGCTCTTTCCCTTTCCTGCACCCCTTGATTGCTGGGCTTCCATGACGTCCTCAGGGT
CTCCCCTCCCTGTTTCCCCCTCCCCCTTGCTATTTCTAACCTCTGGTCCCAGTGCCTGGC
AGCTCTTCAGAGCTGGCCCCTGTTTTCCTAAGAAAGGTTTGATCTTCCCAAACTGTAGGC
TGTANGCTGGGACTCCCATGGGTTTCCCACCCCCTGTCACTGACACCAGGGTCTCCTTTA
GGGGCTGGTGGCCCTGTCAACCTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               200-719, + strand, RNAz p=0.999575
               

               
               800-919, - strand, RNAz p=0.952587

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-719, + strand, RNAz p=0.999575
               

               
               800-919, - strand, RNAz p=0.952587

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               280-329, + strand, RNAmicro p=0.999442

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               280-329, + strand, RNAmicro p=0.999442

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               284-264, CJ029984 full-length enriched swine cDNA library, adult trachea Sus 
(dbj|CJ029984.1|), blast E-value=1e-26, identity=100% 
               

               
               324-490, CJ437409 macaque brain cDNA library QccE Macaca fascicularis cDNA 
(dbj|CJ437409.1|), blast E-value=0, identity=89.82% 
               

               
               306-490, 17490 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|AW477900.1|), 
blast E-value=0, identity=90.81% 
               

               
               334-490, UI-E-EO1-ajb-j-14-0-UI.r1 UI-E-EO1 Homo sapiens cDNA clone 
(gb|BM718586.1|), blast E-value=1.4013e-45, identity=90.45% 
               

               
               352-716, LB02629.CR_D21 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV884013.1|), 
blast E-value=3e-24, identity=88.99% 
               

               
               324-490, 000118BPBA010418HT BPBA Bos taurus cDNA, mRNA sequence 
(gb|DY091681.1|), blast E-value=0, identity=92.22%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               284-264, CJ029984 full-length enriched swine cDNA library, adult trachea Sus 
(dbj|CJ029984.1|), blast E-value=1e-26, identity=100% 
               

               
               324-490, CJ437409 macaque brain cDNA library QccE Macaca fascicularis cDNA 
(dbj|CJ437409.1|), blast E-value=0, identity=89.82% 
               

               
               306-490, 17490 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|AW477900.1|), 
blast E-value=0, identity=90.81% 
               

               
               334-490, UI-E-EO1-ajb-j-14-0-UI.r1 UI-E-EO1 Homo sapiens cDNA clone 
(gb|BM718586.1|), blast E-value=1.4013e-45, identity=90.45% 
               

               
               352-716, LB02629.CR_D21 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV884013.1|), 
blast E-value=3e-24, identity=88.99% 
               

               
               324-490, 000118BPBA010418HT BPBA Bos taurus cDNA, mRNA sequence 
(gb|DY091681.1|), blast E-value=0, identity=92.22%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-984, gnl|bosTau2|chr22 (14292136-14291187)
               

               
               3-984, gnl|Hg17|chr3 (42682280-42683144)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-984, gnl|bosTau2|chr22 (14292136-14291187)
               

               
               3-984, gnl|Hg17|chr3 (42682280-42683144)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               med (0.116252)

	200-719, + strand, RNAz p=0.999575
	800-919, - strand, RNAz p=0.952587

	284-264, CJ029984 full-length enriched swine cDNA library, adult trachea Sus (dbj\|CJ029984.1\|), blast E-value=1e-26, identity=100%
	324-490, CJ437409 macaque brain cDNA library QccE Macaca fascicularis cDNA (dbj\|CJ437409.1\|), blast E-value=0, identity=89.82%
	306-490, 17490 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|AW477900.1\|), blast E-value=0, identity=90.81%
	334-490, UI-E-EO1-ajb-j-14-0-UI.r1 UI-E-EO1 Homo sapiens cDNA clone (gb\|BM718586.1\|), blast E-value=1.4013e-45, identity=90.45%
	352-716, LB02629.CR_D21 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb\|DV884013.1\|), blast E-value=3e-24, identity=88.99%
	324-490, 000118BPBA010418HT BPBA Bos taurus cDNA, mRNA sequence (gb\|DY091681.1\|), blast E-value=0, identity=92.22%

	3-984, gnl\|bosTau2\|chr22 (14292136-14291187)
	3-984, gnl\|Hg17\|chr3 (42682280-42683144)