Non-Coding RNA Search

Ss1.1-Tra1-TCH01D090005.5

Sequence:


               
               ATATTCGAGACAGCAGGGGCAGAACAGGCCTTCACCTCGCGGCAGCCCGAGGGAATGTAG
ACATCTGCCAGTTGTTACATAAATTTGGTGCTGATCTCCTGGCCACCGATTATCAGGGAA
ACACAGCTCTTCATCTCTGCGGCCATGTGGATACTATTCAATTCTTGGTTTCCAATGGAC
TCAAAATTGATATTTGCAATCATCAAGGTGCTACACCTTTAGTTCTGGCAAAGCGCAGGG
GAGTGAATAAAGATGTCATCCGATTGCTGGAATCTTTGGAAGAACAGGAGGTAAAAGGAT
TTAACAGAGGAACTCACTCAAAACTGGAGACCATGCAGACAGCTGAGAGCGAAAGTGCCA
TGGAAAGCCATTCCCTCCTCAATCCCAACCTGCAGCAAGGCGAAGGGGTCCTGTCCAGCT
TCCGAACCACGTGGCAGGAGTTTGTGGAGGATCTGGGCTTCTGGAGGGTGTTGCTTTTGA
TCTTTGTCATTGCTCTGCTGTCTCTTGGCATCGCCTACTATGTGAGTGGGGTGCTGCCCT
TCGTGGAAAACCAGCCTGAACTGGTGCATTAAAGGAGCTCATGGAAAAGGAGGCAGGTGC
CAGTGTCCTGGCTTCCAGTGTTTGTTCTCAGTTTCTCAAAATCTTCTCTTAGTGCAAGGC
AGTGAGGGCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATTCGAGACAGCAGGGGCAGAACAGGCCTTCACCTCGCGGCAGCCCGAGGGAATGTAG
ACATCTGCCAGTTGTTACATAAATTTGGTGCTGATCTCCTGGCCACCGATTATCAGGGAA
ACACAGCTCTTCATCTCTGCGGCCATGTGGATACTATTCAATTCTTGGTTTCCAATGGAC
TCAAAATTGATATTTGCAATCATCAAGGTGCTACACCTTTAGTTCTGGCAAAGCGCAGGG
GAGTGAATAAAGATGTCATCCGATTGCTGGAATCTTTGGAAGAACAGGAGGTAAAAGGAT
TTAACAGAGGAACTCACTCAAAACTGGAGACCATGCAGACAGCTGAGAGCGAAAGTGCCA
TGGAAAGCCATTCCCTCCTCAATCCCAACCTGCAGCAAGGCGAAGGGGTCCTGTCCAGCT
TCCGAACCACGTGGCAGGAGTTTGTGGAGGATCTGGGCTTCTGGAGGGTGTTGCTTTTGA
TCTTTGTCATTGCTCTGCTGTCTCTTGGCATCGCCTACTATGTGAGTGGGGTGCTGCCCT
TCGTGGAAAACCAGCCTGAACTGGTGCATTAAAGGAGCTCATGGAAAAGGAGGCAGGTGC
CAGTGTCCTGGCTTCCAGTGTTTGTTCTCAGTTTCTCAAAATCTTCTCTTAGTGCAAGGC
AGTGAGGGCTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BV97_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BV97_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-196, + strand, RNAz p=0.580289

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-196, + strand, RNAz p=0.580289

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-196, gnl|bosTau2|chr14 (38393959-38393764)
               

               
               1-196, gnl|canFam2|chr13 (5406143-5406323)
               

               
               1-196, gnl|danRer3|chrNA (156727331-156727139)
               

               
               1-196, gnl|dasNov1|scaffold_55071 (1129-1287)
               

               
               1-196, gnl|fr1|chrUn (283904569-283904394)
               

               
               1-196, gnl|galGal2|chrUn (65488922-65488750)
               

               
               1-196, gnl|hg17|chr8 (101610906-101611086)
               

               
               1-196, gnl|Hg17|chr8 (101611122-101610927)
               

               
               1-196, gnl|mm7|chr15 (36595117-36595289)
               

               
               1-196, gnl|Mm7|chr15 (36595325-36595130)
               

               
               1-196, gnl|monDom2|scaffold_3 (63336597-63336417)
               

               
               1-196, gnl|oryCun1|scaffold_187661 (6873-7056)
               

               
               1-196, gnl|panTro1|chr7 (103982551-103982731)
               

               
               1-196, gnl|rheMac2|chr8 (103038075-103038255)
               

               
               1-196, gnl|rn3|chr7 (72015358-72015537)
               

               
               1-196, gnl|tetNig1|chrUn_random (12868754-12868587)
               

               
               1-196, gnl|xenTro1|scaffold_59 (797964-797792)
               


               
               354-672, gnl|bosTau2|chr14 (38386008-38385695)
               

               
               354-672, gnl|Hg17|chr8 (101604177-101603856)
               

               
               354-672, gnl|Mm7|chr15 (36588810-36588509)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-196, gnl|bosTau2|chr14 (38393959-38393764)
               

               
               1-196, gnl|canFam2|chr13 (5406143-5406323)
               

               
               1-196, gnl|danRer3|chrNA (156727331-156727139)
               

               
               1-196, gnl|dasNov1|scaffold_55071 (1129-1287)
               

               
               1-196, gnl|fr1|chrUn (283904569-283904394)
               

               
               1-196, gnl|galGal2|chrUn (65488922-65488750)
               

               
               1-196, gnl|hg17|chr8 (101610906-101611086)
               

               
               1-196, gnl|Hg17|chr8 (101611122-101610927)
               

               
               1-196, gnl|mm7|chr15 (36595117-36595289)
               

               
               1-196, gnl|Mm7|chr15 (36595325-36595130)
               

               
               1-196, gnl|monDom2|scaffold_3 (63336597-63336417)
               

               
               1-196, gnl|oryCun1|scaffold_187661 (6873-7056)
               

               
               1-196, gnl|panTro1|chr7 (103982551-103982731)
               

               
               1-196, gnl|rheMac2|chr8 (103038075-103038255)
               

               
               1-196, gnl|rn3|chr7 (72015358-72015537)
               

               
               1-196, gnl|tetNig1|chrUn_random (12868754-12868587)
               

               
               1-196, gnl|xenTro1|scaffold_59 (797964-797792)
               


               
               354-672, gnl|bosTau2|chr14 (38386008-38385695)
               

               
               354-672, gnl|Hg17|chr8 (101604177-101603856)
               

               
               354-672, gnl|Mm7|chr15 (36588810-36588509)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fcc (0.197785)
               

               
               spl (0.143184)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               spl (0.143184)
               

               
               ese (0.126502)

	1-196, gnl\|bosTau2\|chr14 (38393959-38393764)
	1-196, gnl\|canFam2\|chr13 (5406143-5406323)
	1-196, gnl\|danRer3\|chrNA (156727331-156727139)
	1-196, gnl\|dasNov1\|scaffold_55071 (1129-1287)
	1-196, gnl\|fr1\|chrUn (283904569-283904394)
	1-196, gnl\|galGal2\|chrUn (65488922-65488750)
	1-196, gnl\|hg17\|chr8 (101610906-101611086)
	1-196, gnl\|Hg17\|chr8 (101611122-101610927)
	1-196, gnl\|mm7\|chr15 (36595117-36595289)
	1-196, gnl\|Mm7\|chr15 (36595325-36595130)
	1-196, gnl\|monDom2\|scaffold_3 (63336597-63336417)
	1-196, gnl\|oryCun1\|scaffold_187661 (6873-7056)
	1-196, gnl\|panTro1\|chr7 (103982551-103982731)
	1-196, gnl\|rheMac2\|chr8 (103038075-103038255)
	1-196, gnl\|rn3\|chr7 (72015358-72015537)
	1-196, gnl\|tetNig1\|chrUn_random (12868754-12868587)
	1-196, gnl\|xenTro1\|scaffold_59 (797964-797792)

	354-672, gnl\|bosTau2\|chr14 (38386008-38385695)
	354-672, gnl\|Hg17\|chr8 (101604177-101603856)
	354-672, gnl\|Mm7\|chr15 (36588810-36588509)